BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09520.1
Length=565
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487769 jgi|Araly1|487769|fgenesh2_kg.6__903__AT5G09520.1 678 0.0
Ahg487770 jgi|Araly1|487770|fgenesh2_kg.6__904__AT5G09530.1 209 1e-53
> Ahg487769 jgi|Araly1|487769|fgenesh2_kg.6__903__AT5G09520.1
Length=484
Score = 678 bits (367), Expect = 0.0
Identities = 448/487 (92%), Gaps = 6/487 (1%)
Strand=Plus/Plus
Query 1 ATGACATTGAAGAAGAGTT-TCTCTGCTTCTCTACTTTCACCATTTCTGATCATATGTCT 59
||| |||||||||||| || ||||||||||||| |||||||||||||||||||||||| |
Sbjct 1 ATGGCATTGAAGAAGA-TTCTCTCTGCTTCTCTTCTTTCACCATTTCTGATCATATGTAT 59
Query 60 TATTGCATTGCTTTCTGTTCCGGTATCCGTTGGAGCTCGCCGGTTATTGGAGGAACCTAA 119
|||||||||||| |||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 60 TATTGCATTGCTCTCTGTTCCGGTATCAGTTGGAGCTCGCCGGTTATTGGAAGATCCTAA 119
Query 120 ACCAGAGATACCGACATTTCCGGAGCTACCTAAACCAGAGATGCCAAAGTTACCCGAATT 179
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 120 ACCAGAGATACCGACATTGCCGGAGCTACCTAAACTAGAGATGCCAAAGTTACCCGAATT 179
Query 180 TCCGAAG-CTAGAGTTGCCTAAG-TTACCTGAGATTCCAAAACCAGAGATGCCTAAGTTA 237
||||||| || |||||||||||| || || |||||||| || |||||| |||| ||| |
Sbjct 180 TCCGAAGCCT-GAGTTGCCTAAGATT-CCGGAGATTCCCAAGCCAGAGTTGCCAAAGATG 237
Query 238 CCGGAGATTCAGAAGCCTGAATTGCCGACGTTTCCAGAGTTACCGAAGATGCCGGAATTT 297
|||||||||| |||||||||||||||||||||||||||| | ||||| ||||||||||||
Sbjct 238 CCGGAGATTCCGAAGCCTGAATTGCCGACGTTTCCAGAGATGCCGAATATGCCGGAATTT 297
Query 298 CCCAAGTTCGATTTTCCAAAGTTGCCGGAATTGCCAAAACCAGAAGAAACCAAAGTGCCG 357
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 298 CCCAAGTTCGATGCCCCAAAGTTACCGGAATTGCCAAAACCAGAAGAAACCAAAGTGCCG 357
Query 358 GCGTTTACAATGCCAAAGTTTCCTGGATCTCCTTAAGCCCATTACACCAGAAGAAGGCCC 417
|||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||
Sbjct 358 GCGTTTACAATGCCAAAGTTTCCTGGATCTCCATAAGCCCATTATATCAGAAGAAGGCCC 417
Query 418 ATCTACTTTGGAGCCCATTCTAATTTACTGAAATTGTCGTATCACCCCTTGTATTGTTTG 477
| ||||||||||||||| || ||||| |||||||||| ||||||||||||||||| ||||
Sbjct 418 AGCTACTTTGGAGCCCAGTCCAATTTTCTGAAATTGTTGTATCACCCCTTGTATTATTTG 477
Query 478 TCTATTT 484
|||||||
Sbjct 478 TCTATTT 484
> Ahg487770 jgi|Araly1|487770|fgenesh2_kg.6__904__AT5G09530.1
Length=1364
Score = 209 bits (113), Expect = 1e-53
Identities = 215/263 (82%), Gaps = 11/263 (4%)
Strand=Plus/Plus
Query 8 TGAAGAAGAGTTTCTCTGCTTCTCTACT-T--TCACCATTTCTGATCATATGTCTTATTG 64
||||| ||||| |||||||| |||| || | |||||| |||||||||||||||||||||
Sbjct 93 TGAAGCAGAGTCTCTCTGCTGCTCTTCTCTCATCACCACTTCTGATCATATGTCTTATTG 152
Query 65 CATTGCTTTCTGTTCCGGTATCCGTTGGAGCTCGCCGGTTATTGGAGGAACCTAAACCAG 124
||||||| ||| |||||| || || || |||||||||||||||||||| |||||||| |
Sbjct 153 CATTGCTCGCTGATCCGGTTTCAGTCGGTGCTCGCCGGTTATTGGAGGATCCTAAACCGG 212
Query 125 AGATACCGACATTTCCGGAGCTACCTAAAC-CAGA-GATGCCAAAGTTACCCGAATTTCC 182
||||||| | ||| || |||||||||||| | || | | |||| ||| || || || ||
Sbjct 213 AGATACCAAAATTGCCTGAGCTACCTAAATTC-GAAGTTCCCAA-GTTGCCGGAGTTCCC 270
Query 183 GAAGCTAGAGTTGCCTAAGTTACCTGAGATT-CCAAAACCAGAGATGCCTAAGTTACCGG 241
|| | |||||||||||||||||| || ||| ||||| || ||| |||| ||| | ||||
Sbjct 271 TAAACCAGAGTTGCCTAAGTTACCCGA-ATTTCCAAAGCCTGAGTTGCCGAAGATCCCGG 329
Query 242 AGATTC-AGAAGCCTGAATTGCC 263
|||||| | ||||| || |||||
Sbjct 330 AGATTCCA-AAGCCAGAGTTGCC 351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20642173649
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5