BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G09570.1

Length=695
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg940419 jgi|Araly1|940419|scaffold_600963.1                        436    8e-122


> Ahg940419 jgi|Araly1|940419|scaffold_600963.1
Length=406

 Score =  436 bits (236),  Expect = 8e-122
 Identities = 323/362 (89%), Gaps = 17/362 (5%)
 Strand=Plus/Plus

Query  152  CGTGCTCCTCCTCCAGCAACAGCTCAGCCTAGTAGCGGTGGTTCTTTCTTAGGCAATATT  211
            ||||||||||||||||||||||||||||||||| ||||||| | | | ||| | ||||||
Sbjct  50   CGTGCTCCTCCTCCAGCAACAGCTCAGCCTAGTGGCGGTGG-TATCT-TTA-GAAATATT  106

Query  212  GGTGCATCCATAACTGAAGGTCTGGCTTGGGGTACTGGAACTGCA-TTTGGACACAGGGT  270
             | |  ||||||  ||| ||| | ||||   || |||||| |||| |||  |||||||||
Sbjct  107  CG-G--TCCATAGTTGATGGTTTTGCTTTTAGTGCTGGAAATGCAGTTT-CACACAGGGT  162

Query  271  TGTGGATTCTGTGATGGGTCCACGAACCTTTAAGCACGAAACCGTTGTTTCTCAGG-T--  327
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  
Sbjct  163  TGTGGATTCTGTGATGGGTCCACGAACCTTTAAGCACGAAACCGTTGTTTCTCAGGCTGA  222

Query  328  ---T-C--CATCTGCTGCAAATACCATGACTGCTTGTGACATTCACTCCAAGGCTTTCCA  381
               | |  |  ||| ||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct  223  CCCTGCTTCCCCTGTTGCAACTAGCATGAGTGCTTGTGACATTCACTCCAAGGCTTTCCA  282

Query  382  AGATTGCGTCAACCATTTTGGAAGCGACATCAGTAAGTGCCAGTTCTACATGGACATGCT  441
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  283  AGATTGCGTCAACCATTTTGGAAGCGACATCAGTAAGTGCCAGTTCTACATGGACATGCT  342

Query  442  GAGTGAATGCAAGAAGAATTCTGGTTCCGTGGTGGCTGCTTAATCAACTAGTCGAGATGT  501
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  343  GAGTGAATGCAAGAAGAATTCTGGTTCCGTGGTGGCTGCTTAATCAACTAGTCGAGATGT  402

Query  502  CT  503
            ||
Sbjct  403  CT  404


 Score = 75.0 bits (40),  Expect = 7e-13
 Identities = 42/43 (98%), Gaps = 0/43 (0%)
 Strand=Plus/Plus

Query  44  CTTCAACATCTGAAATTCAAAATGCCTCGAGGAAGCTCCGGAG  86
           |||||||||||||||||||||||||||||||| ||||||||||
Sbjct  2   CTTCAACATCTGAAATTCAAAATGCCTCGAGGTAGCTCCGGAG  44



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25542354390


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5