BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09463.1
Length=2546
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940406 jgi|Araly1|940406|scaffold_600950.1 1906 0.0
Ahg940407 jgi|Araly1|940407|scaffold_600951.1 351 1e-95
Ahg496639 jgi|Araly1|496639|fgenesh2_kg.8__2455__AT5G64342.1 283 4e-75
> Ahg940406 jgi|Araly1|940406|scaffold_600950.1
Length=1196
Score = 1906 bits (1032), Expect = 0.0
Identities = 1145/1200 (95%), Gaps = 6/1200 (1%)
Strand=Plus/Plus
Query 847 TTGGCTTAAACTGCAAGAGCATGCCTCTTGATACCAAACAGCAGAAATGGTTGCCATTAG 906
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1 TTGGCTTAAACTGCAAGAGCATGCCTCTTGATACCAGGCAGCAGAAATGGTTGCCATTGG 60
Query 907 GCTTAAATCCTCAAGCTTGTGTCCAGGACAAGGCGACTGAGTATTTCCGTCCTGGAATTC 966
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 61 GCTTAAATCCTCAAGCTTGTGTCCAGGAAAAGGCGACTGAGTCTTTCCGTCCTGGAATTC 120
Query 967 CTTTTCCGGAACTCGGTAAAGTTTATGCAGCTGAGCATCAGTTTCGCTATTTGCAGCCAC 1026
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 CTTTTCCGGAACTCGGTAAAGTATATGCAGCTGAGCATCAGTTTCGCTATTTGCAGCCAC 180
Query 1027 CGTTCCAAGCCTTATTGTCTAGATATGATCAGCAGTCTTGTGGAAAACAAGTTTCATGTT 1086
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGTTCCCAGCCTTATTGTCTAGATATGATCAGCAGTCTTGTGGAAAACAAGTTTCATGTT 240
Query 1087 TGAATGGGCGATCTAGCAACGGTGCTGCTCCAGAGGGGGCACTCAAGTCTTCTCGGAAAA 1146
|||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 TGAACGGGCGATCTAGCTGCGGTGCTGCTCCAGAGGGGGGACTCAAGTCTTCTCGGAAAA 300
Query 1147 GATTTATAGTATTCGATCAGTCGGGAGAGCAGACTCGTTTGTTACAATGTGGATTTCCTC 1206
||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 301 GATTTCTAGTATTCGATCAGTCAGGAGATCAGACTCGTTTGTTACAATGTGGATTTCCTC 360
Query 1207 TGCGGTTTCCTTCTTCTATGGATGCAGAGCGAGGGAACATTCTCGGTGCCCTACACCCAG 1266
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 TGTGGTTTCCTTCTTCTATGGATGCAGAGCGAGGGAACATTCTCGGTTCCCTACACCCAG 420
Query 1267 AGAAAGGGTTTAGTAAAGATCATGCCATTCAAGAAAAGATATTGCAACATGAAGATCATG 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGAAAGGGTTTAGTAAAGATCATGCCATTCAAGAAAAGATATTGCAACATGAAGATCATG 480
Query 1327 AAAATGGCGAAGAAGACTCGGAAATGCACGAAGACACTGAGGAAATCAACGCGTTACTGT 1386
|||||||| ||||| || || |||||||||||||| ||||||||||||||| | ||||
Sbjct 481 TTAATGGCGACGAAGAGTCAGACATGCACGAAGACACCGAGGAAATCAACGCGCTGCTGT 540
Query 1387 ATTCTGATGATGACGATAATGATGATTGGGAAAGTGATGATGAAGTAATGAGCACTGGTC 1446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATTCTGATGATGACGATAATGATGATTGGGAAAGTGATGATGAAGTAATGAGCACTGGTC 600
Query 1447 ACTCTCCATTCACAGTTGAACAACAAGCGTGCAACATAACAACAGAAGAGCTGGATGAAA 1506
||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 601 ACTCTCCATTCCCAGTTGAACAACAAGCGTGCAACAAAACAACAGAAGAACTGGATGAAA 660
Query 1507 CTGAAAGCACTGTTGATGGTCCACTTCTTAAAAGACAGAAACTACTGGACCATTCGTACA 1566
||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 661 CTGAAAGCAGTGTTGATGGTCCACATCTTAAAAGACAGAAACTACTGGACCATTCATACA 720
Query 1567 GAGACTCATCACCATCCCTTGTGGGCACCACTAAAGTCAAAGGCTTATCAGATGAAAACC 1626
|||||||||||| |||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 721 GAGACTCATCACTATCCCTTGTGGGCA-C-C-AAAGTCAAAGGCTTATCAGATGAAAACC 777
Query 1627 TTCCTGAATCAAACATTTCAAGCAAACAAGAAACGGGTTCTGGTTTGAGCGACGAGCAGT 1686
|||||||||| ||||| ||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 778 TTCCTGAATCCAACATCTCAAGCAAACAAGAAACAGGTTCTGGTCTGAGCGACGAGCAGT 837
Query 1687 CAAGAAAAGACAAGATTCACACCGCTCTGAGAATCCTGGAGAGTGTAGTTCCAGGGGCAA 1746
|||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 838 CAAGCAAAGACAAGATTCACACCGCTCTGAGAATCCTCGAGAGTGTAGTTCCGGGGGCAA 897
Query 1747 AGGGAAAAGAAGCTCTTTTACTACTAGACGAAGCCATTGATTACCTCAAGTTGCTGAAGC 1806
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 898 AGGGAAAAGAAGCTCTTTTACTACTAGACGAAGCCATTGATTACCTCCAGTTGCTGAAGC 957
Query 1807 AAAGCTTAAACTCATCAAAGGGTTTGAATAACCATTGGTGAAAAACCTACAACCCC-TTT 1865
||| ||||| ||||||||||||||| || |||||||||||||||||||| |||||| |||
Sbjct 958 AAAACTTAAGCTCATCAAAGGGTTTAAACAACCATTGGTGAAAAACCTAAAACCCCTTTT 1017
Query 1866 TGTC-CTATTGATAAGGCATGTTTGGTTGGTTAAAGAGAAGACATGGGACAAAAGATAAT 1924
|| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1018 TG-CTATATTGATAAGGCATGTTTGGTTGGTTAAAGAGAAGACAAGGGACAAAAGATAAT 1076
Query 1925 CAATGAGGTAAAGGACTGATGAAGAAGATTCTCTCAAATTCATTAACGTGGGTTTGAAAC 1984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CAATGAGGTAAAGGACTGATGAAGAAGATTCTCTCAAATTCATTAACGTGGGTTTGAAAC 1136
Query 1985 AATTAGAACACGCCTGGTGACCCTAGTGGGACCGTATCCACTGTTCATCTAGCTGGATCA 2044
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1137 AATTTGAACACGCCTGGTGACCCTAGTGGGACCTTATCCACTGTTCATCTAGCTGGATCA 1196
> Ahg940407 jgi|Araly1|940407|scaffold_600951.1
Length=207
Score = 351 bits (190), Expect = 1e-95
Identities = 202/207 (98%), Gaps = 3/207 (1%)
Strand=Plus/Plus
Query 500 AGAGTTTGGAAAAGTTATTATTATGGTAAGTCAATCAGCTGGTCAAACAAGATTTCGAAC 559
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 AGAGTTTGGAAAAG---TTATTATGGTAAGTCAATCAGCTGGTCAAACAAGATTTCGAAC 60
Query 560 ATTCAAGTACGAGAACAACGGAGACTCTAGCAGACCAACAATTGTAGTGAGAGTTATTGC 619
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 ATTCAAGTACGAGAACAACGGAGACTCTAGCAGACCAACAATTGTAGTCAGAGTTATTGC 120
Query 620 TTGCTTCCAACCGATGGATAATTGTCAGGCTGAATACTTTAGACATATACTCAAACCAGT 679
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTGCTTTCAACCGATGGATAATTGTCAGGCTGAATACTTTAGACATATACTCAAACCAGT 180
Query 680 GACGTAGTTGGTTTGTGAGCTTGTGTT 706
|||||||||||||||||||||||||||
Sbjct 181 GACGTAGTTGGTTTGTGAGCTTGTGTT 207
> Ahg496639 jgi|Araly1|496639|fgenesh2_kg.8__2455__AT5G64342.1
Length=2447
Score = 283 bits (153), Expect = 4e-75
Identities = 732/991 (74%), Gaps = 121/991 (12%)
Strand=Plus/Plus
Query 520 TTATGGTAAGTCAATCAGCTGGTCAA-ACAAGATTTCGAACATTCAAGTACGAGAACAAC 578
||||||| | |||||| ||||| || |||||||||||| |||| ||||||||| || |
Sbjct 511 TTATGGTGTGCCAATCACCTGGT-AAGACAAGATTTCGAGCATTGAAGTACGAG-AC-A- 566
Query 579 GGAGACTCTAGCAGACCAACAATTGTAGTGAGAGTTATTGCTTGCT-TCCAACCGATGGA 637
||| || ||| || | |||||||||||||||||||||||| |||| | |||||||||||
Sbjct 567 GGAAACGCTAACAAATCAACAATTGTAGTGAGAGTTATTGAATGCTAT-CAACCGATGGA 625
Query 638 TAATTGTCAGGCTGAATACTTTAGACATATACTCAAACCAGTGACGTAGTTGGTTTGTGA 697
|||||| |||||||| ||||| |||| | ||||||||||||| |||||||||||| ||||
Sbjct 626 TAATTGCCAGGCTGAGTACTTCAGACTTCTACTCAAACCAGTCACGTAGTTGGTTGGTGA 685
Query 698 GCTTGT-GTTTGTATTTTTGGAGCTGGCACCttttttctttttGTCTC-TACTTTCTTAT 755
|| | | || |||||| || |||| | ||| |||| || || | ||||||| |
Sbjct 686 TATT-TCG-CTGCATTTTTCGATCTGGGA-----TTT-TTTTCGT-TCGT-CTTTCTTTT 735
Query 756 ACGATTGTT-TCAAGAAA--GAATCAACAAGTGTTGCGTTCCACACATTTGAGCAACAGC 812
|| ||| || |||| ||| | | ||| |||| |||| || ||| || | |||| | | |
Sbjct 736 ACTATT-TTCTCAA-AAAGGGCA-CAAGAAGTATTGCATT-CACTCAATAGAGC-A-A-C 788
Query 813 TTCCACAATCGTATTGTA-TTCCTGTAAAGTTCCCTTG-GCTTAAACTGC-AAGAGCATG 869
|| |||||||| ||||| || | ||||| ||||||| || |||||||| |||||||||
Sbjct 789 TT-AACAATCGTGTTGTACTT--TTTAAAGCTCCCTTGAGC-TAAACTGCTAAGAGCATG 844
Query 870 CCTCTTGATACCAAACAGCAGAAATGGTTGCCAT-TAGGCTTAAATCCTCAAGCTTG-TG 927
||||| ||||| | || | | || ||||| | | ||||||| ||||||| |||| |
Sbjct 845 CCTCTAGATACGAGGCAAC-GGGAT--TTGCC-TCTGGGCTTAAGTCCTCAAACTTGCT- 899
Query 928 TCCAGGACA-AGGCGA-CT-GAGTATTTCCGTCCTGGAATTCCTTTTCCGGAACTCGGTA 984
|| |||| | | || | | | || | ||| ||||||||| ||| | || || || || |
Sbjct 900 TCGAGGATATA-GC-AGGTCG-GTCTGTCCATCCTGGAATCCCTCTCCCTGAGCTTGGGA 956
Query 985 AAGT-TTATGCAGCTGAGCATCAGTTTCGCTATTTGCAG---CCACCGTTCCAAGCCTTA 1040
|| | || ||||||| ||| |||| ||||| ||||||| ||||| |||| | ||
Sbjct 957 AACTATT-TGCAGCTAAGCTTCAGGCTCGCTGTTTGCAGCCACCACCATTCCTTTCTTTG 1015
Query 1041 TTGT-CTAGATATGATCAGCAGTCTTGTGGAAAAC-A-----A--GT-T-TCAT---GT- 1085
||| | || ||||| || |||||| |||||||| | | || | ||| ||
Sbjct 1016 CTGTGC-AGCCATGATAAGGAGTCTTATGGAAAACGATTCTCACGGTCTGACATGCGGTC 1074
Query 1086 TTGAATG-G--GC-GAT-CTAGC-A--AC-GGTGCTGCTCCAGAGGGGGCACTCA-AGTC 1135
||| || | || | | ||| | | || | || ||||| | || ||||| | ||||
Sbjct 1075 TTG-GTGCGCTGCTGCTGCTA-CTACTACTACTACTACTCCACATGGAGCACT-AGAGTC 1131
Query 1136 TTCTCGGAAAAGA-TTTATAG-TATTCGATCAGTCGGGAGAGCAGACTCGTTTGTTACAA 1193
||||| ||||||| ||| | | ||||||||||||| ||| | ||||||||| | ||||||
Sbjct 1132 TTCTCAGAAAAGACTTT-T-GATATTCGATCAGTCAGGAAACCAGACTCGTCTATTACAA 1189
Query 1194 TGTGGATTTCCTCTGCGGTTTCCTTCTTCTAT--GGATGCAGAGCGAGGGAACATTCTCG 1251
||| ||||||||| |||||||| || || || || ||||| | || ||| | ||||
Sbjct 1190 TGTCCATTTCCTCTACGGTTTCCATC-TC-ATGCGGCGGCAGAACCAGTGAA-ACTCTC- 1245
Query 1252 GTGCCCTAC-A--CCCAGAGAAAGGGTTTAGTAAAGATCATGCCATTCAAGAAAAGATAT 1308
|| ||| | ||||||| | ||| || || | | | | ||| || | |
Sbjct 1246 -TGAGTTACAAGGTATAGAGAAA-GCTTT--CAAGGA--A-G--A-TGGTGAAGAG-T-T 1293
Query 1309 TGCAACATGAAGATCATGAAAATGGCGAAGAAGACTCGGAAATGCACGAAGACACTGAGG 1368
|| ||| | | | ||| | || | ||| ||| || |||||||| |||||||||||||
Sbjct 1294 TG--ACAAG-A-ACCATTTAGAT-G-GAA-CAGAGTCAGAAATGCATGAAGACACTGAGG 1346
Query 1369 AAATCAACGCGTTACTGTATTC---TGATG---ATGACGATAATGATGATTGGGAAAGTG 1422
| ||||| || || |||||||| ||||| |||| ||| |||||||||| || ||||
Sbjct 1347 AGATCAATGCATTGCTGTATTCAGATGATGATTATGATGATGATGATGATTGTGAGAGTG 1406
Query 1423 ATGATGAAGTAATGAGCACTGGTCACTCTCC 1453
|||||||||||||||||||||||||||||||
Sbjct 1407 ATGATGAAGTAATGAGCACTGGTCACTCTCC 1437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95987417400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5