BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G09490.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value Ahg892858 jgi|Araly1|892858|Al_scaffold_0006_854 715 0.0 Ahg494640 jgi|Araly1|494640|fgenesh2_kg.8__456__AT5G43640.1 444 4e-124 Ahg497418 jgi|Araly1|497418|fgenesh2_kg.390__2__AT5G43640.1 135 3e-31 > Ahg892858 jgi|Araly1|892858|Al_scaffold_0006_854 Length=459 Score = 715 bits (387), Expect = 0.0 Identities = 435/459 (95%), Gaps = 0/459 (0%) Strand=Plus/Plus Query 63 ATGGCTGAAGTCGAACCAGATGTTTCCGCAGCTGCTCTTGCGAAGAAGAGAACGTTCAAA 122 |||||| |||||||| |||| |||||| |||||||||||||||||||||||||||||||| Sbjct 1 ATGGCTCAAGTCGAATCAGAGGTTTCCACAGCTGCTCTTGCGAAGAAGAGAACGTTCAAA 60 Query 123 AAGTTTTCCTTCAAAGGAGTCGATCTCGATGCTCTTCTTGACATGCCCACTGATGATCTT 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AAGTTTTCCTTCAAAGGAGTCGATCTCGATGCTCTTCTTGACATGCCCACTGATGATCTT 120 Query 183 GTCGAGCTCTTCCCTTCCCGTATAAGAAGAAGGATGAGTAGAGGATTAACGAGGAAGCCT 242 ||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 121 GTCAAGCTCTTCCCTGCCCGTATAAGAAGAAGGATGAGTAGAGGATTGACGAGGAAGCCT 180 Query 243 ATGGCTCTCATCAAGAAATTGCGCAAAGCGAAACTAGATGCACCAGCTGGTGAGAAGCCC 302 ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 181 ATGGCTCTCATCAAGAAATTGCGCAAAGCGAAATTAGAAGCACCAGCTGGTGAGAAGCCA 240 Query 303 GAAGTAGTGAGAACCCATCTAAGGAACATGGTGATTATGCCTGAAATGATTGGAAGCATC 362 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GAAGTAGTGAGAACACATCTAAGGAACATGGTGATTATGCCTGAAATGATTGGAAGCATC 300 Query 363 ATTGGTGTGTACAATGGAAAGACTTTTAACCAAATCGAGATCAAACCGGAGATGATTGGA 422 || ||||||||||| ||||||||||||||||||||||||||||| || |||||||||||| Sbjct 301 ATCGGTGTGTACAACGGAAAGACTTTTAACCAAATCGAGATCAAGCCTGAGATGATTGGA 360 Query 423 CATTACCTTGCGGAATTCTCAATCACTTACAAACCCGTTAGGCACGGCAAGCCCGGTCAT 482 ||||||||||| |||||||| ||| | ||||| || |||| |||||||| ||||||||| Sbjct 361 CATTACCTTGCTGAATTCTCTATCTCGTACAAGCCAGTTAAGCACGGCAGGCCCGGTCAA 420 Query 483 GGTGCTACACACTCCTCTAGGTTTATCCCTCTCAAGTGA 521 ||||||||||||||||||||||||||||||||||||||| Sbjct 421 GGTGCTACACACTCCTCTAGGTTTATCCCTCTCAAGTGA 459 > Ahg494640 jgi|Araly1|494640|fgenesh2_kg.8__456__AT5G43640.1 Length=459 Score = 444 bits (240), Expect = 4e-124 Identities = 390/463 (84%), Gaps = 8/463 (2%) Strand=Plus/Plus Query 63 ATGGCTGAAGTCGAACCAGATGTTTCCGCAGCTGCTCTTGCGAAGAAGAGAACGTTCAAA 122 ||||| || || |||||||| ||| | || |||| || ||| |||||||||||||| Sbjct 1 ATGGCGGATGTGGAACCAGAGGTTGCTGCGGCTGGAATTATGAAAAAGAGAACGTTCAAG 60 Query 123 AAGTTTTCCTTCAAAGGAGTCGATCTCGATGCTCTTCTTGACATGCCCACTGATGATCTT 182 |||||||| |||| |||||||||||||||||| ||||| |||||| |||| ||||||||| Sbjct 61 AAGTTTTCTTTCAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCACCGATGATCTT 120 Query 183 GTCGAGC-TCTTCCCTTCCCGTATAAGAAGAAGGATGAGTAGAGGATTAACGAGGAAGCC 241 ||| ||| | ||| | | ||| | | |||||| | ||||||||| || ||||| || Sbjct 121 GTCAAGCAT-TTCAGTGCTCGTGTTCGCAGAAGGTTCTCTAGAGGATTGACCAGGAAACC 179 Query 242 TATGGCTCTCATCAAGAAATTGCGCAAAGCGAAACTAGATGCACCAGCTGGTGAGAAGCC 301 ||||||| | |||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 180 TATGGCTTTGATCAAGAAATTGCGCAAAGCGAAAATAGAGGCACCAGCTGGTGAGAAGCC 239 Query 302 CGAAGTAGTGAGAACCCATC-TAAGGAACATGGTGATTATGCCTGAAATGATTGGAAGCA 360 | || ||||||||| || | | ||||||||| | ||| ||||||||||||||||||| | Sbjct 240 AGCAGCAGTGAGAACACA-CTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAAGTA 298 Query 361 TCATTGGTGTGTACAATGGAAAGACTTTTAACCAAATCGAGATCAAACCGGAGATGATTG 420 |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| Sbjct 299 TCATTGGTGTGTACAACGGAAAGACTTTTAACCAAGTCGAGATCAAACCGGAGATGATTG 358 Query 421 GACATTACCTTG-CGGAATTCTCAATCACTTACAAACCCGTTAGGCACGGCAAGCCCGGT 479 |||||||| ||| | |||||||||||| | |||||||| |||| ||| || | ||| ||| Sbjct 359 GACATTAC-TTGGCTGAATTCTCAATCTCCTACAAACCGGTTAAGCATGGTAGGCCTGGT 417 Query 480 CATGGTGCTACACACT-CCTCTAGGTTTATCCCTCTCAAGTGA 521 ||||||||| || | |||| |||||||| |||||||||||| Sbjct 418 GTTGGTGCTAC-CAATTCCTCCAGGTTTATTCCTCTCAAGTGA 459 > Ahg497418 jgi|Araly1|497418|fgenesh2_kg.390__2__AT5G43640.1 Length=420 Score = 135 bits (73), Expect = 3e-31 Identities = 111/129 (86%), Gaps = 4/129 (3%) Strand=Plus/Plus Query 395 AATCGAGATCAAACCGGAGATGATTGGACATTACCTTG-CGGAATTCTCAATCACTTACA 453 |||||||||||||||||||||||||||||||||| ||| | |||||||||||| | |||| Sbjct 294 AATCGAGATCAAACCGGAGATGATTGGACATTAC-TTGGCTGAATTCTCAATCTCCTACA 352 Query 454 AACCCGTTAGGCACGGCAAGCCCGGTCATGGTGCTACACACT-CCTCTAGGTTTATCCCT 512 |||| |||| ||| || | ||| ||| ||||||||| || | |||| |||||||| ||| Sbjct 353 AACCGGTTAAGCATGGTAGGCCTGGTGTTGGTGCTAC-CAATTCCTCCAGGTTTATTCCT 411 Query 513 CTCAAGTGA 521 ||||||||| Sbjct 412 CTCAAGTGA 420 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25084879386 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5