BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09410.3
Length=3396
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487754 jgi|Araly1|487754|fgenesh2_kg.6__888__AT5G09410.2 3585 0.0
Ahg951243 jgi|Araly1|951243|scaffold_803130.1 161 3e-38
> Ahg487754 jgi|Araly1|487754|fgenesh2_kg.6__888__AT5G09410.2
Length=3262
Score = 3585 bits (1941), Expect = 0.0
Identities = 2219/2350 (94%), Gaps = 32/2350 (1%)
Strand=Plus/Plus
Query 1021 ATGCAGCCTTCTAATACTGACTCAATGCTGGTGGAAGAAAATTCAGAAAAAGGTGGGCGG 1080
||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| | |
Sbjct 943 ATGCAGCCTTCTAATACTGACTCAATGCTTGTGGAAGAAAATACAGACAAAGGTGGACAG 1002
Query 1081 TTAAAGGCAGAGCATATCAGAAATCCTCTTCAAACTCAATTTAATTGGCAGGATGACACT 1140
|||||||||||||||||||||||||||| | || | || | || || | |
Sbjct 1003 TTAAAGGCAGAGCATATCAGAAATCCTC-T-----TC-A---AACT--CA--ATTA-A-- 1045
Query 1141 GATCTGGCGTTATTTGAGCAAAGTGCACAAGATAATTTTGAGACATTTTCCAGTCTCCTT 1200
|| |||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1046 -AT-TGGC--------AGCAAAATGCACAAGATAATTTTGAGACATTTTCCAGTCTCCTT 1095
Query 1201 GGCAGTGAAAATCTGCAACCTTTTGGAATTAGTTATCAAGCTCCTCCTTCAAATATGGAC 1260
|| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1096 GGGAGTGAAAATCAGCAACCTTTTGGAATTAGTTATCAAGCTCCTCCTTCAAGTATGGAA 1155
Query 1261 TCTGAATATATGCCTGTAATGAAAAT-ATTGCGAAGAAGCGAAGATAGTTTGAAAAAAGT 1319
||||||| ||| ||||||| | |||| |||| |||||||||||| ||||||||||||||
Sbjct 1156 TCTGAATTTATACCTGTAAAG-AAATCATTGTTAAGAAGCGAAGAGAGTTTGAAAAAAGT 1214
Query 1320 CGATAGTTTTTCTAAGTGGGCTATTAAAGAACTTGGGGAGATGGAGGATTTGCAGATGCA 1379
||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1215 CGATAGTTTTTCTCGGTGGGCTAGTAAAGAACTTGGCGAGATGGAGGATTTGCAGATGCA 1274
Query 1380 GTCTTCACGTGGAGATATTGCATGGACCACTGTTGAATGTGAAACTGCAGCAGCTGGGAT 1439
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1275 GTCTTCACGTGGAGATATTGCATGGACCACTGTTGAATGTGAGACTGCAGCAGCCGGGAT 1334
Query 1440 CTCCTTGAGCCCTTCTCTCTCTGAGGATCAGCGTTTCACCATAGTTGATTTTTGGCCAAA 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 CTCCTTGAGCCCTTCTCTCTCTGAGGATCAGCGTTTCACCATAGTTGATTTTTGGCCAAA 1394
Query 1500 AAGTGCAAAGACAGACGCAGAAGTTGAGGTCATGGTTATTGGGACATTTCTACTTAGTCC 1559
| | ||| |||| ||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1395 ATGCGCACAGACTGACGCAGAAGTGGAGGTCATGGTTATTGGGACATTTCTGCTTAGTCC 1454
Query 1560 GCAAGAAGTAACTAAATATAATTGGTCATGCATGTTTGGTGAAGTGGAAGTTCCTGCTGA 1619
|||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1455 GCAAGAAGTAACAAAATATAACTGGTCATGCATGTTTGGTGAAGTGGAGGTTCCTGCTGA 1514
Query 1620 GATTTTAGTAGATGGTGTTCTTTGCTGTCATGCTCCACCGCATACAGCTGGTCACGTCCC 1679
|||||||||||| || |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1515 GATTTTAGTAGACGGCGTTCTTTGCTGTCATGCTCCACCGCATACAGCTGGTCAAGTGCC 1574
Query 1680 CTTTTATGTTACATGTTCCAACAGATTTGCTTGCAGTGAAGTACGAGAATTTGATTTCCT 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1575 CTTTTATGTTACATGTTCCAACAGATTTGCTTGCAGTGAAGTACGAGAATTTGATTTCCT 1634
Query 1740 TTCTGGTTCTACCCAAAAAATCAATGCTACAGATGTTTATGGTACCTATACAAATGAAGC 1799
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1635 TTCTGGTTCTACCCAAAAAATTGATGCTACTGATGTTTATGGTACCTATACAAATGAAGC 1694
Query 1800 ATCACTTCAGTTGCGGTTTGAGAAGATGCTTGCTCACAGGGATTTTGTTCACGAACACCA 1859
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1695 ATCACTTCAGTTGCGGTTTGAGAAGATGCTTGCTCACAGAAATTTTGTTCACGAACATCA 1754
Query 1860 TATATTCGAAGATGTTGGGGACAAACGAAGACAAATCAGTAAAATTATGTTGCTAAAGGA 1919
|||||| |||||||||||||| ||||||||| |||||||||||||||||| ||||||||
Sbjct 1755 TATATTTGAAGATGTTGGGGAGAAACGAAGAAAAATCAGTAAAATTATGTCACTAAAGGA 1814
Query 1920 GGAGAAAGAGTATCTCCTTCCAGGGACATATCAGAGAGACTCAACCAAACAAGAACCAAA 1979
||||||||||||||||||| | ||||||||||||||||| |||| |||||||||||||||
Sbjct 1815 GGAGAAAGAGTATCTCCTTTCTGGGACATATCAGAGAGATTCAATCAAACAAGAACCAAA 1874
Query 1980 AGGACAGCTTTTTAGGGAACTGTTTGAAGAAGAACTATATATATGGCTCATACATAAAGT 2039
|||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1875 AGGACAGCTTTTCAGGGAACAGTTTGAAGAAGAACTATATATATGGCTCATCCATAAAGT 1934
Query 2040 GACTGAAGAGGGTAAAGGTCCAAACATATTGGATGAAGATGGACAGGGTATTTTACACTT 2099
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1935 GACTGAAGAGGGTAAAGGTCCAAACATACTGGATGAAGATGGACAGGGTATTTTACACTT 1994
Query 2100 TGTTGCAGCGCTTGGGTATGACTGGGCCATTAAACCGGTGTTAGCAGCAGGAGTTAACAT 2159
|||||||||||||||||| || |||||||||| |||| || ||||||| |||||||||||
Sbjct 1995 TGTTGCAGCGCTTGGGTACGATTGGGCCATTAGACCGATGCTAGCAGCGGGAGTTAACAT 2054
Query 2160 TAACTTCCGTGATGCCAATGGCTGGTCTGCCCTTCATTGGGCTGCGTTTAGTGGCAGGGA 2219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2055 TAACTTCCGTGATGCCAATGGCTGGTCTGCCCTTCATTGGGCTGCGTTTAGTGGCAGGGA 2114
Query 2220 GGAAACTGTCGCTGTGCTTGTCTCTCTAGGTGCTGATGCTGGGGCATTAACGGATCCATC 2279
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2115 GGAAACTGTCGCTGTGCTTGTCTCTCTAGGTGCTGATGCTGGGGCATTGACGGATCCATC 2174
Query 2280 TCCAGAGCTTCCATTGGGTAAAACAGCAGCTGATTTGGCTTACGCAAATGGACACAGGGG 2339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2175 TCCAGAGCTTCCATTGGGTAAAACAGCAGCTGATTTGGCTTACGCAAATGGACACAGGGG 2234
Query 2340 AATTTCGGGATTTCTTGCAGAGTCTTCCTTAACTAGTTATCTTGAAAAGCTAACAGTGGA 2399
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2235 AATTTCGGGTTTTCTTGCAGAGTCTTCCTTAACTAGTTATCTTGAAAAGCTAACAGTGGA 2294
Query 2400 CTCAAAGGAAAATAGCCCTGCCAACTCTTGTGGAGAAAAAGCTGTTCAAACAGTCTCTGA 2459
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 2295 CTCAAAGGAAAATAGCCCTGCCAACTCTTCTGGAGCAAAAGCTGTTCAAACAGTCTCTGA 2354
Query 2460 GCGAACCGCTGCTCCTATGACCTATGGCGATGTACCAGAGAAACTTTCCTTGAAGGATTC 2519
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 2355 GCGAACCGCTGCTCCTATGAGCTATGGCGATGTACCAGAAAAACTTTCCTTGAAGGATTC 2414
Query 2520 ACTTACTGCTGTCCGTAATGCTACGCAAGCGGCTGATCGTCTCCATCAAGTATTCAGGAT 2579
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2415 ACTTACCGCTGTCCGTAATGCTACACAAGCGGCTGATCGTCTCCATCAAGTATTCAGGAT 2474
Query 2580 GCAATCATTCCAACGGAAACAGCTGTGTGATATTGGCGATGATGAAAAGATTGATATCTC 2639
|||||||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||||
Sbjct 2475 GCAATCATTCCAGCGGAAACAGCTGTCTGATATCGGCGATGATGACAAGATTGATATCTC 2534
Query 2640 CGACCAGTTAGCTGTTTCTTTTGCAGCTTCT-AAAACTAAGAATCCAGGACAGGGTGATG 2698
||| |||||||||||||||||||| ||| | ||||||||||||| ||||||||||||||
Sbjct 2535 CGATAAGTTAGCTGTTTCTTTTGCAACTT-TGAAAACTAAGAATCTAGGACAGGGTGATG 2593
Query 2699 TCTCTCTTAGTTGTGCTGCTACCCATATCCAGAAGAAATATCGTGGTTGGAAGAAGAGAA 2758
| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2594 TTTCTCTTAGTTCTGCTGCCACCCATATCCAGAAGAAATATCGTGGTTGGAAGAAGAGAA 2653
Query 2759 AAGAGTTTCTTTTAATCCGACAAAGAATCGTTAAAATTCAGGCTCATGTGAGAGGACATC 2818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2654 AAGAGTTTCTTTTAATCCGACAAAGAATCGTTAAAATTCAGGCTCATGTGAGAGGACATC 2713
Query 2819 AGGTCCGGAAACAATACCGAACAGTCATCTGGTCTGTGGGATTACTCGAGAAAATCATTT 2878
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2714 AGGTCCGGAAACAATACCGAACAGTCATCTGGTCTGTGGGATTACTCGAAAAAATCATTT 2773
Query 2879 TGCGTTGGAGACGCAAAGGTAATGGTTTGAGAGGGTTTAAACGCAATGCAGTCGCCAAAA 2938
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2774 TGCGTTGGAGACGCAAAGGTAATGGCTTGAGAGGGTTTAAACGCAATGCAGTCGCCAAAA 2833
Query 2939 CCGTGGAACCGGAACCGCCTGTATCAGCTATATGTCCTAGGATCCCACAGGAAGATGAGT 2998
|||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||
Sbjct 2834 CCGTGGAACCGGAACCACCTGTATCAGCTATATGTCCCACAATCCCACAGGAAGATGAGT 2893
Query 2999 ATGATTATCTTAAAGAGGGAAGAAAACAAACAGAGGAAAGGCTACAGAAGGCTCTGACTC 3058
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2894 ATGATTATCTTAAAGAGGGAAGAAAACAAACAGAGGAAAGGCTTGAGAAGGCTCTGACTC 2953
Query 3059 GTGTTAAGTCGATGGTTCAATACCCAGAAGCACGGGATCAATACCGTAGACTCCTAACGG 3118
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2954 GGGTGAAGTCGATGGTTCAATACCCAGAAGCACGGGATCAATACCGTAGACTCCTAACGG 3013
Query 3119 TTGTTGAGGGCTTCCGTGAAAATGAGGCTTCATCAAGTGCATCTATAAACAATAAAGAAG 3178
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3014 TTGTCGAGGGCTTCCGTGAAAATGAGGCTTCATCAAGTGCATCTATAAACAATAAAGAAG 3073
Query 3179 AAGAAGCAGTCAACTGTGAAGAAGACGATTTTATTGACATTGAGTCTCTTTTGAACGATG 3238
|||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 3074 AAGAAGAAGTCAACTGTGAAGAAGACGAGTTTATTGACATTGACTCTCTTTTGAACGATG 3133
Query 3239 ACACATTGATGATGTCTATTTCTCCTTGattttactttctgactcgtattcatttttcct 3298
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 3134 ACACATTGATGATGTCTATTTCTCCTTGATTTTACATTCTGACTCGTATTCATTTTTC-T 3192
Query 3299 tcttttactttctaactttatttcttctctGTAAATACCATAGTTGATATTTACCGCTTA 3358
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 3193 TCTTTTACTTTCTAACTTTATTTCTTCTCTGTAAATATAATAGTTGATATTTACCGTTTA 3252
Query 3359 ATTTATTACT 3368
||||||||||
Sbjct 3253 ATTTATTACT 3262
Score = 835 bits (452), Expect = 0.0
Identities = 513/542 (95%), Gaps = 5/542 (1%)
Strand=Plus/Plus
Query 78 aaaaaaaTCGGTATCGTTTTCACACCTGGATATAGCCCGAAACGAAGGAAACAAGATTAT 137
|||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1 AAAAAAATCGCTATCGTTTTCACACCTGGATATAGCCCGAAACCAAGGAAACAGGATTAT 60
Query 138 AAGCTTCTCAGTTCATGCATACTCAGATCGGTTAGGGTTCGTTGATTCTCT-TTT-TGAT 195
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 61 AAGCTTCTTAGTTCATGCATACTCAGATCGGTTAGGGTTCGTTGATTCTCTCTTTGTGAT 120
Query 196 TACGAAAGCTTAAGATCTCTTTTGGTGGATTTTTGGGTTTATCCATCTATGGTGGATCGC 255
||||||||||| |||||||||||||| | ||||||||||| | | |||||||||||||||
Sbjct 121 TACGAAAGCTTGAGATCTCTTTTGGTTGTTTTTTGGGTTTTTTCTTCTATGGTGGATCGC 180
Query 256 AGATCTTTTGGCTCTATAACTCCTCCTCTCCAATTAGATATGGAACAGTTGCTGTCAGAA 315
|||||||||||| ||| | |||| | || ||||||||||||||||||||||||||||||
Sbjct 181 GGATCTTTTGGCTTTATTAGTCCT-C-CT-CAATTAGATATGGAACAGTTGCTGTCAGAA 237
Query 316 GCCCAACACAGGTGGCTTAGGCCTACTGAGATTTGTGAAATTCTTCAGAACTATCACAAG 375
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 238 GCTCAACACAGGTGGCTTAGGCCTTCTGAGATTTGTGAAATTCTTCAGAACTATCACAAG 297
Query 376 TTTCATATAGCATCAGAGTCTCCCACCCGACCCGCCAGTGGTTCACTTTTTCTTTTTGAT 435
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 298 TTTCATATAGCATCAGAGTCTCCCACCCGACCCGCCAGTGGTTCACTGTTTCTTTTTGAT 357
Query 436 AGGAAGGTACTGAGATATTTTAGGAAAGACGGACATAACTGGAGGAAGAAGAAAGATGGT 495
|||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 358 AGGAAGGTGCTGAGATATTTTAGGAAAGACGGACATAATTGGAGGAAGAAGAAGGATGGT 417
Query 496 AAAACCATAAGAGAAGCTCATGAGAAGCTCAAGGTAGGAAGCATAGATGTGCTACATTGT 555
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 418 AAAACCATAAAAGAAGCTCATGAGAAGCTCAAGGTAGGAAGCGTAGATGTGCTACATTGT 477
Query 556 TACTATGCACATGGGGAAGCCAACGAGAATTTCCAGAGACGTTGCTACTGGATGCTTGAA 615
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 478 TACTATGCACATGGGGAAGGCAACGAGAATTTTCAGAGACGTTGCTACTGGATGCTTGAA 537
Query 616 CA 617
||
Sbjct 538 CA 539
Score = 459 bits (248), Expect = 8e-128
Identities = 292/311 (94%), Gaps = 11/311 (4%)
Strand=Plus/Plus
Query 710 ATTTGATGCATATCGTTTTTGTGCACTACTTGGAGGTTAAGGGTAACCGGACCAGTATAG 769
||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 542 ATTTGATGCATATCGTTTTCGTACACTACTTGGAGGTTAAGGGTAATCGGACCAGTATAG 601
Query 770 GAATGAAAGAAAACAATTCAAATTCTGTAAATGGCACAGCTTCAGTGAATATTGATTCAA 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 GAATGAAAGAAAACAATTCAAATTCTGTAAATGGCACAGCTTCAGTGAATATTGATTCAA 661
Query 830 CAGCAAGCCCAACTAGCACATTGTCATCATTATGTGAAGATGCTGATACCGTTTTGGTGC 889
| ||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 662 CGGCAAGCCCAACTAGCACATTGTCATCATTATGTGAAGATGCTGATAC--T---GG-G- 714
Query 890 AGGGGATAGTCAACAAGCAAGTTCCGTCTTACGACCATCTCCTGAACCTCAAACTGGAAA 949
| ||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 715 -G---ATAGTCATCAAGCAAGTTCCGTCTTACGAGCATCTTCTGAACCTCAAACTGGAAA 770
Query 950 TCGCTATGGTTGGACACCTGCTCCTGGCATGCGTAATGTTTCACAGGTTCATGGGAACAG 1009
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 771 TCGCTATGGTTGGACACCAGCTCCTGGCATGCGTAATGTTTCACAGGTTCATGGGAACAG 830
Query 1010 AGTCAGAGAAA 1020
|||||||||||
Sbjct 831 AGTCAGAGAAA 841
> Ahg951243 jgi|Araly1|951243|scaffold_803130.1
Length=3229
Score = 161 bits (87), Expect = 3e-38
Identities = 143/169 (85%), Gaps = 7/169 (4%)
Strand=Plus/Plus
Query 713 TGATGCATATCGTTTTTGTGCACTACTTGGAGGTTAAGGGTAACCGGACCAGTAT-AG-G 770
||||||| || ||||| || |||||||||||||||||||||||||||| |||| || |
Sbjct 391 TGATGCACATTGTTTTCGTTCACTACTTGGAGGTTAAGGGTAACCGGATGAGTACCAGTG 450
Query 771 -AA-TGAAAGAAAACAATTCAAATTCTGTAAATGGCACAGCTTCAGTGAATATTGATTCA 828
|| | ||||||||| ||||||||||| | | |||||| | ||| |||||| ||||||||
Sbjct 451 GAACT-AAAGAAAACCATTCAAATTCTTTGAGTGGCACTGGTTCTGTGAATTTTGATTCA 509
Query 829 ACAGCAAGCCCAA-CTAGCACATTGTCATCATTATGTGAAGATGCTGAT 876
||||||| ||| | | |||| ||||||| ||||||||||||||||||||
Sbjct 510 ACAGCAA-CCCGATCCAGCATATTGTCACCATTATGTGAAGATGCTGAT 557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128215963437
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5