BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09500.1
Length=652
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487766 jgi|Araly1|487766|fgenesh2_kg.6__900__AT5G09500.1 979 0.0
Ahg494640 jgi|Araly1|494640|fgenesh2_kg.8__456__AT5G43640.1 590 5e-168
Ahg940413 jgi|Araly1|940413|scaffold_600957.1 556 5e-158
Ahg470404 jgi|Araly1|470404|fgenesh2_kg.1__358__AT1G04270.1 479 1e-134
Ahg892858 jgi|Araly1|892858|Al_scaffold_0006_854 466 9e-131
Ahg497418 jgi|Araly1|497418|fgenesh2_kg.390__2__AT5G43640.1 370 7e-102
> Ahg487766 jgi|Araly1|487766|fgenesh2_kg.6__900__AT5G09500.1
Length=623
Score = 979 bits (530), Expect = 0.0
Identities = 581/605 (96%), Gaps = 5/605 (1%)
Strand=Plus/Plus
Query 48 TTC-AGCAATTCCAAACAAACAATGGCGGATCCAGAGGTTGCTGCGGCTGGAATCGTAAA 106
||| || |||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 20 TTCGAGGAATTCCAAACAATCAATGGCGGATCCAGAGGTTGCTGCGGCTGGAATCGTGAA 79
Query 107 AAAGAGAACGTTCAAAAAGTTTTCCTTCAGAGGAGTCGATCTTGATGCTCTTCTCGACAT 166
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 80 AAAGAGAACGTTCAAAAAGTTTTCTTTCAGAGGAGTTGATCTTGATGCTCTTCTCGACAT 139
Query 167 GTCTACTGATGATCTTGTCAAGCTTTTCCCTTCCCGTATCCGTAGAAGGTTCTCTAGAGG 226
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 140 GTCTACTGATGATCTTGTCAAGCTCTTCCCTTCCCGTATCCGTAGAAGGTTCTCTAGAGG 199
Query 227 ATTGACGAGGAAGCCTATGGCTTTGATCAAGAAACTGCGGAAAGCGAAAATTGAAGCACC 286
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 200 ATTGACGAGGAAGCCTATGGCTTTGATCAAGAAACTGCGCAAAGCGAAAATTGAAGCACC 259
Query 287 AGCTGGAGAGAAGCCAGCAGCAGTGAGAACCCACCTAAGGAACATGATCATTGTGCCTGA 346
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 260 AGCCGGAGAGAAGCCAGCAGCAGTGAGAACCCACCTAAGGAACATGGTCATTGTGCCTGA 319
Query 347 AATGATTGGAAGCGTCATCGGTGTTTACAATGGAAAGACTTTTAACCAGGTCGAGATCAA 406
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 320 AATGATTGGAAGCGTCATCGGTGTTTACAATGGAAAGACTTTTAACCAAGTCGAGATCAA 379
Query 407 ACCAGAGATGATTGGACATTACTTGGCTGAGTTTTCAATCTCATATAAGCCTGTTAAGCA 466
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 380 ACCAGAGATGATTGGACATTACTTGGCTGAGTTCTCAATCTCATATAAGCCGGTTAAGCA 439
Query 467 TGGTAGGCCTGGTGTTGGTGCTACCAATTCCTCCAGATTTATCCCTCTCAAGTGAATAAT 526
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 440 CGGTAGGCCTGGTGTTGGTGCTACCAATTCCTCCAGGTTTATCCCTCTCAAGTGAATAAT 499
Query 527 CAAGCTCTTGTGGAG--T-TTTGTTATGCTCTAAATTCGAGtctttcgtttctttttctt 583
||||||||||||||| | |||||||||||| ||||| ||||||||||||||||||| ||
Sbjct 500 CAAGCTCTTGTGGAGAGTCTTTGTTATGCTCAAAATTTGAGTCTTTCGTTTCTTTTTATT 559
Query 584 ttagaacattttgtctttctttttctcttctctcctttagattttGTTCAAACTCTTGTT 643
| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 TG-GAACATTTTGTCTCTCTTTTTCTCTTCTCTCCTTTAGATTTTGTTCAAACTCTTGTT 618
Query 644 CATGC 648
|||||
Sbjct 619 CATGC 623
> Ahg494640 jgi|Araly1|494640|fgenesh2_kg.8__456__AT5G43640.1
Length=459
Score = 590 bits (319), Expect = 5e-168
Identities = 405/448 (90%), Gaps = 0/448 (0%)
Strand=Plus/Plus
Query 74 GGATCCAGAGGTTGCTGCGGCTGGAATCGTAAAAAAGAGAACGTTCAAAAAGTTTTCCTT 133
||| ||||||||||||||||||||||| | ||||||||||||||||| |||||||| ||
Sbjct 12 GGAACCAGAGGTTGCTGCGGCTGGAATTATGAAAAAGAGAACGTTCAAGAAGTTTTCTTT 71
Query 134 CAGAGGAGTCGATCTTGATGCTCTTCTCGACATGTCTACTGATGATCTTGTCAAGCTTTT 193
||||||||||||||| ||||| |||||||||||||| || |||||||||||||||| |||
Sbjct 72 CAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCACCGATGATCTTGTCAAGCATTT 131
Query 194 CCCTTCCCGTATCCGTAGAAGGTTCTCTAGAGGATTGACGAGGAAGCCTATGGCTTTGAT 253
| | | ||| | || ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 132 CAGTGCTCGTGTTCGCAGAAGGTTCTCTAGAGGATTGACCAGGAAACCTATGGCTTTGAT 191
Query 254 CAAGAAACTGCGGAAAGCGAAAATTGAAGCACCAGCTGGAGAGAAGCCAGCAGCAGTGAG 313
||||||| |||| ||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 192 CAAGAAATTGCGCAAAGCGAAAATAGAGGCACCAGCTGGTGAGAAGCCAGCAGCAGTGAG 251
Query 314 AACCCACCTAAGGAACATGATCATTGTGCCTGAAATGATTGGAAGCGTCATCGGTGTTTA 373
||| ||| | ||||||||||||||||||||||||||||||||||| |||| ||||| ||
Sbjct 252 AACACACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAAGTATCATTGGTGTGTA 311
Query 374 CAATGGAAAGACTTTTAACCAGGTCGAGATCAAACCAGAGATGATTGGACATTACTTGGC 433
||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 312 CAACGGAAAGACTTTTAACCAAGTCGAGATCAAACCGGAGATGATTGGACATTACTTGGC 371
Query 434 TGAGTTTTCAATCTCATATAAGCCTGTTAAGCATGGTAGGCCTGGTGTTGGTGCTACCAA 493
||| || |||||||| || || || |||||||||||||||||||||||||||||||||||
Sbjct 372 TGAATTCTCAATCTCCTACAAACCGGTTAAGCATGGTAGGCCTGGTGTTGGTGCTACCAA 431
Query 494 TTCCTCCAGATTTATCCCTCTCAAGTGA 521
||||||||| ||||| ||||||||||||
Sbjct 432 TTCCTCCAGGTTTATTCCTCTCAAGTGA 459
> Ahg940413 jgi|Araly1|940413|scaffold_600957.1
Length=578
Score = 556 bits (301), Expect = 5e-158
Identities = 401/449 (89%), Gaps = 8/449 (2%)
Strand=Plus/Plus
Query 78 CCAGAGGTTGCTGCGGCTGGA-ATCGTAAAAAAGAGAACGTTCAA-AAAGTTTTCCTTCA 135
||||||||||| || || ||| || |||||||||||||||||| ||| || ||||||
Sbjct 83 CCAGAGGTTGCAGCAGCAGGAGTTC-CAAAAAAGAGAACGTTCAAGAAA-TTCGCCTTCA 140
Query 136 GAGGAGTCGATCTTGATGCTCTTCTCGACATGTCTACTGATGATCTTGTCAAGCTTTTCC 195
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 141 GAGGAGTCGATCTCGATGCTCTTCTCGACATGTCTACTGATGATCTTGTCAAGCTCTTCT 200
Query 196 CTTCCCGTATCCGTAGAAGGTTCTCTAGAGGATTGACGAGGAAGCCTATGGCTTTGATCA 255
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 201 CTTCCCGTATTCGTAGAAGGTTCTCTAGAGGATTGACGAGAAAGCCTATGGCTTTGATTA 260
Query 256 AGAAACTGCGGAAAGCGAAAATTGAAGCACCAGCTGGAGAGAAGCCAGCAGCAGTGAGAA 315
||||||| || || ||||||| || ||||||||||| |||||||||| | |||||||||
Sbjct 261 AGAAACTCCGCAAGGCGAAAAGAGAGGCACCAGCTGGTGAGAAGCCAGAACCAGTGAGAA 320
Query 316 CCCACCTAAGGAACATGATCATTGTGCCTGAAATGATTGGAAGCGTCATCGGTGTTTACA 375
||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||
Sbjct 321 CCCACCTAAGGAACATGGTCATTGTGCCTGAAATGATTGGAAGCATCATCGGTGTGTACA 380
Query 376 ATGGAAAGACTTTTAACCAGGTCGAGATCAAACCAGAGATGATTGGACATTAC-TTGGCT 434
||||||||||||| ||||| || |||||||| || |||||||||||||||||| ||| ||
Sbjct 381 ATGGAAAGACTTTCAACCAAGTTGAGATCAAGCCTGAGATGATTGGACATTACCTTG-CT 439
Query 435 GAGTTTTCAATCTCATATAAGCCTGTTAAGCATGGTAGGCCTGGTGTTGGTGCTAC-CAA 493
|| || || ||||| || ||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 440 GAATTCTCTATCTCGTACAAGCCAGTTAAGCACGGTAGGCCTGGTGTTGGTGCTACTCAC 499
Query 494 TTCCTCCAGATTTATCCCTCTCAAGTGAA 522
| ||||||| || ||||||||||||||||
Sbjct 500 T-CCTCCAGGTTCATCCCTCTCAAGTGAA 527
> Ahg470404 jgi|Araly1|470404|fgenesh2_kg.1__358__AT1G04270.1
Length=729
Score = 479 bits (259), Expect = 1e-134
Identities = 385/447 (86%), Gaps = 4/447 (1%)
Strand=Plus/Plus
Query 78 CCAGAGGTTGCTGCGGCTGGAATCG-TAAAAAAGAGAACGTTCAAAAAGTTTTCCTTCAG 136
|||||||||||||| |||||| | | ||| ||||| ||||| || |||||| |||||||
Sbjct 102 CCAGAGGTTGCTGCTGCTGGAGT-GCCAAAGAAGAGGACGTTTAAGAAGTTTGCCTTCAG 160
Query 137 AGGAGTCGATCTTGATGCTCTTCTCGACATGTCTACTGATGATCTTGTCAAGCTTTTCCC 196
|||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct 161 AGGAGTTGATCTCGATGCTCTTCTTGACATGTCTACTGATGATCTTGTCAAGCTCTTCTC 220
Query 197 TTCCCGTATCCGTAGAAGGTTCTCTAGAGGATTGACGAGGAAGCCTATGGCTTTGATCAA 256
||| ||||| || ||||||||||||||||| |||||||||||||| |||||| |||| ||
Sbjct 221 TTCTCGTATTCGCAGAAGGTTCTCTAGAGGTTTGACGAGGAAGCCAATGGCTCTGATTAA 280
Query 257 GAAACTGCGGAAAGCGAAAATTGAAGCACCAGCT-GGAGAGAAGCCAGCAGCAGTGAGAA 315
||| ||| |||||||||||| || |||||| | || |||||||||| | | |||||||
Sbjct 281 GAAGCTGAGGAAAGCGAAAAGGGAGGCACCA-CAAGGTGAGAAGCCAGAACCTGTGAGAA 339
Query 316 CCCACCTAAGGAACATGATCATTGTGCCTGAAATGATTGGAAGCGTCATCGGTGTTTACA 375
||||| | ||||||||| ||||||| ||||| |||||||||||| |||| || |||||||
Sbjct 340 CCCACTTGAGGAACATGGTCATTGTCCCTGAGATGATTGGAAGCATCATTGGAGTTTACA 399
Query 376 ATGGAAAGACTTTTAACCAGGTCGAGATCAAACCAGAGATGATTGGACATTACTTGGCTG 435
|||| |||||||| ||||| ||||||||||| || ||||||||||| || ||| ||||||
Sbjct 400 ATGGTAAGACTTTCAACCAAGTCGAGATCAAGCCTGAGATGATTGGTCACTACCTGGCTG 459
Query 436 AGTTTTCAATCTCATATAAGCCTGTTAAGCATGGTAGGCCTGGTGTTGGTGCTACCAATT 495
|||| || |||||||| ||||| || ||||| |||||||||||||||||||||||| | |
Sbjct 460 AGTTCTCTATCTCATACAAGCCGGTCAAGCACGGTAGGCCTGGTGTTGGTGCTACCCACT 519
Query 496 CCTCCAGATTTATCCCTCTCAAGTGAA 522
| |||||||| || ||||| |||||||
Sbjct 520 CTTCCAGATTCATTCCTCTTAAGTGAA 546
> Ahg892858 jgi|Araly1|892858|Al_scaffold_0006_854
Length=459
Score = 466 bits (252), Expect = 9e-131
Identities = 363/417 (87%), Gaps = 6/417 (1%)
Strand=Plus/Plus
Query 108 AAGAGAACGTTCAAAAAGTTTTCCTTCAGAGGAGTCGATCTTGATGCTCTTCTCGACATG 167
|||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||
Sbjct 46 AAGAGAACGTTCAAAAAGTTTTCCTTCAAAGGAGTCGATCTCGATGCTCTTCTTGACATG 105
Query 168 TCTACTGATGATCTTGTCAAGCTTTTCCCTTCCCGTATCCGTAGAAGGTTCTCTAGAGGA 227
| |||||||||||||||||||| |||||| ||||||| | |||||| | |||||||
Sbjct 106 CCCACTGATGATCTTGTCAAGCTCTTCCCTGCCCGTATAAGAAGAAGGATGAGTAGAGGA 165
Query 228 TTGACGAGGAAGCCTATGGCTTTGATCAAGAAACTGCGGAAAGCGAAAATT-GAAGCACC 286
||||||||||||||||||||| | ||||||||| |||| ||||||||| || ||||||||
Sbjct 166 TTGACGAGGAAGCCTATGGCTCTCATCAAGAAATTGCGCAAAGCGAAA-TTAGAAGCACC 224
Query 287 AGCTGGAGAGAAGCCAGCAGCAGTGAGAACCCACCTAAGGAACATGATCATTGTGCCTGA 346
|||||| |||||||||| || ||||||||| || |||||||||||| | ||| |||||||
Sbjct 225 AGCTGGTGAGAAGCCAGAAGTAGTGAGAACACATCTAAGGAACATGGTGATTATGCCTGA 284
Query 347 AATGATTGGAAGCGTCATCGGTGTTTACAATGGAAAGACTTTTAACCAGGTCGAGATCAA 406
||||||||||||| |||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 285 AATGATTGGAAGCATCATCGGTGTGTACAACGGAAAGACTTTTAACCAAATCGAGATCAA 344
Query 407 ACCAGAGATGATTGGACATTAC-TTGGCTGAGTTTTCAATCTCATATAAGCCTGTTAAGC 465
|| |||||||||||||||||| ||| |||| || || ||||| || ||||| |||||||
Sbjct 345 GCCTGAGATGATTGGACATTACCTTG-CTGAATTCTCTATCTCGTACAAGCCAGTTAAGC 403
Query 466 ATGGTAGGCCTGGTGTTGGTGCTAC-CAATTCCTCCAGATTTATCCCTCTCAAGTGA 521
| || ||||| ||| |||||||| || | |||| || ||||||||||||||||||
Sbjct 404 ACGGCAGGCCCGGTCAAGGTGCTACACACT-CCTCTAGGTTTATCCCTCTCAAGTGA 459
> Ahg497418 jgi|Araly1|497418|fgenesh2_kg.390__2__AT5G43640.1
Length=420
Score = 370 bits (200), Expect = 7e-102
Identities = 256/284 (90%), Gaps = 0/284 (0%)
Strand=Plus/Plus
Query 74 GGATCCAGAGGTTGCTGCGGCTGGAATCGTAAAAAAGAGAACGTTCAAAAAGTTTTCCTT 133
||| ||||||||||||||||||||||| | ||||||||||||||||| |||||||| ||
Sbjct 12 GGAACCAGAGGTTGCTGCGGCTGGAATTATGAAAAAGAGAACGTTCAAGAAGTTTTCTTT 71
Query 134 CAGAGGAGTCGATCTTGATGCTCTTCTCGACATGTCTACTGATGATCTTGTCAAGCTTTT 193
||||||||||||||| ||||| |||||||||||||| || |||||||||||||||| |||
Sbjct 72 CAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCACCGATGATCTTGTCAAGCATTT 131
Query 194 CCCTTCCCGTATCCGTAGAAGGTTCTCTAGAGGATTGACGAGGAAGCCTATGGCTTTGAT 253
| | | ||| | || ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 132 CAGTGCTCGTGTTCGCAGAAGGTTCTCTAGAGGATTGACCAGGAAACCTATGGCTTTGAT 191
Query 254 CAAGAAACTGCGGAAAGCGAAAATTGAAGCACCAGCTGGAGAGAAGCCAGCAGCAGTGAG 313
||||||| |||| ||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 192 CAAGAAATTGCGCAAAGCGAAAATAGAGGCACCAGCTGGTGAGAAGCCAGCAGCAGTGAG 251
Query 314 AACCCACCTAAGGAACATGATCATTGTGCCTGAAATGATTGGAA 357
||| ||| | ||||||||||||||||||||||||||||||||||
Sbjct 252 AACACACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAA 295
Score = 182 bits (98), Expect = 4e-45
Identities = 116/125 (93%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 397 TCGAGATCAAACCAGAGATGATTGGACATTACTTGGCTGAGTTTTCAATCTCATATAAGC 456
||||||||||||| |||||||||||||||||||||||||| || |||||||| || || |
Sbjct 296 TCGAGATCAAACCGGAGATGATTGGACATTACTTGGCTGAATTCTCAATCTCCTACAAAC 355
Query 457 CTGTTAAGCATGGTAGGCCTGGTGTTGGTGCTACCAATTCCTCCAGATTTATCCCTCTCA 516
| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 356 CGGTTAAGCATGGTAGGCCTGGTGTTGGTGCTACCAATTCCTCCAGGTTTATTCCTCTCA 415
Query 517 AGTGA 521
|||||
Sbjct 416 AGTGA 420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23903068959
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5