BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09480.1
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487764 jgi|Araly1|487764|fgenesh2_kg.6__898__AT5G09480.1 800 0.0
> Ahg487764 jgi|Araly1|487764|fgenesh2_kg.6__898__AT5G09480.1
Length=654
Score = 800 bits (433), Expect = 0.0
Identities = 563/622 (91%), Gaps = 23/622 (4%)
Strand=Plus/Plus
Query 3 CAAAACACAAACTCTCTATACTCACAACATTGTTTAACTCATCTTTCTAAGTTGGTTTCG 62
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1 CAAAACACAAACTCTCTATATTCACAACATTATTTAACTCATCTTTCTAAGTTGGTTTCC 60
Query 63 ATTCAAGAATATCACAATGACTAATGTTCGCCTTCCTATTCTCGTCTCCTCGGTCTTGTT 122
||||||||||||| |||||| ||||||||||||||||||||| ||||| ||||| || ||
Sbjct 61 ATTCAAGAATATCGCAATGATTAATGTTCGCCTTCCTATTCTTGTCTCTTCGGTTTTTTT 120
Query 123 CCTTGTCTTTATTTCATCGTCCCTCTTGTTCCCTACACCTAGTTTTGCTGCTAGAGTAAG 182
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 CCTTGTCTTTATTTCGTCGTCCCTCTTGTTCGCTACACCTAGTTTTGCTGCTAGAGTAAG 180
Query 183 TCATTCTCTGGTGCAAGAAGAGGTCAAAAAGGTTCCAGAATACACAGAACCTGAGGAGCC 242
||| ||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 181 TCAATCTCTGGTGCATGAAGAGGTCACAAAGATTCCAGAATACACAGAACCTGAGGAGCC 240
Query 243 GGA-AGTTCCAGAAGAGCCGGAGCTGCCCTCACCGGAGGAGCCTGAGATTCCAGAAGAGC 301
||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 241 GGAGA-TTCCAGAAGAGCCGGAGCTGCCGTCACCGGAGGAGCCTGAGATTCCAGAAGAAC 299
Query 302 CTGAGATTCCAGAAGAGCCTGAGGTTCCTGGAGAACCCGAAGTTCCTGAAGAGCCCGAAG 361
| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 300 CAGAGATTCCAGAAGAGCCTGAGGTTCCTGGGGAACCCGAAGTTCCTGAGGAGCCCGAAG 359
Query 362 AACCAGAAGAGCCAGAAGGGTCAACATTTGAATTTCCATCATGGTTTCCGAGCTTTCCTA 421
||||||||| ||||||| | || || |||||||||||| ||||||||||||||
Sbjct 360 AACCAGAAGGGCCAGAA---T-----TTGGA-TTTCCATCATGGATTCCGAGCTTTCCT- 409
Query 422 TTCCC-GGTGTTAATGGCGGTTTGCCAAAGACTGAAAAGACAAAACCTACATCAACAGTT 480
||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
Sbjct 410 TTCCCCGGTGTTAATGGCGGTTTACCAAAGAGTGAAAAGACAAAACCTACATCAACAGCT 469
Query 481 GAAGAGGTTAACGTTTCTAACAAGAAGCCATAGATCAATGGGTAAAGAACGTCAAATG-A 539
||||| ||||||| |||||||||||||||||||||||| |||| |||||||||||| | |
Sbjct 470 GAAGAAGTTAACGGTTCTAACAAGAAGCCATAGATCAACGGGTGAAGAACGTCAAAAGGA 529
Query 540 TTATATAAACTATATATGCAAT--TATA----GTTTTGGTTTGTGTTTGGTTAAAGATGA 593
|||||||| |||||||||||| |||| |||||||| ||||||| ||||||||||
Sbjct 530 TTATATAAG-TATATATGCAATAATATATATAGTTTTGGT--GTGTTTGATTAAAGATGA 586
Query 594 GAGATTACATATGTATTACAGT 615
|||| ||| ||||||||| |||
Sbjct 587 GAGAATACTTATGTATTAGAGT 608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28782802335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5