BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09450.1
Length=1640
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487758 jgi|Araly1|487758|fgenesh2_kg.6__892__AT5G09450.1 2266 0.0
> Ahg487758 jgi|Araly1|487758|fgenesh2_kg.6__892__AT5G09450.1
Length=1573
Score = 2266 bits (1227), Expect = 0.0
Identities = 1448/1554 (93%), Gaps = 17/1554 (1%)
Strand=Plus/Plus
Query 7 CTCGAAGTAAGTGATCGGTTTTTAGATCTTTTTGGTCTCTTCAGTCGGAACTGAAAATTC 66
||| ||||||| ||| |||||||||||||||||||| || || | ||||||| || ||
Sbjct 1 CTCCAAGTAAGAGATGGGTTTTTAGATCTTTTTGGT-GGTT-AGAC-GAACTGAGAA-TC 56
Query 67 -ATGGCGACTCGCTCGCTCTTCCATAGTCTTAGATGTCGATTGACGAATAATGGTGTTCT 125
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 57 TATGGCGACTCGCTCGCTCTTCCATAGTCTTAGATGTCGATTGACGAATAATGGTCTTCT 116
Query 126 CGGAAGCAATTTCATTCGAAACGCCGAA---TCGTCACGATTCTCCAAGTCGTACAATGC 182
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 117 CGGAAGCAATTTCATTCGGAACGCCGAATCGTCGTCACGATTCTCCAAGTCGTACAATGC 176
Query 183 TGACGCAGCAATCGGAAACTCCCTTGTCGAGGAATCGGAGGAGAAAGACGATCTGAAGAG 242
||| ||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 177 TGATGCAGCTATCGGAGGCTCCCTTGTTGAGGAATCGGAGGAGAAAGACGATCTGAAGAG 236
Query 243 CAGGATTTTCAGATTGAGACTTCCGAAACGTAGCGCGACTACTGTTCTCGAGAAATGGAT 302
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
Sbjct 237 CAGGATTTTCAGATTGAGACTTCCCAAACGGAGCGCGACTACTGTTCTCGAGAAATGGGT 296
Query 303 TGGAGAAGGGAATCAAATGACTATCAATGAACTCCGAGAGATCTCCAAAGAGCTTAGGAG 362
||| ||||||||||| || || ||||||||||| ||||||||||| ||||||||||||||
Sbjct 297 TGGTGAAGGGAATCAGATTACGATCAATGAACTTCGAGAGATCTCTAAAGAGCTTAGGAG 356
Query 363 AACTCGCCGTTACAAGCACGCTCTTGAGGTTACAGAGTGGATGGTACAGCATGAAGAATC 422
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 357 AACTCGGCGTTACAAGCACGCTCTTGAGGTTACAGAGTGGATGGTTCAGCATGAAGAATC 416
Query 423 AAAGATCTCAGATGCTGATTACGCCTCACGCATAGATCTGATTTCAAAAGTTTTCGGGAT 482
|||| ||||||||||||||||||| || || |||||||| ||||||||||||||||||||
Sbjct 417 AAAGGTCTCAGATGCTGATTACGCGTCGCGGATAGATCTCATTTCAAAAGTTTTCGGGAT 476
Query 483 CGATGCAGCTGAACGCTACTTTGAAGGTCTGGATATAGATTCAAAGACAGCTGAAACCTA 542
|||||| |||||||||||||||||||||||| |||||||| |||||||| ||||||||||
Sbjct 477 CGATGCGGCTGAACGCTACTTTGAAGGTCTGCATATAGATGCAAAGACAACTGAAACCTA 536
Query 543 TACTTCTCTCCTTCATGCTTATGCTGCCTCCAAACAAACCGAACGAGCCGAGGCCTTGTT 602
||| |||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct 537 TACCTCTCTCCTTCATGCTTATGCTGGCTCCAAACAAACCGACCGAGCTGAGGCCTTGTT 596
Query 603 CAAGAGAATCATTGAGAGTGATAGTCTCACTTTTGGTGCCATCACATACAACGAGATGAT 662
||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 597 CAAGAGAATCATTGAGACTGATAGTCTCAGTTTCGGTGCCATCACATACAACGAGATGAT 656
Query 663 GACTTTATACATGTCAGTTGGGCAAGTTGAGAAAGTACCTGAGGTTATTGAAGTGTTAAA 722
|||||||||||||||||| || ||||||||||||||||| |||||||| ||||||||||
Sbjct 657 GACTTTATACATGTCAGTCGGACAAGTTGAGAAAGTACCCGAGGTTATCCAAGTGTTAAA 716
Query 723 GCAGAAAAAGGTTTCTCCGGATATTTTTACTTATAATTTGTGGCTAAGTTCATGTGCTGC 782
||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 717 GCACAAAAAGGTTTCTCCGGATATTTTTACTTACAATTTGTGGTTAAGTTCATGTGCTGC 776
Query 783 AACCTTTAATATAGATGAGCTTAGAAAGATTCTTGAAGAGATGAGGCATGATGCTAGTTC 842
|||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 777 AACCTTTAATATAGATGAACTCAGAAGGATTCTTGAAGAGATGAGGCATGATGCTAGTTC 836
Query 843 CAATGAGGGTTGGGTTCGGTATATCGATCTTACTAGCATCTACATAAACAGTAGTAGAGT 902
|||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||
Sbjct 837 CAATGAGGGTTGGGTTCGATATATCAATCTTACTAGCATCTATATAAACAGTAGTAGAGT 896
Query 903 AACTAATGCAGAGTCTACTTTGCCTGTCGAAGCTGAGAAATCTATTTCGCAAAGAGAATG 962
|||||||||||||||| | || || || ||||||||||||||||||||||||||||||||
Sbjct 897 AACTAATGCAGAGTCTGCCTTACCCGTAGAAGCTGAGAAATCTATTTCGCAAAGAGAATG 956
Query 963 GATCACATATGACTTCCTTATGATTCTGCACACTGGTCTAGGGAACAAGGTTATGATAGA 1022
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 957 GATCACATATGACTTCCTTATGATTCTGCACACTGGACTAGGGAACAAGGTTATGATTGA 1016
Query 1023 TCAGATTTGGAAGTCTTTGAGAAACACCAACCAGATATTGAGTAGTAGAAGCTACATTTG 1082
|||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1017 TCAGATTTGGAAATCTTTGGGAAACACCAACCAGAAATTGAGTAGTAGAAGCTACATTTG 1076
Query 1083 TGTTCTTTCATCTTATCTAATGCTTGGTCATTTGAGAGAAGCCGAGGAGATTATCCATCA 1142
||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1077 TGTCCTTTCATCTTATCTAATGCTGGGTCATATGAGAGAAGCCGAGGAGATTATCCATCA 1136
Query 1143 GTGGAAAGAGTCTAAAACGACAGAGTTTGATGCTTCTGCTTGCTTGAGGATCTTGAATGC 1202
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GTGGAAGGAGTCTAAAACGACAGAGTTTGATGCTTCTGCTTGCTTGAGGATCTTGAATGC 1196
Query 1203 TTTTCGAGATGTTGGTTTAGAGGGAATAGCCAGCGGCTTTCACTTGATCTTGGTGCATAA 1262
|||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||| |
Sbjct 1197 TTTTCGAGATGTCGGTTTAGAGGGAGTAGCCAGCGGCTTTCACTTGCTCTTGGTGCATTA 1256
Query 1263 CAAATGCAGCTTGGAGAATGAAGGATCATCTTAAGATGG--------AGAAATAAGTTGG 1314
||||||||||||||||||||||| || |||||||||||| ||||||||||||
Sbjct 1257 CAAATGCAGCTTGGAGAATGAAGTATTATCTTAAGATGGGGTCTCTGAGAAATAAGTTG- 1315
Query 1315 TGAAAATTTTATGCTCTTAGCAAGAAGAATCAGATCAAGCTCATTAATCATGGTGGATGA 1374
||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1316 TGACAATTTTATGCTCTTGGCAAGAAGAATCAGATCAAGCTCATCAATCATGGTGGATGA 1375
Query 1375 ATAAAATAGAGGTTTCTTCTCTTCACTGTGATTCTTAAATATCTTTTTGTTCTTTACGTG 1434
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||
Sbjct 1376 ATAAAATAGAGGTTTCTTCTCTGCACTGTGATTCTTAATTATCTTTTTGTTCTTTTCGTC 1435
Query 1435 GGAGGTCATGAGACACATAGATTTCCTCACCAGAAGATTTTGCTGCATAGTCGGAAGATG 1494
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1436 AGAGGTCATGAGACACATAGATTTGCTCACCAGAATATTTTGCTGCATAGTCGGAAGATT 1495
Query 1495 TGTTTCCTTAGGCAAGGTCCATAACATTTCATATGTAACGTCAAATTTCAAAAA 1548
||||||||||||| ||| |||||||||||||| |||||||||||||||||||||
Sbjct 1496 TGTTTCCTTAGGCCAGGCCCATAACATTTCATGTGTAACGTCAAATTTCAAAAA 1549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61477655430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5