BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09430.1
Length=936
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892851 jgi|Araly1|892851|Al_scaffold_0006_847 1552 0.0
> Ahg892851 jgi|Araly1|892851|Al_scaffold_0006_847
Length=936
Score = 1552 bits (840), Expect = 0.0
Identities = 904/936 (97%), Gaps = 0/936 (0%)
Strand=Plus/Plus
Query 1 ATGTTTGATCATATGAAACTGCTGCGATGCTTCAGCTTCACGGCGTCGCGAGATTGGTTA 60
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTTGATCATCTGAAACTGTTGCGATGCTTCAGCTTCACGGCGTCGCGAGATTGGTTA 60
Query 61 TTCCGGCAATCATTCGCAAACGCCGGTCTACGTTCCGTAACGACAGATCTCTCCCACGGC 120
|||||||||||||||||||||||||||||||||||||| || || |||||||| ||||||
Sbjct 61 TTCCGGCAATCATTCGCAAACGCCGGTCTACGTTCCGTCACAACCGATCTCTCTCACGGC 120
Query 121 AATTCAATCGCATCAACAGCTATGCATTGTTGGATTCCTAAATCCCCGAATCGATCTAAA 180
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 121 AATTCAATCGCATCAACAGCTATGCATTGTTGGATCCCTAAATCCCCAAATCGATCTAAA 180
Query 181 CCTAATCTCCTCCTCCTCCACGGATTCGGCGCCAACGCAATGTGGCAATACGGAGAACAT 240
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 CCTAATCTCCTCCTCGTCCACGGATTCGGAGCCAACGCAATGTGGCAATACGGAGAACAT 240
Query 241 CTCCGAGCTTTCACCGGCCGATTCAACGTCTACGTTCCCGATCTCCTCTTCTTCGGGTTA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 CTCCGAGCTTTCACCGGCCGATTCAACGTCTACGTTCCCGATCTCCTCTTCTTCGGATTA 300
Query 301 TCATCCACATCGGAACCAAACCGAACCGAATCTTTCCAGGCTCGGTGTCTGATGAGGTTA 360
|||||||||||||||||||||||| ||||||| |||||||||||||| ||| ||||||||
Sbjct 301 TCATCCACATCGGAACCAAACCGATCCGAATCATTCCAGGCTCGGTGCCTGGTGAGGTTA 360
Query 361 ATGGAAGCGCACGGAGTCCAGAGGATGAACATCGTCGGGATTAGTTACGGTGGATTCGTT 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 ATGGAAGCGCACGGAGTCCAGAGGATGAACATCGTCGGGATTAGCTACGGTGGATTCGTT 420
Query 421 GGGTATAGTTTAGCGGCGCAGTTTCCGGAGAACGTTGAGAAGCTTGTGCTGTGCTGCGCA 480
|||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 421 GGGTATAGTTTAGCGGCGCAGTTTCCGGAGAAAGTAGAGAAGCTTGTGCTATGCTGCGCC 480
Query 481 GGGGTTTGTTTGGAGGAGAAAGATATGGAGGACGGATTGTTTAAGGTGCCGAATCTAGAA 540
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 GGGGTTTGCTTGGAGGAGAAAGATATGGAGGACGGATTGTTTAAGGTACCGAATCTAGAA 540
Query 541 GAAGCTACCGGAATTTTGATTCCTCAGACGCCGGAAAAGCTTAAGGAACTCATAAGATTC 600
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 541 GAAGCTACCGGAATTTTGATTCCTCAGACGCCGGAGAAGCTTAAGGAACTAATAAGATTC 600
Query 601 TCTTTCGTTAAACCAATCAAAGGTGTTCCTTCGTTTTTTCTCTGGGATTTTATCGATGTA 660
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 601 TCTTTCGTTAAGCCAATCAAAGGTGTTCCTTCGTTTTTCCTCTGGGATTTTATCGATGTA 660
Query 661 ATGTGTACGGAGTTTGTAGAGGAGAAGAGAGATTTGATCAAATCAATACTCAAAGATAGG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 661 ATGTGTACGGAGTTTGTAGAGGAGAAGAGAGATTTGATCAAATCAATACTCAAAGATCGG 720
Query 721 AGACTTTCTGATCTTCCTAGGATCAAACAGAAATCGTTGATCATATGGGGAGAAGAAGAT 780
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 721 AGACTTTCAGATCTTCCTAGGATCAAACAGAAATCATTGATCATATGGGGAGAAGAAGAT 780
Query 781 CAAATATTTCCACTGGAACTAGGTTACAGATTAAAAAGACATATAGGAGAGAGTGCAGAG 840
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CAAATATTTCCATTGGAACTAGGTTACAGATTAAAAAGACATATAGGAGAGAGTGCAGAG 840
Query 841 ATAGTGGTGATCAAGAAAGCAGGACATGCTGTGAATTTGGAGAAGTCCAAGGAATTTGTC 900
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATAGTGGTGATCAAGAACGCAGGACATGCTGTGAATTTGGAGAAGTCCAAGGAATTTGTC 900
Query 901 AAGCATTTGAAATCTTTTCTCATTGACTCTTTGTGA 936
|||||||||||||||||||||||||||||||| |||
Sbjct 901 AAGCATTTGAAATCTTTTCTCATTGACTCTTTCTGA 936
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34729977387
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5