BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09560.1
Length=1839
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325507 jgi|Araly1|325507|fgenesh1_pm.C_scaffold_6000727 608 4e-173
Ahg918231 jgi|Araly1|918231|Al_scaffold_0008_2982 165 1e-39
> Ahg325507 jgi|Araly1|325507|fgenesh1_pm.C_scaffold_6000727
Length=1578
Score = 608 bits (329), Expect = 4e-173
Identities = 426/472 (90%), Gaps = 10/472 (2%)
Strand=Plus/Plus
Query 990 AAGTGTGACAGATG-CTTCTATAA-GTGTGGG-AGATAGA-CATCCTGACTGTGATGAAC 1045
||||| ||||| || ||| ||||| | |||| || || | | || |||||||||||||
Sbjct 903 AAGTGAGACAGGTGCCTT-TATAACCT-TGGGAAG-TA-ATCGTCTTGACTGTGATGAAG 958
Query 1046 GCTTAGTTACAATTACAGCATTTGAGAAAACC-AAAGACATAACCTCCGAATCCCAGAGA 1104
||||| |||||||||| |||| ||| | || || | || || |||| ||||||||||
Sbjct 959 GCTTATTTACAATTACTGCATCAGAG-GACCCTAATGCCAAAAACTCCCCATCCCAGAGA 1017
Query 1105 GCTTTAGTTCTTGTTTTCTCTAACATGTATGAGAATGCCACTGCAAAAGTCCTAGATAGT 1164
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||
Sbjct 1018 GCTTTAGTTCTTGTTTTCTCTAAAATGTATGAGAATACCACTGCAAAAGTCCTAGACAGT 1077
Query 1165 GGCTTAACGTCATCTATCACTGCACGGCTTGTGGTCCGGTCAAATCAGATTAATTGTTTG 1224
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1078 GGCTTAACGTCATCTATCACTGCACGGCTTGTGGTCCGCTCAAATCAGATTAATTGTTTG 1137
Query 1225 CTGGGAGAAGAGGGTCGTATAAAAACTACAATTCAGCAAAGAACTGGTGCTTTTATAACT 1284
||||||||||||| | ||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1138 ATGGGAGAAGAGGGGCATATAAAATCTACAATACAGCAAAGAACTGGTGCTTTTATAACT 1197
Query 1285 GTATTGAACGTTGAGCAGAACCCAAAATGTGTTTCAGAGAACAATCAAGTTGTGCAGATT 1344
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1198 GTATTGAACGTTGAGCAGAACCCAAAATGTGTTTCAGAGAACAATCAAATTGTGCAGATT 1257
Query 1345 TCAGGAGAGTTCCCAAATGTGAGAGAAGCTATAAACCAAGTTACCAGCATGCTACGAGAG 1404
||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1258 TCAGGAGCGTTCCCAAATGTGAAAGAAGCTATAAACCAAGTTACCAGTATGCTACGAGAG 1317
Query 1405 GATCTTATCAACCAATCGTTCCAAAGGGGGTCTCAATATGCAGTTAACTATT 1456
||||||||||||||||| ||||||| ||||||||| | | ||||||||||||
Sbjct 1318 GATCTTATCAACCAATCCTTCCAAATGGGGTCTCATTTTCCAGTTAACTATT 1369
Score = 455 bits (246), Expect = 6e-127
Identities = 475/580 (82%), Gaps = 37/580 (6%)
Strand=Plus/Plus
Query 84 ATACGTAAC-GTTTCGCATTCTCTGCAACGTGTCTCAGGCCGGGC-ATGTGATCGGGAAA 141
|||||| || ||||||||||||| || |||||||||||| |||| |||||||||| |||
Sbjct 66 ATACGT-ACTGTTTCGCATTCTCGGCCACGTGTCTCAGG-TGGGCGATGTGATCGGAAAA 123
Query 142 CATGGAGGAATGGTTAAGAAGCTTCATA-AATCAACAGAA-T-CCAGTATCTGGGTCGAG 198
||||| || || ||| | ||||| | | ||||||| ||| | ||| ||||||||||||
Sbjct 124 GATGGAAGAGTGATTAGGCAGCTT-AAAGAATCAAC-GAATTCCCA-AATCTGGGTCGAG 180
Query 199 AAGACTCCTCTTGATGATTCTCCGTACCGTATCATCAAGATTTTCGGTCATGTAGGTTCA 258
||| |||||| | |||||||| ||||||| |||||| ||| ||| | ||||||| ||
Sbjct 181 AAGGCTCCTC-T--TGATTCTCTGTACCGTGTCATCACGATAATCGCTGATGTAGGCTC- 236
Query 259 G-TGTCTAGGGTGAAATTAGGTGTTATTGTTAATAACGTTAGCAACAGGGAGAA-GA--A 314
| ||||||||| ||||||||||||||||||||||| | |||||||||| |||| || |
Sbjct 237 GACGTCTAGGGTAAAATTAGGTGTTATTGTTAATAATGCTAGCAACAGGAAGAAGGAGGA 296
Query 315 GGAGCAAGAACAAGAAGTTGAAGTCTCCAGAGCACAAT-ACGCGTTGATTAGGGTTTTCG 373
|| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 297 GGTGCAAGAACAAGAAGTTGAAGTCTCCAGAGCACAAGGA-GCGTTGATTAGGGTTTTCG 355
Query 374 AAGCTCTAAATTTCGGAGATT-GC-ACTAGTAGTACCGTCTCCTGTAATCTGTTGATGGA 431
||||||||||| || ||||| | ||||||||||||||||| | || ||||| |||||
Sbjct 356 AAGCTCTAAATGTC--AGATTTGGGACTAGTAGTACCGTCTCGTCTAGGCTGTTAATGGA 413
Query 432 AGGGAGCCATGTGGTTACTGTGATAGGTAAGA-ATGGTGAATTGATGCAGAGGATATTGG 490
|| |||||||||||||||| ||||||||| | |||||||||||| ||| |||| ||
Sbjct 414 AGCTTGCCATGTGGTTACTGTCATAGGTAAGGGA-GGTGAATTGATGGAGATGATAA-GG 471
Query 491 AAG-AAACTGGTTGTAATGTTCAACTACGTTCAC-ATGATTTGTCAATTTGCACAAACCC 548
||| ||||||||||||||||| || || | || || |||| ||| |||| || | ||
Sbjct 472 AAGGAAACTGGTTGTAATGTTGAAATATGC-CAATATAATTTACCAAGTTGCGCAGATCC 530
Query 549 TGGTGACGT-AGTGCTCAAGATCGAAGGAAATAGACTTTCTGCAGTGATGAAGGCACTAG 607
|| |||||| | || | ||||| |||||||| | ||| |||||||| ||| | ||||
Sbjct 531 TGATGACGTGA-TGGTGAAGATAGAAGGAAAC-GT-TTT-TGCAGTGAAGAAAGTTCTAG 586
Query 608 TATCCATATCCAGTCG-CTTGCAGGCTTGTCCGCCGATTT 646
|||||||||||||||| || ||| ||||||| | ||||||
Sbjct 587 TATCCATATCCAGTCGTCT-GCAAGCTTGTCAGTCGATTT 625
> Ahg918231 jgi|Araly1|918231|Al_scaffold_0008_2982
Length=2598
Score = 165 bits (89), Expect = 1e-39
Identities = 315/421 (75%), Gaps = 28/421 (7%)
Strand=Plus/Plus
Query 997 ACAGATG-CTTCTATAAGTGTGGGAGATAGACATCCTGACTGTGATGAACG-CTTAGTTA 1054
|||| || |||| |||| ||||||| ||| || | |||| ||||| ||||| || | ||
Sbjct 1465 ACAGGTGCCTTC-ATAAATGTGGGAAATACACTTGCTGATTGTGAAGAACGTCTGA-TTG 1522
Query 1055 CAATTACAGCATTTGAGAAAACC--AAAGACATAACCTCCG-AATCCCAGAGAGCT-TTA 1110
|| | || ||| ||| || || || | || || || || | |||||| |||| |||
Sbjct 1523 CAGTAACTGCACCAGAG-AACCCTGAATGTCA-AAGCT-CGCCAGCCCAGAAAGCTATTA 1579
Query 1111 GTTCTTGTTTTCTCTAACA-TGTATGAGAATGCCACTGCAAAAGTCCTAGATAGTGGCTT 1169
| ||| |||| ||| | | | | |||| | ||||| |||| ||||||||| ||||
Sbjct 1580 -TGCTTCTTTTTTCT-AGATTATTTGAGCTTTCCACTAAAAAAATCCTAGATAATGGCCC 1637
Query 1170 AACGTCATCTATCACTGCACGGCTTGTGGTCCGGTCAAATCAGATTAATTGTTTGCT-GG 1228
|| | |||||||||||||||||||||| |||| ||| ||||||| |||| |||| ||
Sbjct 1638 AAGGACATCTATCACTGCACGGCTTGTTGTCCCAACAAGTCAGATTGGTTGTGTGCTGGG 1697
Query 1229 GAGAA-GAGGGTCG-TATAAAAACTA-CAATTCAGCAAAGAACTGGTGCTTTTA-T-AAC 1283
|| || || ||| | ||| | | ||| | | ||| ||||| || | | | ||
Sbjct 1698 GA-AAGGA-GGT-GTTATTGTTTC-AGAAATGCGGAAAACCACTGGGGCCTCAATTCAAA 1753
Query 1284 TGTATTGAACGTTGAGCAGAACCCAAAATGTGTTTCAGAGAACAATCAAGTTGTGCAGAT 1343
| | ||||| |||||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 1754 T-T-TTGAAGGTTGAGCAGAACCCAAAATGTGTTTCAGAGAATGATCAAGTTATCCAGAT 1811
Query 1344 TTCAGGAGAGTTCCCAAATGTGAGAGAAGCTATAAACCA-AGTTACCAGCATGCTACGAG 1402
| ||||||||||||| |||||||||||||| || ||| | |||| |||| ||| ||||
Sbjct 1812 TACAGGAGAGTTCCCTAATGTGAGAGAAGCCATTTTCCATA-TTACAAGCAGGCTGCGAG 1870
Query 1403 A 1403
|
Sbjct 1871 A 1871
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69057614185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5