BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09580.1
Length=1520
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325508 jgi|Araly1|325508|fgenesh1_pm.C_scaffold_6000728 1718 0.0
Ahg352198 jgi|Araly1|352198|fgenesh1_pg.C_scaffold_6002791 448 8e-125
Ahg942977 jgi|Araly1|942977|scaffold_603521.1 276 4e-73
Ahg942976 jgi|Araly1|942976|scaffold_603520.1 276 4e-73
Ahg924187 jgi|Araly1|924187|scaffold_105468.1 193 4e-48
> Ahg325508 jgi|Araly1|325508|fgenesh1_pm.C_scaffold_6000728
Length=1101
Score = 1718 bits (930), Expect = 0.0
Identities = 1045/1102 (95%), Gaps = 2/1102 (0%)
Strand=Plus/Plus
Query 82 ATGATTTTCCGGCGATTCTCCGGGAGATTTCTAACTGCGATCCCCGACTCTTGTAAACTT 141
||||||||||||||||||||||||||| |||| | ||||| |||||||||||||| ||
Sbjct 1 ATGATTTTCCGGCGATTCTCCGGGAGAATTCTGCCGGCGATTTCCGACTCTTGTAAAATT 60
Query 142 AAATTCGAAGCTAAACGGAGTTTCCGATCTGATGCGGCGCTCGAAGCCATAGCTAATGCA 201
|||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||
Sbjct 61 CAATTCGAAGCTAAACGGAGTTTACGATCTGATGCGGCGCTCGAAGCCATAACCAATGCG 120
Query 202 TTAGAAGAGAAAGTACCAAACTTAGTGTTATACAATTATCCTTCCTTCTCCGGCGCTTTT 261
||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||
Sbjct 121 TTAGAAGAGAAAGTACCAAACCTAGTGCTATACAATTATCCCTCCTTCTCCGGCGCTTTC 180
Query 262 TCAGCTCTCTTCGCTCATCTCTACCACTATCGACTCCGTCTTCCTTGTCTCATCTTACCC 321
|||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||
Sbjct 181 TCAGCTCTCTTCGCTCATCTCTACCACTCTCGCCTCCGTCTTCCTTGTCTTATCTTACCC 240
Query 322 TTTTCTTCCCTCATACCCTTTAGGGTTGAAGATTTGTGTTTGGAGGGGTTTGAGAGGTGT 381
||||||||| |||||||||| ||| ||||||||||||||||||||||||| ||||| |||
Sbjct 241 TTTTCTTCCGTCATACCCTTCAGGATTGAAGATTTGTGTTTGGAGGGGTTCGAGAGATGT 300
Query 382 TACCTTCTCGATTTTGTTGTTCCAAAAGATTTTGCTTGCCAGAAAACAGCTTGCGAGATC 441
|| || || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 TATCTACTTGATTTTGTTGTTCCCAAAGATTTTGCTTGCCAGAAAACAGCTTGCGAGATC 360
Query 442 GTTTGCTTTGATCATCGGAACTCCGCATTGAAAAGGATTGGCTTAATAAAGGAAGAGCAC 501
| ||||||||||| |||||||| ||||||| ||||||||||| ||||||||||||||||
Sbjct 361 ATATGCTTTGATCACCGGAACTCGGCATTGACAAGGATTGGCTCAATAAAGGAAGAGCAC 420
Query 502 AAGAAGAGGCTTAAGATTTA-TGTTGATACTGAAACTAGTAGCTCAAAGGCTGTGTATAA 560
|||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 421 AAGAAGAGGCTTAAGA-TTATTGTTGATACTGAAACGAGTAGCTCAAAGGCTGTGTATAA 479
Query 561 ATATTTCTCTAGTAAACTCACAGATCAAAGATCTTCTGAGGTAGAAGCTCTCAGTTTGCT 620
||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 480 ATATTTCTCCAGTAAACTCACAGATAAAACATCTTCTGAGGTAGAAGCTCTCAGTTTGCT 539
Query 621 AAGTGTAGAAGACAAAACTCGGGTTGAATCGGTTCTTGATTACATTGAGGATATCGATCT 680
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AAGTGTAGAAGACAAAAGTCGGGTTGAATCGGTTCTTGATTACATTGAGGATATCGATCT 599
Query 681 TCGGCGATGGATGTTACCAGATATCAAAGCTTTCAGCTTTGGTCTTAAGGATTGGCGCTC 740
||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 600 TCGACGATGGATGTTACCAGATATCAAAGCTTTCAGCTTTGGCCTTAAAGATTGGCGCTC 659
Query 741 AAGGATCAATTGTATCATCAATCCTTACATGTACGAACAGTTGTTGAAAATAAGTTCAGC 800
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 660 AAGGATCAATTGTATCACCAATCCTTACATGTACGAACAGTTGTTGAAAATAAGTTCGGC 719
Query 801 GGATCTCATTGCGTATGGGAATTCGTATTTTTCATCTCGTCTTATTGATGCAAAGAAACT 860
|||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 720 GGATCTCATTGCTTATGGGAATTCATATTTTTCATCTCGTCTTCTTGATGCAAAGAAACT 779
Query 861 GCTAAAGCTGAATAAAGCTTTCAAGATTAGATTGGGAAGAGGGTTATATGGAGAGTGCCT 920
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 780 GCTAAAGCTGAATAAAGCTTTCAAGATCAGATTGGGAAGAGGGTTATATGGAGAGTGCCT 839
Query 921 GGGAATGCGCGCAGATGGTAACCATCAACTAAGCGATGAACTTGGCAAGCTTCTTAGTCT 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GGGAATGCGCGCAGATGGTAACCATCAACTAAGCGATGAACTTGGCAAGCTTCTTAGTCT 899
Query 981 ACAAAGTTCTGCAGCTGGTCTGAGGCCTATAGGAGCTGTTACATTTGTGCAAAGGAATAA 1040
||||||||||||||||||||| ||||| ||||||||| |||||||| |||||||||||||
Sbjct 900 ACAAAGTTCTGCAGCTGGTCTCAGGCCAATAGGAGCTATTACATTTATGCAAAGGAATAA 959
Query 1041 TCTCAAAATGTGCTTGAGAAGTACCGATGCTATAACCAATACATCCGAAGTTGCTAAGGC 1100
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 960 TCTCAAAATGTGCTTGAGAAGTACCGATGCTATAACCGATACATCCGAAGTTGCTAAGGC 1019
Query 1101 TTATGGAGGAGGTGGAACGTCTAGTTCAAGCTCGTTTATCATAAGAATGGATGAATATAA 1160
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TTATGGAGGAGGTGGAACATCTAGTTCAAGCTCGTTTATCATAAGAATGGATGAATATAA 1079
Query 1161 TCAATGGATTTCGAAGCTTTGA 1182
|||||||||||||| |||||||
Sbjct 1080 TCAATGGATTTCGACGCTTTGA 1101
> Ahg352198 jgi|Araly1|352198|fgenesh1_pg.C_scaffold_6002791
Length=702
Score = 448 bits (242), Expect = 8e-125
Identities = 290/313 (93%), Gaps = 4/313 (1%)
Strand=Plus/Plus
Query 470 TGAAAAGGATTGGCTTAATAAAGGAAGAGCACAAGAAGAGGCTTAAGATTTATGTTGATA 529
||| ||||||| ||| |||||||||| | || ||||||||||||||||||||||||||||
Sbjct 119 TGACAAGGATTTGCTCAATAAAGGAACAACAAAAGAAGAGGCTTAAGATTTATGTTGATA 178
Query 530 CTGAAACTAGTAGCTCAAAGGCTGTGTATAAATATTTCTCTAGTAAACTCACAGATCAAA 589
||| ||| ||||||||||||||||||||||| |||||||| |||||||||| ||||||||
Sbjct 179 CTGGAACCAGTAGCTCAAAGGCTGTGTATAAGTATTTCTCCAGTAAACTCATAGATCAAA 238
Query 590 GATCTTCTGAGGTAGAAGCTCTCAGTTTGCTAAGTGTAGAAGACAAAACTCGGGTTGAAT 649
||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 239 GATCTTCCGAGGTAAAAGCTCTCAGTATGCTAAGTGTAGAAGACAAAACTCGGGTTGAAT 298
Query 650 CGGTTCTTGATTACATTGAGGATATCGATCTTCGGCGAT-GGATGTTACCAGATATCAAA 708
|||||||||||||||||||||||||||||||||| || | ||||||||||| ||||||||
Sbjct 299 CGGTTCTTGATTACATTGAGGATATCGATCTTCGACG-TCGGATGTTACCATATATCAAA 357
Query 709 GCTTTCAGCTTTGGTCTTAAGGATTGGCGCTCAAGGATCAATTGTATCA-TCAATCCTTA 767
||||||||||||||||||||||||||||||| ||||||||||||||| | | ||||||||
Sbjct 358 GCTTTCAGCTTTGGTCTTAAGGATTGGCGCTTAAGGATCAATTGTATTACT-AATCCTTA 416
Query 768 CATGTACGAACAG 780
|||||| ||||||
Sbjct 417 CATGTATGAACAG 429
Score = 335 bits (181), Expect = 6e-91
Identities = 225/245 (92%), Gaps = 8/245 (3%)
Strand=Plus/Plus
Query 854 AGAAACTGCTAAAGCTGAATAAAGCTTTCAAGATTAGATTGGGAAGAGGGTTATATGGAG 913
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 428 AGAAACTGCTAAAGCTGAATAAAGCTTTCAAGATCAGATTAGGAAGAGGGTTATATGGAG 487
Query 914 AGTGCCTGGGAATGCGCGCAGATGGTAACCATCAACTAAGCGATGAACTTGGCAAGCTTC 973
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 488 GGTGCCTGGGAATGCGCGCAGATGGTAACCATCAACTAAGCGATG-----G-CAAGCTTC 541
Query 974 TTAGTCTACAAAGTTCTGCAGCTGGTCTGAGGCCTATAGGAG-CTGTTACATTTGTGCAA 1032
|||||||||||||||||||||||||||| ||||| |||| || || ||| |||| |||||
Sbjct 542 TTAGTCTACAAAGTTCTGCAGCTGGTCTCAGGCCAATAG-AGGCTATTATATTTATGCAA 600
Query 1033 AGGAATAATCTCAAAATGTGCTTGAGAAGTACCGATGCTATAACCAATACATCCGAAGTT 1092
||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||| ||
Sbjct 601 AGGAATAATCTCAAAATGTGCTTTAGAAGTACCGATGCTATAACCGACACATCCGAAATT 660
Query 1093 GCTAA 1097
|||||
Sbjct 661 GCTAA 665
> Ahg942977 jgi|Araly1|942977|scaffold_603521.1
Length=348
Score = 276 bits (149), Expect = 4e-73
Identities = 173/184 (94%), Gaps = 4/184 (2%)
Strand=Plus/Plus
Query 599 AGGTAGAAGCTCTCAGTTTGCTAAGTGTAGAAGACAAAACTCGGGTTGAATCGGTTCTTG 658
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 AGGTAAAAGCTCTCAGTATGCTAAGTGTAGAAGACAAAACTCGGGTTGAATCGGTTCTTG 65
Query 659 ATTACATTGAGGATATCGATCTTCGGCGAT-GGATGTTACCAGATATCAAAGCTTTCAGC 717
||||||||||||||||||||||||| || | ||||||||||| |||||||||||||||||
Sbjct 66 ATTACATTGAGGATATCGATCTTCGACG-TCGGATGTTACCATATATCAAAGCTTTCAGC 124
Query 718 TTTGGTCTTAAGGATTGGCGCTCAAGGATCAATTGTATCA-TCAATCCTTACATGTACGA 776
|||||||||||||||||||||| ||||||||||||||| | | |||||||||||||| ||
Sbjct 125 TTTGGTCTTAAGGATTGGCGCTTAAGGATCAATTGTATTACT-AATCCTTACATGTATGA 183
Query 777 ACAG 780
||||
Sbjct 184 ACAG 187
Score = 106 bits (57), Expect = 5e-22
Identities = 74/81 (91%), Gaps = 6/81 (7%)
Strand=Plus/Plus
Query 921 GGGAATGCGCGCAGATGGTAACCATCAACTAAGCGATGAACTTGGCAAGCTTCTTAGTCT 980
||||||||||||| |||||||||||||||||||||||| | |||||||||||||||
Sbjct 187 GGGAATGCGCGCAAATGGTAACCATCAACTAAGCGATG-----G-CAAGCTTCTTAGTCT 240
Query 981 ACAAAGTTCTGCAGCTGGTCT 1001
|||||||||||||||||||||
Sbjct 241 ACAAAGTTCTGCAGCTGGTCT 261
> Ahg942976 jgi|Araly1|942976|scaffold_603520.1
Length=356
Score = 276 bits (149), Expect = 4e-73
Identities = 173/184 (94%), Gaps = 4/184 (2%)
Strand=Plus/Plus
Query 599 AGGTAGAAGCTCTCAGTTTGCTAAGTGTAGAAGACAAAACTCGGGTTGAATCGGTTCTTG 658
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 AGGTAAAAGCTCTCAGTATGCTAAGTGTAGAAGACAAAACTCGGGTTGAATCGGTTCTTG 65
Query 659 ATTACATTGAGGATATCGATCTTCGGCGAT-GGATGTTACCAGATATCAAAGCTTTCAGC 717
||||||||||||||||||||||||| || | ||||||||||| |||||||||||||||||
Sbjct 66 ATTACATTGAGGATATCGATCTTCGACG-TCGGATGTTACCATATATCAAAGCTTTCAGC 124
Query 718 TTTGGTCTTAAGGATTGGCGCTCAAGGATCAATTGTATCA-TCAATCCTTACATGTACGA 776
|||||||||||||||||||||| ||||||||||||||| | | |||||||||||||| ||
Sbjct 125 TTTGGTCTTAAGGATTGGCGCTTAAGGATCAATTGTATTACT-AATCCTTACATGTATGA 183
Query 777 ACAG 780
||||
Sbjct 184 ACAG 187
Score = 215 bits (116), Expect = 9e-55
Identities = 141/152 (93%), Gaps = 6/152 (4%)
Strand=Plus/Plus
Query 854 AGAAACTGCTAAAGCTGAATAAAGCTTTCAAGATTAGATTGGGAAGAGGGTTATATGGAG 913
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 186 AGAAACTGCTAAAGCTGAATAAAGCTTTCAAGATCAGATTAGGAAGAGGGTTATATGGAG 245
Query 914 AGTGCCTGGGAATGCGCGCAGATGGTAACCATCAACTAAGCGATGAACTTGGCAAGCTTC 973
||||||||||||||||||| |||||||||||||||||||||||| | ||||||||
Sbjct 246 GGTGCCTGGGAATGCGCGCAAATGGTAACCATCAACTAAGCGATG-----G-CAAGCTTC 299
Query 974 TTAGTCTACAAAGTTCTGCAGCTGGTCTGAGG 1005
|||||||||||||||||||||||||||| |||
Sbjct 300 TTAGTCTACAAAGTTCTGCAGCTGGTCTCAGG 331
> Ahg924187 jgi|Araly1|924187|scaffold_105468.1
Length=250
Score = 193 bits (104), Expect = 4e-48
Identities = 146/165 (88%), Gaps = 7/165 (4%)
Strand=Plus/Plus
Query 619 CTAAGTGTAGAAGACAAAACTCGGGTTGAATCGGTTCTTGATTACATTGAGGATATCGAT 678
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 CTAAGTGTAGAAGACAAAAC-ATGGTTGAATCGGTTCTTGATTACATTGAGGATATCGAT 59
Query 679 CTTCGGCGAT-GGATGTTACCAGATATCAAAGCTTTCAGCTTTGGTCTTAAGGATTGGCG 737
||||| || | |||||||||||||||||||||||| |||||||| ||||||||| ||||
Sbjct 60 CTTCGACG-TCGGATGTTACCAGATATCAAAGCTTCCAGCTTTGCTCTTAAGGACTGGC- 117
Query 738 CTC-AAGGATCAATTGTATCA-TCAATCCTTACATGTACGAACAG 780
|| ||||||||||| ||| | | ||||| ||||| || ||||||
Sbjct 118 CTTTAAGGATCAATTATATTACT-AATCCGTACATTTATGAACAG 161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56906826030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5