BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09530.1
Length=1538
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487770 jgi|Araly1|487770|fgenesh2_kg.6__904__AT5G09530.1 1242 0.0
> Ahg487770 jgi|Araly1|487770|fgenesh2_kg.6__904__AT5G09530.1
Length=1364
Score = 1242 bits (672), Expect = 0.0
Identities = 957/1088 (88%), Gaps = 46/1088 (4%)
Strand=Plus/Plus
Query 1 ATcacaaacacaaagcaacaacaaacaccac--a-aaagcaaaagaagaaacaaacgcaa 57
|||||||||||||| |||||||||||||||| | |||||||||||||||||||| ||||
Sbjct 1 ATCACAAACACAAACCAACAACAAACACCACAAACAAAGCAAAAGAAGAAACAAAAGCAA 60
Query 58 gagttctcaagcaagctcaaacATGGCACTAATGAAGAAGAGTCTCTCTGCTGCTCTTCT 117
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 GAGTTCTCAAGCAAGCTCAGACATGGCACTAATGAAGCAGAGTCTCTCTGCTGCTCTTCT 120
Query 118 CTCATCACCACTTCTGATCATATGTCTTATCGCATTGCTCGCTGATCCGTTTTCAGTCGG 177
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 121 CTCATCACCACTTCTGATCATATGTCTTATTGCATTGCTCGCTGATCCGGTTTCAGTCGG 180
Query 178 TGCTCGCCGGTTATTGGAGGATCCTAAACCGGAGATACCAAAATTGCCTGAGCTACCTAA 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGCTCGCCGGTTATTGGAGGATCCTAAACCGGAGATACCAAAATTGCCTGAGCTACCTAA 240
Query 238 ATTCGAAGTTCCCAAGTTGCCGGAGTTCCCTAAACCAGAGTTGCCCAAGTTACCCGAATT 297
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 241 ATTCGAAGTTCCCAAGTTGCCGGAGTTCCCTAAACCAGAGTTGCCTAAGTTACCCGAATT 300
Query 298 TCCAAAGCCTGAGTTGCCAAAGATCCCGGAGATTCCAAAGCCAGAGTTACCAAAGGTACC 357
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 301 TCCAAAGCCTGAGTTGCCGAAGATCCCGGAGATTCCAAAGCCAGAGTTGCCAAAGGTCCC 360
Query 358 GGAGATTCCAAAGCCTGAGGAAACTAAACTGCCAGATATTCCCAAGCTTGAATTGCCCAA 417
||||||||||||||| |||||| ||||||||||||| ||||| |||| |||||| |||||
Sbjct 361 GGAGATTCCAAAGCCAGAGGAAGCTAAACTGCCAGAGATTCCGAAGCCTGAATTACCCAA 420
Query 418 GTTTCCGGAAATTCCAAAACCTGAGCTCCCAAAGATGCCAGAGATTCCAAAACCTGAGTT 477
|||||| |||||||| |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 421 GTTTCCCGAAATTCCGAAACCTGAGCTCCCAAAGATCCCAGAGATTCCAAAACCAGAGTT 480
Query 478 ACCAAAGGTACCGGAGATTCAGAAGCCCGAGTTACCAAAAATGCCGGAGATTCCAAAGCC 537
||||||||||||||||||||||||||| ||||||||||| | ||||||||||| |||||
Sbjct 481 ACCAAAGGTACCGGAGATTCAGAAGCCGGAGTTACCAAAGGTACCGGAGATTCCGAAGCC 540
Query 538 TGAATTACCAAAGTTTCCAGAGATTCCAAAGCCTGATTTGCCAAAGTTTCCAGAGAATTC 597
|| || || |||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 541 AGAGTTGCCGAAGTTTCCAGAGATTCCAAAGCCTGAATTGCCCAAGTTTCCAGAGAATTC 600
Query 598 AAAGCCTGAGGTGCCTAAGCTAATGGAGACTGAAAAGCCTGAGGCTCCTAAGGTGCCAGA 657
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 601 AAAGCCTGAGGTGCCTAAGCTGATGGAGACTGAAAAGCCTGAGGCTCCTAAGGTTCCGGA 660
Query 658 GATTCCAAAGCCTGAGTTGCCAAAGTTGCCAGAAGTTCCCAAGCTTGAGGCTCCTAAGGT 717
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
Sbjct 661 GATTCCAAAGCCTGAGTTGCCAAAGATGCCGGAAGTTCCCAAGCTTGAGGCTCCTAAGTT 720
Query 718 ACCAGAGAT-CCAGAAGCCGGAGTTGCCCAAAATGCCGGAGTTACCTAAGATGCCGGAGA 776
||| ||||| ||| || || |||||||| ||||| |||||| |||||| | |||||||
Sbjct 721 ACCGGAGATTCCAAAA-CCTGAGTTGCCTAAAATTCCGGAG---CCTAAGGTACCGGAGA 776
Query 777 TTCAGAAACCTGAGTTGCCAAAGTTGCCAGAAGTTCCCAAGCTTGAGGCT-CCTAAGGTA 835
|||||||||| |||||||||||| |||| ||| ||| |||| ||| | || ||| |
Sbjct 777 TTCAGAAACCCGAGTTGCCAAAGATGCCGGAAATTCAGAAGCCGGAGT-TACCAAAGATG 835
Query 836 CCGGAGATCCAGAAGCCGGAGTTGCCCAAAATGCCGGAG-TT--A---CCT-AA--G--A 884
|||||||| |||||||| |||||||| ||| |||| ||| || | ||| || | |
Sbjct 836 CCGGAGATTCAGAAGCCTGAGTTGCCGAAAGTGCCAGAGGTTCCAAAGCCTGAATTGCCA 895
Query 885 T-G---CCGGAGATTCAGAAACCC-GAGTTGC-CC-AAGATGCCGGAGATTC-AGAAGCC 936
| |||||| ||| ||| || ||| || || ||| |||||||| ||| | |||||
Sbjct 896 ACGGTTCCGGAGGTTCC-AAAGCCTGAG--GCTCCTAAGTTGCCGGAGGTTCCA-AAGCC 951
Query 937 TGAGTTGCCGAAGGTGCCAGAGGTTCCA-AAGCCCGAA-TTGCCAACGGTTCCAGAGGTT 994
||| ||||| || ||||| ||| ||| | ||||| ||| || |||| | ||||||| ||
Sbjct 952 TGAATTGCCAAAAGTGCCGGAGATTC-AGAAGCCTGAACTTCCCAA-GATTCCAGAAATT 1009
Query 995 CCAAAGTCTGAGGCTCCTAAGTTTCCAGAGATTCCAAAGCCTGAACTGCCGAAGATTCCA 1054
||||| ||| | | ||| ||||||||||||||||| || || |||||||| ||
Sbjct 1010 CCAAAACCTG---C----A-GTT-CCAGAGATTCCAAAGCCAGAGCTACCGAAGATGCCG 1060
Query 1055 GAAGTTCC 1062
||| ||||
Sbjct 1061 GAACTTCC 1068
Score = 590 bits (319), Expect = 1e-167
Identities = 780/992 (79%), Gaps = 74/992 (7%)
Strand=Plus/Plus
Query 309 AGTTGCCAAAGATCCCGGAGATT-CC-AAAGCCAGAGTTACCAAAGGTACCGGAGA-TTC 365
|||| || ||| | |||||| || || ||| |||||||| || ||| |||| || | |||
Sbjct 247 AGTT-CCCAAGTTGCCGGAG-TTCCCTAAA-CCAGAGTTGCCTAAGTTACCCGA-ATTTC 302
Query 366 CAAAGCCTGAGGAAACTAA-ACTGCCAGATATTCCCAAGCTTGAATTGCCCAAGTTTCCG 424
||||||||||| | || | | || || ||||| |||| || ||||| ||| | |||
Sbjct 303 CAAAGCCTGAGTTGCCGAAGA-TCCCGGAGATTCCAAAGCCAGAGTTGCCAAAGGTCCCG 361
Query 425 GAAATTCCAAAACCTGA-GCTCCCAAAGATGCCAGAGATTCCAAAACCTGAGTTACCAAA 483
|| |||||||| || || | | ||| ||||||||||||| || ||||| ||||| ||
Sbjct 362 GAGATTCCAAAGCCAGAGGAAGCTAAA-CTGCCAGAGATTCCGAAGCCTGAATTACCCAA 420
Query 484 GGTACCGGAGATTCAGAAGCCCGAGTTACCAAAAATGCCGGAGATTCCAAAGCCTGAATT 543
| | || || |||| ||| || ||| | ||||| || || ||||||||||| || || ||
Sbjct 421 GTTTCCCGAAATTCCGAAACCTGAGCTCCCAAAGATCCCAGAGATTCCAAAACCAGAGTT 480
Query 544 ACCAAAGTTTCCAGAGATTCCA-AAGCCTGATTTGCCAAAGTTTCCAGAGAATT-CAAAG 601
||||||| | || |||||| || ||||| || || |||||| | || ||| ||| | |||
Sbjct 481 ACCAAAGGTACCGGAGATT-CAGAAGCCGGAGTTACCAAAGGTACCGGAG-ATTCCGAAG 538
Query 602 CCTGAGGTGCCTAAGCTAATGGAGACTGAAAAGCCTG-A-GGCTCCTAAGGTGCCAGAG- 658
|| ||| |||| ||| | |||| | |||||||| | || || ||| | ||||||
Sbjct 539 CCAGAGTTGCCGAAGTTTCCAGAGATTCCAAAGCCTGAATTGC-CC-AAGTTTCCAGAGA 596
Query 659 ATTCCAAAGCCTGAGTTGCCAAAGTTGCCA-GAAG-TTCCCAAGCTTGAGGCTCCTAAGG 716
||| ||||||||||| |||| ||| || | | || | |||| ||||||||||||||
Sbjct 597 ATT-CAAAGCCTGAGGTGCCTAAGCTG--ATGGAGACTGAAAAGCCTGAGGCTCCTAAGG 653
Query 717 TACCAGAGA-TCCAGAAGCCGGAGTTGCCCAAA-ATGCCGG-AGTTACCTAAG-ATGCCG 772
| || |||| |||| ||||| |||||| ||||| ||||||| |||| || ||| || |
Sbjct 654 TTCCGGAGATTCCA-AAGCCTGAGTTG-CCAAAGATGCCGGAAGTT-CCCAAGCTTG-AG 709
Query 773 GAGATTCAGAAACCTGAG-TTGCCAAAGTTGCCAGAAGTT-CCCAAGCTTGAGGCTCCTA 830
| | || ||| ||| || ||||| || | |||| || || || || ||||
Sbjct 710 GCTCCTAAGTTACCGGAGATT-CCAAA---ACCTG-AGTTGCCTAAAATTCCGGAGCCTA 764
Query 831 AGGTACCGGAGATCCAGAAGCCGGAGTTGCCCAAAATGCCGGAGTTACCTAAGATGCCGG 890
||||||||||||| ||||| | | || ||||| || ||||||||||
Sbjct 765 AGGTACCGGAGATTCAGAA-----A------C------CC-GAGTTGCCAAAGATGCCGG 806
Query 891 AGATTCAGAAACCCGAGTTGCCCAAGATGCCGGAGATTCAGAAGCCTGAGTTGCCGAAGG 950
| |||||||| || ||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 807 AAATTCAGAAGCCGGAGTTACCAAAGATGCCGGAGATTCAGAAGCCTGAGTTGCCGAAAG 866
Query 951 TGCCAGAGGTTCCAAAGCCCGAATTGCCAACGGTTCCAGAGGTTCCAAAGTCTGAGGCTC 1010
||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||
Sbjct 867 TGCCAGAGGTTCCAAAGCCTGAATTGCCAACGGTTCCGGAGGTTCCAAAGCCTGAGGCTC 926
Query 1011 CTAAGTTTCCAGAGATTCCAAAGCCTGAACTGCCGAAGA-TTCCAGAAG-TTCCA-AAAC 1067
||||||| || ||| |||||||||||||| |||| || | | || | || || || || |
Sbjct 927 CTAAGTTGCCGGAGGTTCCAAAGCCTGAATTGCC-AAAAGTGCC-GGAGATT-CAGAAGC 983
Query 1068 CTGAACTGCCCAAGGTTCCAGAAATTACAAAACCTGCAGTTCCAGAGATTCCAAAGCCAG 1127
||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 984 CTGAACTTCCCAAGATTCCAGAAATTCCAAAACCTGCAGTTCCAGAGATTCCAAAGCCAG 1043
Query 1128 AGCTACCGACGATGCCTCAACTTCCCAAGTTGCCGGAATTCCCAAAAGTTCCCGGAACTC 1187
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 AGCTACCGAAGATGCCGGAACTTCCCAAGTTGCCGGAATTCCCAAAAGTTCCCGGAACTC 1103
Query 1188 CTTAAGCG--A---A----GA-GAAGGCCCAGCTACTTTGAAGCCCATCCCACAATCTTA 1237
|||||||| | | || ||||||||| ||||||||||||||||| ||| ||||||
Sbjct 1104 CTTAAGCGTTATTGAACCAGAAGAAGGCCCAACTACTTTGAAGCCCATCACACGATCTTA 1163
Query 1238 AAGTACCGTTTTACCGTTATACCATTTGTCTA 1269
||||||| ||||||| ||| || |||||||||
Sbjct 1164 AAGTACCATTTTACCCTTACACTATTTGTCTA 1195
Score = 215 bits (116), Expect = 9e-55
Identities = 475/637 (75%), Gaps = 70/637 (11%)
Strand=Plus/Plus
Query 255 TGCCGGAG-TTCCCTAAACCAGAGTTGCCCAAGTTACCCGAATTTCC-AAAGCCTGAGTT 312
|||| ||| || || || || || || |||||||| |||||| |||| ||| |||||| |
Sbjct 390 TGCCAGAGATT-CCGAAGCCTGAATTACCCAAGTTTCCCGAAATTCCGAAA-CCTGAGCT 447
Query 313 GCCAAAGATCCCGGAGATTCCAAAGCCAGAGTTACCAAAGGTACCGGAGATTCCA-AAGC 371
||||||||||| ||||||||||| |||||||||||||||||||||||||||| | ||||
Sbjct 448 CCCAAAGATCCCAGAGATTCCAAAACCAGAGTTACCAAAGGTACCGGAGATTC-AGAAGC 506
Query 372 CTGAGGAAACTAAAC-TGCCAGATATTCCCAAGCTTGAATTGCCCAAGTTTCCGGAAATT 430
| ||| | | ||| | || || ||||| |||| || ||||| |||||||| || |||
Sbjct 507 CGGAGTTACC-AAAGGTACCGGAGATTCCGAAGCCAGAGTTGCCGAAGTTTCCAGAGATT 565
Query 431 CCAAAACCTGAGCT-CCCAAAGATGCCAGAGA-TTCCAAAACCTGAGTTACCAAAGGT-A 487
||||| ||||| | ||||| | | ||||||| ||| ||| |||||| | || ||| | |
Sbjct 566 CCAAAGCCTGAATTGCCCAA-GTTTCCAGAGAATTC-AAAGCCTGAGGTGCCTAAGCTGA 623
Query 488 CCGGAGATTCAGAAGCCCGAGT-TACCAAAAATGCCGGAGATTCCAAAGCCTGAATTACC 546
||||| | | ||||| ||| | || || | |||||||||||||||||||| || ||
Sbjct 624 T-GGAGACTGAAAAGCCTGAGGCT-CCTAAGGTTCCGGAGATTCCAAAGCCTGAGTTGCC 681
Query 547 AAAGTTTCCAGA-GATTCCAAAGCCTGATT-TGCCAAAGTTTCCAGAGAATTC-AAAGCC 603
|||| | || || | |||| |||| ||| | || ||||| || |||| ||| ||| ||
Sbjct 682 AAAGATGCCGGAAG-TTCCCAAGCTTGAGGCT-CCTAAGTTACCGGAGA-TTCCAAAACC 738
Query 604 TGAGGTGCCTAAGCTAATGGAGACTGAAAAGCCTGAGGCTCCTAAGGTGCCAGAGATTCC 663
|||| ||||||| ||| | || ||| | | |||||| || |||||||
Sbjct 739 TGAGTTGCCTAA---AAT------T------CCGGAG-C-C-TAAGGTACCGGAGATTCA 780
Query 664 -AAAGCCTGAGTTGCCAAAGTTGCCAGAAGTTCCCAAGCTTGAGGCT-CCTAAGGTACCA 721
||| || |||||||||||| |||| ||| ||| |||| ||| | || ||| | ||
Sbjct 781 GAAACCC-GAGTTGCCAAAGATGCCGGAAATTCAGAAGCCGGAGT-TACCAAAGATGCCG 838
Query 722 GAGATCCAGAAGCCGGAGTTGCCCAAAATGCCGGAG-TTACCTAAGATGCCGGAGATT-C 779
||||| |||||||| |||||||| ||| |||| ||| || || || | ||| || ||| |
Sbjct 839 GAGATTCAGAAGCCTGAGTTGCCGAAAGTGCCAGAGGTT-CC-AA-A-GCCTGA-ATTGC 893
Query 780 AGAAACCTGAGTTGCCAAAGTTGCCAGAAGTTCCCAAGCTTGAGGCTCCTAAGGTACCGG 839
|| | | ||| || | | || ||||| |||| ||||||||||||| | ||||
Sbjct 894 C-AA-C--G-GTT-CC---G--G--AG--GTTCCAAAGCCTGAGGCTCCTAAGTTGCCGG 938
Query 840 AGAT-CCAGAAGCCGGAGTTGCCCAAAA-TGCCGGAG 874
|| | ||| ||||| || ||||| |||| ||||||||
Sbjct 939 AGGTTCCA-AAGCCTGAATTGCC-AAAAGTGCCGGAG 973
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57592450440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5