BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09490.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892858 jgi|Araly1|892858|Al_scaffold_0006_854 715 0.0
Ahg494640 jgi|Araly1|494640|fgenesh2_kg.8__456__AT5G43640.1 444 4e-124
Ahg497418 jgi|Araly1|497418|fgenesh2_kg.390__2__AT5G43640.1 135 3e-31
> Ahg892858 jgi|Araly1|892858|Al_scaffold_0006_854
Length=459
Score = 715 bits (387), Expect = 0.0
Identities = 435/459 (95%), Gaps = 0/459 (0%)
Strand=Plus/Plus
Query 63 ATGGCTGAAGTCGAACCAGATGTTTCCGCAGCTGCTCTTGCGAAGAAGAGAACGTTCAAA 122
|||||| |||||||| |||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTCAAGTCGAATCAGAGGTTTCCACAGCTGCTCTTGCGAAGAAGAGAACGTTCAAA 60
Query 123 AAGTTTTCCTTCAAAGGAGTCGATCTCGATGCTCTTCTTGACATGCCCACTGATGATCTT 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGTTTTCCTTCAAAGGAGTCGATCTCGATGCTCTTCTTGACATGCCCACTGATGATCTT 120
Query 183 GTCGAGCTCTTCCCTTCCCGTATAAGAAGAAGGATGAGTAGAGGATTAACGAGGAAGCCT 242
||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 GTCAAGCTCTTCCCTGCCCGTATAAGAAGAAGGATGAGTAGAGGATTGACGAGGAAGCCT 180
Query 243 ATGGCTCTCATCAAGAAATTGCGCAAAGCGAAACTAGATGCACCAGCTGGTGAGAAGCCC 302
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 181 ATGGCTCTCATCAAGAAATTGCGCAAAGCGAAATTAGAAGCACCAGCTGGTGAGAAGCCA 240
Query 303 GAAGTAGTGAGAACCCATCTAAGGAACATGGTGATTATGCCTGAAATGATTGGAAGCATC 362
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAAGTAGTGAGAACACATCTAAGGAACATGGTGATTATGCCTGAAATGATTGGAAGCATC 300
Query 363 ATTGGTGTGTACAATGGAAAGACTTTTAACCAAATCGAGATCAAACCGGAGATGATTGGA 422
|| ||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 301 ATCGGTGTGTACAACGGAAAGACTTTTAACCAAATCGAGATCAAGCCTGAGATGATTGGA 360
Query 423 CATTACCTTGCGGAATTCTCAATCACTTACAAACCCGTTAGGCACGGCAAGCCCGGTCAT 482
||||||||||| |||||||| ||| | ||||| || |||| |||||||| |||||||||
Sbjct 361 CATTACCTTGCTGAATTCTCTATCTCGTACAAGCCAGTTAAGCACGGCAGGCCCGGTCAA 420
Query 483 GGTGCTACACACTCCTCTAGGTTTATCCCTCTCAAGTGA 521
|||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGTGCTACACACTCCTCTAGGTTTATCCCTCTCAAGTGA 459
> Ahg494640 jgi|Araly1|494640|fgenesh2_kg.8__456__AT5G43640.1
Length=459
Score = 444 bits (240), Expect = 4e-124
Identities = 390/463 (84%), Gaps = 8/463 (2%)
Strand=Plus/Plus
Query 63 ATGGCTGAAGTCGAACCAGATGTTTCCGCAGCTGCTCTTGCGAAGAAGAGAACGTTCAAA 122
||||| || || |||||||| ||| | || |||| || ||| ||||||||||||||
Sbjct 1 ATGGCGGATGTGGAACCAGAGGTTGCTGCGGCTGGAATTATGAAAAAGAGAACGTTCAAG 60
Query 123 AAGTTTTCCTTCAAAGGAGTCGATCTCGATGCTCTTCTTGACATGCCCACTGATGATCTT 182
|||||||| |||| |||||||||||||||||| ||||| |||||| |||| |||||||||
Sbjct 61 AAGTTTTCTTTCAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCACCGATGATCTT 120
Query 183 GTCGAGC-TCTTCCCTTCCCGTATAAGAAGAAGGATGAGTAGAGGATTAACGAGGAAGCC 241
||| ||| | ||| | | ||| | | |||||| | ||||||||| || ||||| ||
Sbjct 121 GTCAAGCAT-TTCAGTGCTCGTGTTCGCAGAAGGTTCTCTAGAGGATTGACCAGGAAACC 179
Query 242 TATGGCTCTCATCAAGAAATTGCGCAAAGCGAAACTAGATGCACCAGCTGGTGAGAAGCC 301
||||||| | |||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 180 TATGGCTTTGATCAAGAAATTGCGCAAAGCGAAAATAGAGGCACCAGCTGGTGAGAAGCC 239
Query 302 CGAAGTAGTGAGAACCCATC-TAAGGAACATGGTGATTATGCCTGAAATGATTGGAAGCA 360
| || ||||||||| || | | ||||||||| | ||| ||||||||||||||||||| |
Sbjct 240 AGCAGCAGTGAGAACACA-CTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAAGTA 298
Query 361 TCATTGGTGTGTACAATGGAAAGACTTTTAACCAAATCGAGATCAAACCGGAGATGATTG 420
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 299 TCATTGGTGTGTACAACGGAAAGACTTTTAACCAAGTCGAGATCAAACCGGAGATGATTG 358
Query 421 GACATTACCTTG-CGGAATTCTCAATCACTTACAAACCCGTTAGGCACGGCAAGCCCGGT 479
|||||||| ||| | |||||||||||| | |||||||| |||| ||| || | ||| |||
Sbjct 359 GACATTAC-TTGGCTGAATTCTCAATCTCCTACAAACCGGTTAAGCATGGTAGGCCTGGT 417
Query 480 CATGGTGCTACACACT-CCTCTAGGTTTATCCCTCTCAAGTGA 521
||||||||| || | |||| |||||||| ||||||||||||
Sbjct 418 GTTGGTGCTAC-CAATTCCTCCAGGTTTATTCCTCTCAAGTGA 459
> Ahg497418 jgi|Araly1|497418|fgenesh2_kg.390__2__AT5G43640.1
Length=420
Score = 135 bits (73), Expect = 3e-31
Identities = 111/129 (86%), Gaps = 4/129 (3%)
Strand=Plus/Plus
Query 395 AATCGAGATCAAACCGGAGATGATTGGACATTACCTTG-CGGAATTCTCAATCACTTACA 453
|||||||||||||||||||||||||||||||||| ||| | |||||||||||| | ||||
Sbjct 294 AATCGAGATCAAACCGGAGATGATTGGACATTAC-TTGGCTGAATTCTCAATCTCCTACA 352
Query 454 AACCCGTTAGGCACGGCAAGCCCGGTCATGGTGCTACACACT-CCTCTAGGTTTATCCCT 512
|||| |||| ||| || | ||| ||| ||||||||| || | |||| |||||||| |||
Sbjct 353 AACCGGTTAAGCATGGTAGGCCTGGTGTTGGTGCTAC-CAATTCCTCCAGGTTTATTCCT 411
Query 513 CTCAAGTGA 521
|||||||||
Sbjct 412 CTCAAGTGA 420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25084879386
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5