BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09510.1
Length=1163
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940413 jgi|Araly1|940413|scaffold_600957.1 939 0.0
Ahg494640 jgi|Araly1|494640|fgenesh2_kg.8__456__AT5G43640.1 549 2e-155
Ahg892858 jgi|Araly1|892858|Al_scaffold_0006_854 483 2e-135
Ahg497418 jgi|Araly1|497418|fgenesh2_kg.390__2__AT5G43640.1 357 1e-97
> Ahg940413 jgi|Araly1|940413|scaffold_600957.1
Length=578
Score = 939 bits (508), Expect = 0.0
Identities = 555/578 (96%), Gaps = 1/578 (0%)
Strand=Plus/Plus
Query 54 ATTTGGAAAACGCAAGC-TACCACAGATTTAGAGTTTATCCACCTTATCTTTCGCCGAGA 112
|||||||||||| |||| ||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1 ATTTGGAAAACGTAAGCAGACCACAGATTTAGGGTTTATCCACCTTATCCTTCGCCGAGA 60
Query 113 TCCAACAATGGCTGATGTGGAACCAGAGGTTGCAGCAGCAGGAGTTCCAAAGAAGAGAAC 172
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 TCCAACAATGGCTGATGTCGAACCAGAGGTTGCAGCAGCAGGAGTTCCAAAAAAGAGAAC 120
Query 173 GTTCAAGAAATTCGCCTTCAAAGGAGTCGATCTCGATGCTCTTCTCGACATGTCTACCGA 232
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 121 GTTCAAGAAATTCGCCTTCAGAGGAGTCGATCTCGATGCTCTTCTCGACATGTCTACTGA 180
Query 233 TGATCTTGTCAAGCTCTTCTCTTCCCGTATTCGCAGAAGGTTCTCTAGAGGATTGACGAG 292
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 TGATCTTGTCAAGCTCTTCTCTTCCCGTATTCGTAGAAGGTTCTCTAGAGGATTGACGAG 240
Query 293 AAAGCCTATGGCTTTGATTAAGAAACTCCGCAAGGCGAAAAGAGAGGCACCAGCTGGTGA 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAAGCCTATGGCTTTGATTAAGAAACTCCGCAAGGCGAAAAGAGAGGCACCAGCTGGTGA 300
Query 353 GAAGCCAGAACCAGTGAGAACCCACTTGAGGAACATGATCATTGTGCCTGAAATGATTGG 412
||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||
Sbjct 301 GAAGCCAGAACCAGTGAGAACCCACCTAAGGAACATGGTCATTGTGCCTGAAATGATTGG 360
Query 413 AAGCATCATTGGTGTGTACAATGGAAAGACTTTCAACCAAGTGGAGATCAAGCCTGAGAT 472
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 361 AAGCATCATCGGTGTGTACAATGGAAAGACTTTCAACCAAGTTGAGATCAAGCCTGAGAT 420
Query 473 GATTGGACATTACCTTGCAGAGTTCTCCATCTCGTACAAGCCAGTTAAGCACGGTAGGCC 532
|||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 421 GATTGGACATTACCTTGCTGAATTCTCTATCTCGTACAAGCCAGTTAAGCACGGTAGGCC 480
Query 533 TGGCGTTGGTGCTACCCACTCCTCCAGGTTCATCCCTCTCAAGTGAAGACCATACAGAGT 592
||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 TGGTGTTGGTGCTACTCACTCCTCCAGGTTCATCCCTCTCAAGTGAAGACCTTACAGAGT 540
Query 593 CTGTGTTGTGCTCTTGTTTTGTTAGATCTCATTATGCA 630
|||||||||||||||||||| |||| ||||||||||||
Sbjct 541 CTGTGTTGTGCTCTTGTTTTCTTAGCTCTCATTATGCA 578
> Ahg494640 jgi|Araly1|494640|fgenesh2_kg.8__456__AT5G43640.1
Length=459
Score = 549 bits (297), Expect = 2e-155
Identities = 409/463 (88%), Gaps = 8/463 (2%)
Strand=Plus/Plus
Query 120 ATGGCTGATGTGGAACCAGAGGTTGCAGCAGCAGGAGTT-CCAAAGAAGAGAACGTTCAA 178
||||| |||||||||||||||||||| || || ||| || ||| ||||||||||||||
Sbjct 1 ATGGCGGATGTGGAACCAGAGGTTGCTGCGGCTGGAATTATGAAA-AAGAGAACGTTCAA 59
Query 179 GAAATTCGCCTTCAAAGGAGTCGATCTCGATGCTCTTCTCGACATGTCTACCGATGATCT 238
||| || | |||| |||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 60 GAAGTTTTCTTTCAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCACCGATGATCT 119
Query 239 TGTCAAGC-TCTTCTCTTCCCGTATTCGCAGAAGGTTCTCTAGAGGATTGACGA-GAAAG 296
|||||||| | ||| | | ||| |||||||||||||||||||||||||||| | ||||
Sbjct 120 TGTCAAGCAT-TTCAGTGCTCGTGTTCGCAGAAGGTTCTCTAGAGGATTGACCAGGAAA- 177
Query 297 CCTATGGCTTTGATTAAGAAACTCCGCAAGGCGAAAAGAGAGGCACCAGCTGGTGAGAAG 356
|||||||||||||| |||||| | ||||| ||||||| ||||||||||||||||||||||
Sbjct 178 CCTATGGCTTTGATCAAGAAATTGCGCAAAGCGAAAATAGAGGCACCAGCTGGTGAGAAG 237
Query 357 CCAGAACCAGTGAGAACCCACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAAGC 416
|||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CCAGCAGCAGTGAGAACACACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAAGT 297
Query 417 ATCATTGGTGTGTACAATGGAAAGACTTTCAACCAAGTGGAGATCAAGCCTGAGATGATT 476
||||||||||||||||| ||||||||||| |||||||| |||||||| || |||||||||
Sbjct 298 ATCATTGGTGTGTACAACGGAAAGACTTTTAACCAAGTCGAGATCAAACCGGAGATGATT 357
Query 477 GGACATTACCTTG-CAGAGTTCTCCATCTCGTACAAGCCAGTTAAGCACGGTAGGCCTGG 535
||||||||| ||| | || ||||| ||||| ||||| || |||||||| |||||||||||
Sbjct 358 GGACATTAC-TTGGCTGAATTCTCAATCTCCTACAAACCGGTTAAGCATGGTAGGCCTGG 416
Query 536 CGTTGGTGCTACCCACTCCTCCAGGTTCATCCCTCTCAAGTGA 578
|||||||||||| | ||||||||||| || ||||||||||||
Sbjct 417 TGTTGGTGCTACCAATTCCTCCAGGTTTATTCCTCTCAAGTGA 459
> Ahg892858 jgi|Araly1|892858|Al_scaffold_0006_854
Length=459
Score = 483 bits (261), Expect = 2e-135
Identities = 397/463 (86%), Gaps = 8/463 (2%)
Strand=Plus/Plus
Query 120 ATGGCTGATGTGGAACCAGAGG-TTGCAGCAGCAGGAGTTCCAAAGAAGAGAACGTTCAA 178
|||||| | || ||| |||||| || || |||| | || | |||||||||||||||||
Sbjct 1 ATGGCTCAAGTCGAATCAGAGGTTTCCA-CAGCTGCTCTTGCGAAGAAGAGAACGTTCAA 59
Query 179 GAAA-TTCGCCTTCAAAGGAGTCGATCTCGATGCTCTTCTCGACATGTCTACCGATGATC 237
||| || ||||||||||||||||||||||||||||||| |||||| | || |||||||
Sbjct 60 -AAAGTTTTCCTTCAAAGGAGTCGATCTCGATGCTCTTCTTGACATGCCCACTGATGATC 118
Query 238 TTGTCAAGCTCTTCTCTTCCCGTATTCGCAGAAGGTTCTCTAGAGGATTGACGAGAAAGC 297
|||||||||||||| || ||||||| | |||||| | ||||||||||||||| ||||
Sbjct 119 TTGTCAAGCTCTTCCCTGCCCGTATAAGAAGAAGGATGAGTAGAGGATTGACGAGGAAGC 178
Query 298 CTATGGCTTTGATTAAGAAACTCCGCAAGGCGAAAAGAGAGGCACCAGCTGGTGAGAAGC 357
|||||||| | || |||||| | ||||| |||||| ||| |||||||||||||||||||
Sbjct 179 CTATGGCTCTCATCAAGAAATTGCGCAAAGCGAAATTAGAAGCACCAGCTGGTGAGAAGC 238
Query 358 CAGAACCAGTGAGAACCCACT-TGAGGAACATGATCATTGTGCCTGAAATGATTGGAAGC 416
||||| ||||||||| || | | ||||||||| | ||| ||||||||||||||||||||
Sbjct 239 CAGAAGTAGTGAGAACACA-TCTAAGGAACATGGTGATTATGCCTGAAATGATTGGAAGC 297
Query 417 ATCATTGGTGTGTACAATGGAAAGACTTTCAACCAAGTGGAGATCAAGCCTGAGATGATT 476
||||| ||||||||||| ||||||||||| |||||| | |||||||||||||||||||||
Sbjct 298 ATCATCGGTGTGTACAACGGAAAGACTTTTAACCAAATCGAGATCAAGCCTGAGATGATT 357
Query 477 GGACATTACCTTGCAGAGTTCTCCATCTCGTACAAGCCAGTTAAGCACGGTAGGCCTGG- 535
|||||||||||||| || ||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 358 GGACATTACCTTGCTGAATTCTCTATCTCGTACAAGCCAGTTAAGCACGGCAGGCCCGGT 417
Query 536 CGTTGGTGCTACCCACTCCTCCAGGTTCATCCCTCTCAAGTGA 578
| |||||||| |||||||| ||||| |||||||||||||||
Sbjct 418 CAA-GGTGCTACACACTCCTCTAGGTTTATCCCTCTCAAGTGA 459
> Ahg497418 jgi|Araly1|497418|fgenesh2_kg.390__2__AT5G43640.1
Length=420
Score = 357 bits (193), Expect = 1e-97
Identities = 264/298 (89%), Gaps = 6/298 (2%)
Strand=Plus/Plus
Query 120 ATGGCTGATGTGGAACCAGAGGTTGCAGCAGCAGGAGTT-CCAAAGAAGAGAACGTTCAA 178
||||| |||||||||||||||||||| || || ||| || ||| ||||||||||||||
Sbjct 1 ATGGCGGATGTGGAACCAGAGGTTGCTGCGGCTGGAATTATGAAA-AAGAGAACGTTCAA 59
Query 179 GAAATTCGCCTTCAAAGGAGTCGATCTCGATGCTCTTCTCGACATGTCTACCGATGATCT 238
||| || | |||| |||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 60 GAAGTTTTCTTTCAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCACCGATGATCT 119
Query 239 TGTCAAGC-TCTTCTCTTCCCGTATTCGCAGAAGGTTCTCTAGAGGATTGACGA-GAAAG 296
|||||||| | ||| | | ||| |||||||||||||||||||||||||||| | ||||
Sbjct 120 TGTCAAGCAT-TTCAGTGCTCGTGTTCGCAGAAGGTTCTCTAGAGGATTGACCAGGAAA- 177
Query 297 CCTATGGCTTTGATTAAGAAACTCCGCAAGGCGAAAAGAGAGGCACCAGCTGGTGAGAAG 356
|||||||||||||| |||||| | ||||| ||||||| ||||||||||||||||||||||
Sbjct 178 CCTATGGCTTTGATCAAGAAATTGCGCAAAGCGAAAATAGAGGCACCAGCTGGTGAGAAG 237
Query 357 CCAGAACCAGTGAGAACCCACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAA 414
|||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CCAGCAGCAGTGAGAACACACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAA 295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43383879546
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5