BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09440.1
Length=1115
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487757 jgi|Araly1|487757|fgenesh2_kg.6__891__AT5G09440.1 1576 0.0
Ahg951254 jgi|Araly1|951254|scaffold_803141.1 359 3e-98
Ahg918217 jgi|Araly1|918217|Al_scaffold_0008_2968 344 8e-94
> Ahg487757 jgi|Araly1|487757|fgenesh2_kg.6__891__AT5G09440.1
Length=1134
Score = 1576 bits (853), Expect = 0.0
Identities = 1051/1141 (92%), Gaps = 36/1141 (3%)
Strand=Plus/Plus
Query 1 ATATTCAAAAACAGAACACAA---C-CT-CTCT-TCTCACTCTATATACTCCCAAAATGG 54
|||||| ||||||||||| || | || |||| |||| |||||||||||||||||||||
Sbjct 1 ATATTCGAAAACAGAACAAAACCTCTCTGCTCTATCTCTCTCTATATACTCCCAAAATGG 60
Query 55 CTTATAACTACCGTTTTGCCATTCTTCTCGTTCTCCTCTCCGCCACCGTCGGCTT-TACC 113
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 61 CCTATAATTACCGTTTTGCCATTCTTCTCGTTCTCCTCTCCGCCACCGTCGGCTTCT-CC 119
Query 114 GCAGCCGCG-T--T------GAAGCCTCCGGTTCGAACCTTGAACGGAAACATTACTCTT 164
| |||||| | | |||||||||||| | |||||||| |||||||| |||||
Sbjct 120 TCCGCCGCGTTGGTCCAGAAGAAGCCTCCGGTGCCTACCTTGAAAGGAAACATCACTCTC 179
Query 165 AATCTCATTTGGTACGGAAAATTCACCCCAATCCAACGGTCCATAATCGTCGATTTCATC 224
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 180 AATCTCATTTGGTACGGAAAATTCACCCCAATCCAACGGTCCGTAATCGTCGATTTCATC 239
Query 225 CGCTCTATCAGTTCTGTCACCGCCGCCAAAGGTCCATCCGTCGCGTCGTGGTGGAAGACG 284
|||||||||||||| ||| ||||||| |||||||| |||||||||||||||||||||||
Sbjct 240 CGCTCTATCAGTTCCGTCGCCGCCGCAAAAGGTCCCTCCGTCGCGTCGTGGTGGAAGACT 299
Query 285 ACGGAGAAGTACAAAAC-CGGCGTTTCAACTCTTGTTGTCGGTAAACAGCTCCTCCTTGA 343
|||||||||||| |||| || || ||||||||||| |||||||||||||||||||||||
Sbjct 300 ACGGAGAAGTAC-AAACAAGGTGTCTCAACTCTTGTCGTCGGTAAACAGCTCCTCCTTGA 358
Query 344 GAATTACCCTCTCGGAAAATCCCTAAAGAGCCCTTACCTTCGTGCTCTGTCAAGCAAACT 403
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 359 GAACTACCCTCTCGGAAAATCCCTAAAGAGCCCTTACCTTCGTGCTCTATCAAGCAAACT 418
Query 404 TAAC-GCTGGTGGTGCTCGGTCAATAACCGTCGTCTTAACGGCGAAAGACGTCACCGTTG 462
|||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 419 TAACGGC-GGTGGTGCTCGGTCAATAACCGTCGTTTTAACGGCGAAAGACGTCACCGTCG 477
Query 463 AGGGACTCTGTATGAACCGATGCGGGACTCACGGGTCAAAGTCAAGTTCCGTTAACAGTG 522
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 478 AGGGACTCTGTATGAACCGGTGCGGGACTCACGGGTCAAAGTCACGTTCCGTTAACAGTG 537
Query 523 GAGCTTACGTGTGGGTCGGAAACTCTGAAACGCAGTGTCCTGGTTACTGCGCGTGGCCGT 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GAGCTTACGTGTGGGTCGGAAACTCTGAAACGCAGTGTCCTGGTTACTGCGCGTGGCCGT 597
Query 583 TTCATCAGCCTATCTACGGACCTCAGTCTCCGCCGTTAGTCGCACCTAACGGCGACGTCG 642
|||||||||||||||||||||||||| | |||||||||||||| |||||||| |||||||
Sbjct 598 TTCATCAGCCTATCTACGGACCTCAGACCCCGCCGTTAGTCGCGCCTAACGGTGACGTCG 657
Query 643 GAGTTGACGGAATGATTATAAACATCGCGACTCTTCTTGTTAACACCGTAACGAATCCGT 702
|||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 658 GAGTCGACGGAATGATTATAAACCTCGCGACTCTTCTTGTTAACACCGTTACGAATCCGT 717
Query 703 CTCCAGAAGCTGTCTCGGCTTGTACCGGGATATTCGGTTCGGGTGCTTACCCGGGTTACG 762
||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 718 CTCAAGAAGCTGTTTCGGCTTGTACCGGGATATTCGGTTCGGGTGCTTACCCAGGTTACG 777
Query 763 CGGGTCGGGTTCTCGTAGACAAGACGAGTGGAGCGAGTTACAACGCTTTGGGTCTCGCCG 822
||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 778 CGGGTCGGGTTCTTGTAGACAAGACAAGTGGAGCAAGTTACAACGCTTTGGGTCTCGCCG 837
Query 823 GTAGAAAATATCTATTGCCGGCGTTGTGGGATCCTCAGACTTCGACGTGTAAAACTATGG 882
||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||| |||
Sbjct 838 GTAGAAAATATCTTTTGCCGGCGTTGTGGGATCCGCAGACTTCGACGTGTAAGACTTTGG 897
Query 883 TTTGAATTTTAGATGGTCTGTGAACGAGACACGTGGCTAGAATTGATGGTGATT---A-- 937
||||| ||||||| |||| |||||||||||||||||| ||||| |||||||||| |
Sbjct 898 TTTGATTTTTAGACGGTC-GTGAACGAGACACGTGGCAAGAATGGATGGTGATTGCGAGT 956
Query 938 --AAA-GCTTGTTGTAGTCAAAGAAAGTTTGTAGATAT--CTATCGCGTCTGGTTCGGAG 992
||| ||||||||||||||||||||||| |||||||| |||||||||||||||||| |
Sbjct 957 TTAAAAGCTTGTTGTAGTCAAAGAAAGTT-GTAGATATATCTATCGCGTCTGGTTCGGGG 1015
Query 993 TTTGGGGAAAGGGAT-GTGTTTGTTTTGTTATTTTGTTATGCCCTGTGTAAATTCGATCT 1051
||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1016 TTTGGGGAAAGGGATTGTGTTTGTTTTGTCATTTTGTTATGCCCTGT--AAATTCGATCT 1073
Query 1052 TTGGAAATATGTGAAAGATAGATTCATATATCTATTTTAATAATAACGATTTGTAGTTTC 1111
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1074 TTGGAAATATGTGAAATATAGATTCATATATCTATTTTAATAAAAACGATTTGTAGTTTC 1133
Query 1112 C 1112
|
Sbjct 1134 C 1134
> Ahg951254 jgi|Araly1|951254|scaffold_803141.1
Length=959
Score = 359 bits (194), Expect = 3e-98
Identities = 464/589 (79%), Gaps = 40/589 (7%)
Strand=Plus/Plus
Query 143 CTTGAACGGAAACATTACTC-TTAATCTCATTTGGTACGGAAAATTCACCCCAATCCAAC 201
|||||| || ||||| || | |||||||||| |||||||| |||||||| || |||||||
Sbjct 140 CTTGAAAGGTAACATCAC-CGTTAATCTCATCTGGTACGGGAAATTCACACCGATCCAAC 198
Query 202 GGTCCATAATCGTCGATTTCATCCGCT--CT--A-T-C--AGTTCTG-T-CA-CCGCCGC 250
||||| |||||||||| |||||||||| || | | | || | | | || || ||||
Sbjct 199 GGTCCGTAATCGTCGACTTCATCCGCTCGCTCAACTCCAAAG-AC-GTTGCATCCTCCGC 256
Query 251 CAAAGGTCCATCCGTCGCGTCGTGGTGGAAGACGACGGAGAAGTACAAAACCGGCGTT-T 309
| || ||| |||||||||||||||||||||||||||||||| |||||| ||| | |
Sbjct 257 CGCAGTTCCTTCCGTCGCGTCGTGGTGGAAGACGACGGAGAAATACAAAGGCGGA-TCCT 315
Query 310 CAACTCTTGTTGTCGGTAAACAGCTCCTCCTTGAGAATTACCCTCTCGGAAAATCCCTAA 369
|||| || || ||||| |||||||| ||||| ||||| || |||||||||||||| ||||
Sbjct 316 CAACACTCGTCGTCGGGAAACAGCTTCTCCTCGAGAACTATCCTCTCGGAAAATCTCTAA 375
Query 370 AGAGCCCTTACCTTCGTGCTCTGTCAAGCAAA-CTTAACGCTGGTGGTGCTCGGT-CAAT 427
| | ||| |||| |||||| | || | |||| ||||||| | ||| ||| || | ||
Sbjct 376 AAAATCCTCACCTCCGTGCTTTATCCA-CAAAACTTAACG--GC-GGT-CTCCGTTCCAT 430
Query 428 AACCGTCGT-CTTAACGGCGAAAGACGTCACCGTTGAGGGACTCTGTATGAACCGATGCG 486
||||||||| || |||||||||||| || ||||| || || ||||||||| ||| ||||
Sbjct 431 AACCGTCGTTCT-AACGGCGAAAGATGTTACCGTCGAAAGATTCTGTATGAGCCGGTGCG 489
Query 487 GGACTCACGGGTCAA--AG-TC-AA---GT-TC-CGT---TAACAGTG-GAGCTTACGTG 533
| |||||||| || || || || | || || |||| | | | ||||||||
Sbjct 490 GCACTCACGGATCCTCCAGCTCGAAACCGCGTCGCGCAGCTAACGGCGCG-GCTTACGTC 548
Query 534 TGGGTCGGAAACTCTGAAACGCAGTGTCCTGGTTACTGCGCGTGGCCGTTTCATCAGCCT 593
|||||||| ||||| || |||| ||| ||||| || ||||| ||||| ||||| || ||
Sbjct 549 TGGGTCGGGAACTCCGAGACGCTGTGCCCTGGATATTGCGCCTGGCCATTTCACCAACCG 608
Query 594 ATCTACGGACCTCAGTCTCCGCCGTTAGTCGCACCTAACGGCGACGTCGGAGTTGACGGA 653
|| |||||||| || | ||||| |||||||| |||||||| ||||| ||||||||||||
Sbjct 609 ATTTACGGACCACAAACGCCGCCATTAGTCGCGCCTAACGGTGACGTTGGAGTTGACGGA 668
Query 654 ATGATTATAAACATCGCGACTCTTCTTGTTAACACCGTAACGAATCCGT 702
|||||||||||| |||| || ||||| | ||||||||| || |||||||
Sbjct 669 ATGATTATAAACCTCGCCACACTTCTCGCTAACACCGTCACCAATCCGT 717
> Ahg918217 jgi|Araly1|918217|Al_scaffold_0008_2968
Length=858
Score = 344 bits (186), Expect = 8e-94
Identities = 458/583 (79%), Gaps = 44/583 (8%)
Strand=Plus/Plus
Query 153 AACATTACTC-TTAATCTCATTTGGTAC-GGAAAATTCACCCCAATCCAACGGTCCATAA 210
||||| || | |||||||||| |||||| ||||||||||| || || ||||||||| |||
Sbjct 66 AACATCAC-CGTTAATCTCATCTGGTACGGGAAAATTCACACCTATTCAACGGTCCGTAA 124
Query 211 TCGTCGATTTCATCCGCT--CT--A-T-C---AGTTCTG-T-CA-CCGCCGCCAAAGGT- 257
|||||||||||||||||| || | | | || | | | || || ||||| || |
Sbjct 125 TCGTCGATTTCATCCGCTCGCTCAACTCCAAAAG-AC-GTTGCATCCTCCGCCGCAGTTC 182
Query 258 CCAT-CCGTCGCGTCGTGGTGGAAGACGACGGAGAAGTACAAAACCGGCGTT-TCAACTC 315
|| | ||||||||||||||||||||||||||||||| |||||| ||| | ||||| |
Sbjct 183 CCTTCCCGTCGCGTCGTGGTGGAAGACGACGGAGAAATACAAAGGCGGA-TCCTCAACAC 241
Query 316 TTGTTGTCGGTAAACAGCTCCTCCTTGAGAATTACCCTCTCGGAAAATCCCTAAAGAGCC 375
| || ||||| |||||||| ||||| ||||| || |||||||||||||| ||||| | |
Sbjct 242 TCGTCGTCGGGAAACAGCTTCTCCTCGAGAACTATCCTCTCGGAAAATCTCTAAAAAATC 301
Query 376 CTTACCTTCGTGCTCTGTCAAGCAAA-CTTAACGCTGGTGGTGCTCGGT-CAATAACCGT 433
|| |||| |||||| | || | |||| ||||||| | ||| ||| || | ||||||||
Sbjct 302 CTCACCTCCGTGCTTTATCCA-CAAAACTTAACG--GC-GGT-CTCCGTTCCATAACCGT 356
Query 434 CGT-CTTAACGGCGAAAGACGTCACCGTTGAGGGACTCTGTATGAACCGATGCGGGACTC 492
||| || |||||||||||| || ||||| || || ||||||||| ||| ||||| ||||
Sbjct 357 CGTTCT-AACGGCGAAAGATGTTACCGTCGAAAGATTCTGTATGAGCCGGTGCGGCACTC 415
Query 493 ACGGGTCAA--AG-TC-AA---GT-TC-CGT---TAACAGTG-GAGCTTACGTGTGGGTC 539
|||| || || || || | || || |||| | | | |||||||| ||||||
Sbjct 416 ACGGATCCTCCAGCTCGAAACCGCGTCGCGCAGCTAACGGCGCG-GCTTACGTCTGGGTC 474
Query 540 GGAAACTCTGAAACGCAGTGTCCTGGTTACTGCGCGTGGCCGTTTCATCAGCCTATCTAC 599
|| ||||| || |||| ||| ||||| || ||||| ||||| ||||| || || || |||
Sbjct 475 GGGAACTCCGAGACGCTGTGCCCTGGATATTGCGCCTGGCCATTTCACCAACCGATTTAC 534
Query 600 GGACCTCAGTCTCCGCCGTTAGTCGCACCTAACGGCGACGTCGGAGTTGACGGAATGATT 659
||||| || | ||||| |||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 535 GGACCACAAACGCCGCCATTAGTCGCGCCTAACGGTGACGTTGGAGTTGACGGAATGATT 594
Query 660 ATAAACATCGCGACTCTTCTTGTTAACACCGTAACGAATCCGT 702
|||||| |||| || ||||| | ||||||||| ||||||||||
Sbjct 595 ATAAACCTCGCCACACTTCTCGCTAACACCGTCACGAATCCGT 637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41553979530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5