BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09470.1
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892856 jgi|Araly1|892856|Al_scaffold_0006_852 1537 0.0
> Ahg892856 jgi|Araly1|892856|Al_scaffold_0006_852
Length=1017
Score = 1537 bits (832), Expect = 0.0
Identities = 961/1022 (94%), Gaps = 13/1022 (1%)
Strand=Plus/Plus
Query 1 ATGGGCTTCAAACCATTTCTTGAAGGTGGCATCGCCGCAATCATCGCCGGAGCTCTGACT 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTGCTTCAAACCATTTCTTGAAGGTGGCATCGCCGCAATCATCGCCGGAGCTCTGACT 60
Query 61 CACCCATTAGACCTCATCAAAGTCCGTATGCAGCTTCAAGGCGAACATTCTTTCTCGCTC 120
|||||||||||||||||||||||||||||||| || ||||||||||| ||| |||| |||
Sbjct 61 CACCCATTAGACCTCATCAAAGTCCGTATGCAACTCCAAGGCGAACACTCTGTCTCTCTC 120
Query 121 GACCAAAACCCTAACCCTAATCTTAG-CCTTGATCAT-A-A-TCTTCCCGTGAAACCTTA 176
|||||||||||||||||||||||| | ||||||||| | | ||||||||| ||||| ||
Sbjct 121 GACCAAAACCCTAACCCTAATCTT-GTTCTTGATCATAATATTCTTCCCGTTAAACCATA 179
Query 177 CCGACCCGTTTTCGCTCTTGACTCTCTCATCGGCAGCATTTCCTTATTACCCTTA-CACA 235
||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 180 CCGACCCGTTTTCGCTCTTGACTCTCTCATCGGCAGCATTTCCTTATTACCCTCATC-CA 238
Query 236 TTCACGCGCCGTCTTCTTCCACGCGCTCCGTCATGACCCCTTTCGCCGTAGGGGCACACA 295
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 239 TTCACGCGCCGTCTTCTTCCACGCGCTCTGTCATGACCCCTTTCGCCGTTGGGGCACACA 298
Query 296 TTGTCAAAACCGAAGGACCCGCCGCTCTCTTCTCCGGCGTCTCCGCCACCATCCTCCGTC 355
||||||||||||| ||||| ||||||||||||||||| || ||||||||| |||||||||
Sbjct 299 TTGTCAAAACCGACGGACCTGCCGCTCTCTTCTCCGGTGTTTCCGCCACCGTCCTCCGTC 358
Query 356 AGATGCTTTACTCTGCCACCCGTATGGGTATATACGACTTTCTTAAACGAAGGTGGACTG 415
||||||||||||| ||||||||||||||||| ||||||||||| ||| | ||||||||||
Sbjct 359 AGATGCTTTACTCCGCCACCCGTATGGGTATTTACGACTTTCTCAAAAGGAGGTGGACTG 418
Query 416 ATCAACTCACCGGTAACTTCCCATTGGTAACCAAGATCACAGCTGGACTCATCGCAGGAG 475
||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 419 ATCGACTCACCGGTAACTTCCCATTGGTAACCAAGATCACAGCTGGACTCATAGCCGGAG 478
Query 476 CCGTTGGATCAGTCGTCGGGAATCCTGCTGACGTGGCGATGGTGAGAATGCAAGCCGACG 535
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CCGTTGGATCAGTAGTAGGGAATCCTGCTGACGTGGCGATGGTGAGAATGCAAGCCGACG 538
Query 536 GAAGCTTGCCGTTAAACCGTCGCAGAAACTACAAGAGCGTCGTGGACGCGA-TCGA-CAG 593
||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | |
Sbjct 539 GAAGCTTGCCGTTAAACCGTCGCAGAAACTACAAGAGCGTCGTGGACGC-ACTCGAGC-G 596
Query 594 GATCGCAAGGCAAGAAGGCGTTTCAAGTTTATGGCGTGGCTCATGGCTAACCGTGAACCG 653
|||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 597 GATCGCGAGGCAAGAAGGCGTCTCAAGCTTATGGCGTGGCTCGTGGCTAACCGTGAACCG 656
Query 654 TGCCATGATCGTGACAGCTTCTCAGCTCGCTACGTATGATCACGTCAAAGAAATCTTGGT 713
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 657 TGCCATGATCGTGACTGCTTCTCAGCTCGCCACGTATGATCACGTCAAAGAAATCTTGGT 716
Query 714 AGCTGGTGGCCGTGGAACGCCGGGAGGGATAGGAACGCATGTAGCGGCGAGTTTTGCGGC 773
|| ||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 717 CGCCGGTGGACGTGGAACGCCAGGAGGGATCGGAACGCATGTGGCGGCGAGTTTTGCGGC 776
Query 774 GGGGATCGTCGCGGCGGTGGCGTCGAATCCCATCGACGTTGTGAAGACGAGGATGATGAA 833
|||||| ||||| ||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 777 GGGGATTGTCGCAGCGGTGGCGTCAAATCCGATAGACGTTGTGAAGACGAGGATGATGAA 836
Query 834 TGCGGATAAGGAGA-TTTACGGTGGACCGTTGGATTGTGCGGTGAAGATGGTGGCAGAGG 892
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TGCGGATAAGGAGAATTT-CGGTGGACCGTTGGATTGTGCGGTGAAGATGGTGGCAGAGG 895
Query 893 AAGGACCAATGGCTTTGTACAAAGGGCTTGTTCCGACGGCGACGAGGCAAGGACCGTTCA 952
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 896 AAGGACCAATGGCTTTGTATAAAGGGCTTGTTCCGACGGCGACGAGGCAAGGACCGTTCA 955
Query 953 CGATGATCTTGTTCCTTACCTTGGAACAAGTTCGTGGTCTGTTAAAAGACGTTAAATTTT 1012
||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 956 CGATGATATTGTTCCTTACCTTAGAACAAGTTCGTGGTTTGTTAAAAGACGTTAAATTTT 1015
Query 1013 GA 1014
||
Sbjct 1016 GA 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37703564913
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5