BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G09540.1 Length=1049 Score E Sequences producing significant alignments: (Bits) Value Ahg487771 jgi|Araly1|487771|fgenesh2_kg.6__905__AT5G09540.1 1096 0.0 Ahg496643 jgi|Araly1|496643|fgenesh2_kg.8__2459__AT5G64360.1 366 2e-100 > Ahg487771 jgi|Araly1|487771|fgenesh2_kg.6__905__AT5G09540.1 Length=863 Score = 1096 bits (593), Expect = 0.0 Identities = 784/871 (90%), Gaps = 34/871 (4%) Strand=Plus/Plus Query 1 ATGGTAAGCGACGGCGGCGGCGAGAATAACAGAGCGGAGGCAGATCAGTTGCTTGCTACA 60 ||||||| | |||||||||||| ||||||||||||||||| ||||||| |||||||||| Sbjct 1 ATGGTAA--G-CGGCGGCGGCGATAATAACAGAGCGGAGGCGGATCAGTGGCTTGCTACA 57 Query 61 TCGGAGAAGCTCTTGGCTTCAAGTGACTTTCATGGAGCAAAGACATTTGCGATCCGTGCA 120 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 58 TCGGAGAAGCTCTTGGCCTCAAGTGACTTTCATGGAGCTAAGACATTTGCGATCCGTGCA 117 Query 121 TGCGAAGCTGACCCATCCCGAACAGACGCAGCTGACTATATCCTCGCCATCGCCGACACT 180 |||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 118 TGCGAAGCTGACCCGTCTCGAACAGACGCAGCGGACTATATCCTCGCCATCGCCGACACT 177 Query 181 CTCCTCGCCGGAGAAACTACAATCGGAGATTCCAAAGTACCAGACTGGTACGCGGTACTT 240 |||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||| Sbjct 178 CTCCTCGCCGGAGAAACTACCATCGGAGATTCGAAAGTAACAGACTGGTACGCGGTACTT 237 Query 241 CGAATCAGCCGCCTAACCC-AAAGCCCTGAACACGTCGCGACTCAGTACCGTAGACTCAC 299 ||| ||||||||||||| | ||| ||| |||||||||||||||||||||||||||||||| Sbjct 238 CGACTCAGCCGCCTAACTCGAAACCCC-GAACACGTCGCGACTCAGTACCGTAGACTCAC 296 Query 300 TCTTCTCCTCAAACTCAATATCAATCGTCTTCCTTTCGCCGATCAAGCGCTTAAACTCGT 359 |||||||||||| |||||| |||||||||||||||||||||||||||||||||| || || Sbjct 297 TCTTCTCCTCAATCTCAATGTCAATCGTCTTCCTTTCGCCGATCAAGCGCTTAAGCTAGT 356 Query 360 CTCCGATGCTTGGT-ATGTCCTCTCTGATCCTCCAAGGAAATCAATTTACGATCGAGAGT 418 |||||||||||||| | ||||||||||||||||||||||||||||| || |||||||||| Sbjct 357 CTCCGATGCTTGGTTA-GTCCTCTCTGATCCTCCAAGGAAATCAATGTATGATCGAGAGT 415 Query 419 TGCAGCTGAGTCAAACTGGTCAATC-----G-----G--A----GA--AATTTCAAGATT 460 | ||||||||||| ||||||| | | | | || |||||||||||| Sbjct 416 TTAAGCTGAGTCAATTTGGTCAACCTTATAGTTATAGCCAATCAGAGCAATTTCAAGATT 475 Query 461 CGCCATTGCAGAGCCAAGCTGAGACCTTGGAGAATCCTACAGCTACAAGCTTTTGGACCG 520 |||||||||||||||||| ||||||| ||||||||||||| ||||| ||||| ||||| | Sbjct 476 CGCCATTGCAGAGCCAAGGTGAGACCATGGAGAATCCTACGGCTACGAGCTTCTGGACTG 535 Query 521 CTTGTCCTTACTGCTTTTCACTTTTTGAGTACCCAAAGGGTTACGAGGAATGCACATTGA 580 |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 536 CTTGTCCTTATTGTTTTTCACTTTTTGAGTACCCAAAGGGTTACGAGGAATGCACATTGA 595 Query 581 GGTGTCAGCAGTGTAGGAAAGCGTTTGAAGCGGTTAAAACGCAAACGCCACCTGTGGAGA 640 |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 596 GGTGTCAGCAATGTAGGAAAGCGTTTGAAGCGGTTAAAACGCAAACGCCACCAGTGGAGA 655 Query 641 GTAATGGTGAAGGCGTTTAC-TTTGGTTCTTGGGCTATGTTCCCTGTAGGATTAACAAGT 699 |||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 656 GTAATGGTGAAGGCGTTTACGTTTG-TTCTTGGGCTATGTTCCCTGTAGGGTTATCAAGT 714 Query 700 CATCCTAACACCTCTAATTGGTCGCCAATCTCACATCTTTCCGTCTGCACAGGGCAAAGT 759 ||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 715 CATGCTAAAACCTCTAATTGGTCGCCAATTTCACATCTTTCCGTCTGCACAGGGCAAAGA 774 Query 760 TCATCTGATCAGCAATCAAA---T-TTGAAGGCTACTCCAAGAAAC-GATGATGTTGACA 814 |||| |||||||||||| || | || | | || | || | ||||||||||||| Sbjct 775 TCATGTGATCAGCAATCGAAGGCTCTTCCACGAAACG--ATGATGCTGATGATGTTGACA 832 Query 815 TATATATTGCAATTTCTGATGATGATTAAAG 845 |||||||| |||||||||||||||||||||| Sbjct 833 TATATATTACAATTTCTGATGATGATTAAAG 863 > Ahg496643 jgi|Araly1|496643|fgenesh2_kg.8__2459__AT5G64360.1 Length=1587 Score = 366 bits (198), Expect = 2e-100 Identities = 356/429 (83%), Gaps = 24/429 (6%) Strand=Plus/Plus Query 27 TAACAGAGCGGAGGCAGATCAGTTGCTTGCTACATCGGAGAAGC-TCTTGGCTTCAAGTG 85 ||||||||||||||| |||| || ||||| |||||||||||||| || | || || |||| Sbjct 82 TAACAGAGCGGAGGCGGATCGGTGGCTTGTTACATCGGAGAAGCTTC-TAGCGTCTAGTG 140 Query 86 ACT-TTCATGGAGCAAAGACATTTGCGATCCGTGCATGCGAAGCTGACCC-ATCCCGAAC 143 | | |||| ||||||||||||||||||||||| ||||||||||||||||| | ||||| | Sbjct 141 A-TCTTCAAGGAGCAAAGACATTTGCGATCCGCGCATGCGAAGCTGACCCGA-CCCGAGC 198 Query 144 AGACGCAGCTGACTATATCCTCGCCATC-GCCGACACTCTCCTCGCCGGAGAAACTACAA 202 ||| ||||| ||||| |||||||| ||| | ||||| ||| ||||||||||| ||| | Sbjct 199 AGAGGCAGCGGACTACATCCTCGCAATCTG-CGACATTCTTCTCGCCGGAGAGACT-C-G 255 Query 203 TC--GGAGATTCCAAAGTACCAGACTGGTACGCGGTACTTCGAATCAGCCGCCTAACCCA 260 || || |||||||| | || ||||||||||| || || ||| || | || || | || Sbjct 256 TCTAGGTGATTCCAACTTGCCGGACTGGTACGCCGTTCTCCGACTCGGTCGTTTAGCACA 315 Query 261 AAGCCCTGAACACGTCGCGACTCAGTACCGTAGACTCACTCTTCTCCTCAAAC-T-CAAT 318 || |||||||||||||||||||||||||||||||||| ||||||||||||| | | | | Sbjct 316 AAACCCTGAACACGTCGCGACTCAGTACCGTAGACTCGCTCTTCTCCTCAATCCTTCCGT 375 Query 319 ATCAATCGTCTTCCTTTCGCCGATCAAGCGCTTAAACTCGTCTCCGATGCTTGGTAT-GT 377 | |||||||| || |||||||||| ||| ||||| |||||||||||||||||| | || Sbjct 376 -T-AATCGTCTCCCATTCGCCGATCGAGCTTTTAAAATCGTCTCCGATGCTTGGT-TCGT 432 Query 378 CCTCTCTGATCC-TCCAAGGAAATCAATT-TACGATCGAGAGTTGCAGCTGAGTCAAACT 435 ||||||||||| |||||| || ||| || ||||| ||||| ||||| ||||||||| || Sbjct 433 TCTCTCTGATCCGTCCAAG-AAGTCA-TTCTACGACCGAGAATTGCAACTGAGTCAA-CT 489 Query 436 -GGTCAATC 443 |||||||| Sbjct 490 CGGTCAATC 498 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39037867008 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5