BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09540.1
Length=1049
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487771 jgi|Araly1|487771|fgenesh2_kg.6__905__AT5G09540.1 1096 0.0
Ahg496643 jgi|Araly1|496643|fgenesh2_kg.8__2459__AT5G64360.1 366 2e-100
> Ahg487771 jgi|Araly1|487771|fgenesh2_kg.6__905__AT5G09540.1
Length=863
Score = 1096 bits (593), Expect = 0.0
Identities = 784/871 (90%), Gaps = 34/871 (4%)
Strand=Plus/Plus
Query 1 ATGGTAAGCGACGGCGGCGGCGAGAATAACAGAGCGGAGGCAGATCAGTTGCTTGCTACA 60
||||||| | |||||||||||| ||||||||||||||||| ||||||| ||||||||||
Sbjct 1 ATGGTAA--G-CGGCGGCGGCGATAATAACAGAGCGGAGGCGGATCAGTGGCTTGCTACA 57
Query 61 TCGGAGAAGCTCTTGGCTTCAAGTGACTTTCATGGAGCAAAGACATTTGCGATCCGTGCA 120
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 58 TCGGAGAAGCTCTTGGCCTCAAGTGACTTTCATGGAGCTAAGACATTTGCGATCCGTGCA 117
Query 121 TGCGAAGCTGACCCATCCCGAACAGACGCAGCTGACTATATCCTCGCCATCGCCGACACT 180
|||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 118 TGCGAAGCTGACCCGTCTCGAACAGACGCAGCGGACTATATCCTCGCCATCGCCGACACT 177
Query 181 CTCCTCGCCGGAGAAACTACAATCGGAGATTCCAAAGTACCAGACTGGTACGCGGTACTT 240
|||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||
Sbjct 178 CTCCTCGCCGGAGAAACTACCATCGGAGATTCGAAAGTAACAGACTGGTACGCGGTACTT 237
Query 241 CGAATCAGCCGCCTAACCC-AAAGCCCTGAACACGTCGCGACTCAGTACCGTAGACTCAC 299
||| ||||||||||||| | ||| ||| ||||||||||||||||||||||||||||||||
Sbjct 238 CGACTCAGCCGCCTAACTCGAAACCCC-GAACACGTCGCGACTCAGTACCGTAGACTCAC 296
Query 300 TCTTCTCCTCAAACTCAATATCAATCGTCTTCCTTTCGCCGATCAAGCGCTTAAACTCGT 359
|||||||||||| |||||| |||||||||||||||||||||||||||||||||| || ||
Sbjct 297 TCTTCTCCTCAATCTCAATGTCAATCGTCTTCCTTTCGCCGATCAAGCGCTTAAGCTAGT 356
Query 360 CTCCGATGCTTGGT-ATGTCCTCTCTGATCCTCCAAGGAAATCAATTTACGATCGAGAGT 418
|||||||||||||| | ||||||||||||||||||||||||||||| || ||||||||||
Sbjct 357 CTCCGATGCTTGGTTA-GTCCTCTCTGATCCTCCAAGGAAATCAATGTATGATCGAGAGT 415
Query 419 TGCAGCTGAGTCAAACTGGTCAATC-----G-----G--A----GA--AATTTCAAGATT 460
| ||||||||||| ||||||| | | | | || ||||||||||||
Sbjct 416 TTAAGCTGAGTCAATTTGGTCAACCTTATAGTTATAGCCAATCAGAGCAATTTCAAGATT 475
Query 461 CGCCATTGCAGAGCCAAGCTGAGACCTTGGAGAATCCTACAGCTACAAGCTTTTGGACCG 520
|||||||||||||||||| ||||||| ||||||||||||| ||||| ||||| ||||| |
Sbjct 476 CGCCATTGCAGAGCCAAGGTGAGACCATGGAGAATCCTACGGCTACGAGCTTCTGGACTG 535
Query 521 CTTGTCCTTACTGCTTTTCACTTTTTGAGTACCCAAAGGGTTACGAGGAATGCACATTGA 580
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CTTGTCCTTATTGTTTTTCACTTTTTGAGTACCCAAAGGGTTACGAGGAATGCACATTGA 595
Query 581 GGTGTCAGCAGTGTAGGAAAGCGTTTGAAGCGGTTAAAACGCAAACGCCACCTGTGGAGA 640
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 596 GGTGTCAGCAATGTAGGAAAGCGTTTGAAGCGGTTAAAACGCAAACGCCACCAGTGGAGA 655
Query 641 GTAATGGTGAAGGCGTTTAC-TTTGGTTCTTGGGCTATGTTCCCTGTAGGATTAACAAGT 699
|||||||||||||||||||| |||| |||||||||||||||||||||||| ||| |||||
Sbjct 656 GTAATGGTGAAGGCGTTTACGTTTG-TTCTTGGGCTATGTTCCCTGTAGGGTTATCAAGT 714
Query 700 CATCCTAACACCTCTAATTGGTCGCCAATCTCACATCTTTCCGTCTGCACAGGGCAAAGT 759
||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 715 CATGCTAAAACCTCTAATTGGTCGCCAATTTCACATCTTTCCGTCTGCACAGGGCAAAGA 774
Query 760 TCATCTGATCAGCAATCAAA---T-TTGAAGGCTACTCCAAGAAAC-GATGATGTTGACA 814
|||| |||||||||||| || | || | | || | || | |||||||||||||
Sbjct 775 TCATGTGATCAGCAATCGAAGGCTCTTCCACGAAACG--ATGATGCTGATGATGTTGACA 832
Query 815 TATATATTGCAATTTCTGATGATGATTAAAG 845
|||||||| ||||||||||||||||||||||
Sbjct 833 TATATATTACAATTTCTGATGATGATTAAAG 863
> Ahg496643 jgi|Araly1|496643|fgenesh2_kg.8__2459__AT5G64360.1
Length=1587
Score = 366 bits (198), Expect = 2e-100
Identities = 356/429 (83%), Gaps = 24/429 (6%)
Strand=Plus/Plus
Query 27 TAACAGAGCGGAGGCAGATCAGTTGCTTGCTACATCGGAGAAGC-TCTTGGCTTCAAGTG 85
||||||||||||||| |||| || ||||| |||||||||||||| || | || || ||||
Sbjct 82 TAACAGAGCGGAGGCGGATCGGTGGCTTGTTACATCGGAGAAGCTTC-TAGCGTCTAGTG 140
Query 86 ACT-TTCATGGAGCAAAGACATTTGCGATCCGTGCATGCGAAGCTGACCC-ATCCCGAAC 143
| | |||| ||||||||||||||||||||||| ||||||||||||||||| | ||||| |
Sbjct 141 A-TCTTCAAGGAGCAAAGACATTTGCGATCCGCGCATGCGAAGCTGACCCGA-CCCGAGC 198
Query 144 AGACGCAGCTGACTATATCCTCGCCATC-GCCGACACTCTCCTCGCCGGAGAAACTACAA 202
||| ||||| ||||| |||||||| ||| | ||||| ||| ||||||||||| ||| |
Sbjct 199 AGAGGCAGCGGACTACATCCTCGCAATCTG-CGACATTCTTCTCGCCGGAGAGACT-C-G 255
Query 203 TC--GGAGATTCCAAAGTACCAGACTGGTACGCGGTACTTCGAATCAGCCGCCTAACCCA 260
|| || |||||||| | || ||||||||||| || || ||| || | || || | ||
Sbjct 256 TCTAGGTGATTCCAACTTGCCGGACTGGTACGCCGTTCTCCGACTCGGTCGTTTAGCACA 315
Query 261 AAGCCCTGAACACGTCGCGACTCAGTACCGTAGACTCACTCTTCTCCTCAAAC-T-CAAT 318
|| |||||||||||||||||||||||||||||||||| ||||||||||||| | | | |
Sbjct 316 AAACCCTGAACACGTCGCGACTCAGTACCGTAGACTCGCTCTTCTCCTCAATCCTTCCGT 375
Query 319 ATCAATCGTCTTCCTTTCGCCGATCAAGCGCTTAAACTCGTCTCCGATGCTTGGTAT-GT 377
| |||||||| || |||||||||| ||| ||||| |||||||||||||||||| | ||
Sbjct 376 -T-AATCGTCTCCCATTCGCCGATCGAGCTTTTAAAATCGTCTCCGATGCTTGGT-TCGT 432
Query 378 CCTCTCTGATCC-TCCAAGGAAATCAATT-TACGATCGAGAGTTGCAGCTGAGTCAAACT 435
||||||||||| |||||| || ||| || ||||| ||||| ||||| ||||||||| ||
Sbjct 433 TCTCTCTGATCCGTCCAAG-AAGTCA-TTCTACGACCGAGAATTGCAACTGAGTCAA-CT 489
Query 436 -GGTCAATC 443
||||||||
Sbjct 490 CGGTCAATC 498
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39037867008
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5