BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09590.1
Length=2464
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487773 jgi|Araly1|487773|fgenesh2_kg.6__907__AT5G09590.1 3646 0.0
> Ahg487773 jgi|Araly1|487773|fgenesh2_kg.6__907__AT5G09590.1
Length=2406
Score = 3646 bits (1974), Expect = 0.0
Identities = 2185/2288 (95%), Gaps = 10/2288 (0%)
Strand=Plus/Plus
Query 159 TTGAATTTCGAAACCATGGCTACCGCAGCTCTCCTCCGCTCTATTCGACGCCGTGAAGTC 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 TTGAATTTCGAAACCATGGCTACCGCAGCTCTCCTCCGCTCTATTCGACGCCGTGAAGTC 182
Query 219 GTTTCCTCTCCTTTCTCAGCTTACAGATGCCTTTCAAGCAGTGGGAAAGCATCATTGAAC 278
|||||| |||||||||||||||||||||||||||| ||||| |||||| |||||||||||
Sbjct 183 GTTTCCGCTCCTTTCTCAGCTTACAGATGCCTTTCGAGCAGCGGGAAAACATCATTGAAC 242
Query 279 AGTTCCTATCTGGGTCAGAATTTTAGAAGCTTTTCCAGAGCCTTTAGCTCGAAGCCTGCT 338
||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 243 AGTTCGTATCTCGGTCAGAATTTGAGAAGCTTTTCCAGAGCATTTAGCTCGAAGCCTGCT 302
Query 339 GGAAACGATGTCATTGGTATTGATTTGGGTACTACTAATTCATGTGTTGCCGTCATGGAG 398
|| || ||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 303 GGGAATGATGTCATTGGTATTGATTTGGGTACTACTAATTCCTGTGTTGCGGTCATGGAG 362
Query 399 GGGAAGAATCCGAAAGTCATTGAAAATGCTGAAGGTGCTCGAACCACTCCATCAGTTGTA 458
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 GGAAAGAATCCGAAAGTCATTGAAAATGCTGAAGGTGCTCGAACCACTCCATCAGTTGTA 422
Query 459 GCATTCAACACGAAAGGAGAACTTCTTGTGGGTACACCAGCCAAGCGACAAGCTGTCACT 518
|| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 GCGTTCAACTCAAAAGGAGAACTTCTTGTGGGTACACCAGCCAAGCGACAAGCTGTCACT 482
Query 519 AATCCTACAAACACAGTATCTGGAACGAAACGTTTGATTGGGAGAAAGTTCGACGATCCA 578
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 483 AATCCTACAAACACAGTATCTGGAACCAAACGTTTGATTGGGAGAAAGTTCGACGATCCA 542
Query 579 CAAACTCAGAAAGAAATGAAGATGGTGCCTTACAAGATTGTGCGTGCACCTAATGGCGAT 638
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 CAAACACAGAAAGAAATGAAGATGGTGCCTTACAAGATTGTGCGTGCACCTAATGGCGAT 602
Query 639 GCGTGGGTTGAAGCCAATGGTCAGCAGTATTCTCCTAGTCAGATTGGAGCGTTTATCTTG 698
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 603 GCTTGGGTTGAAGCCAATGGTCAGCAGTATTCTCCTAGTCAGATTGGAGCGTTTATTTTG 662
Query 699 ACGAAGATGAAAGAGACGGCCGAAGCTTACCTTGGAAAATCTGTCACGAAAGCTGTTGTC 758
|| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 663 ACTAAGATGAAAGAGACAGCCGAAGCTTACCTTGGAAAATCTGTCACCAAAGCTGTTGTC 722
Query 759 ACTGTTCCAGCTTACTTTAATGATGCTCAGAGACAAGCAACAAAAGATGCTGGTAGAATT 818
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 723 ACTGTTCCAGCTTACTTTAATGATGCTCAGAGGCAAGCAACAAAGGATGCTGGTAGAATT 782
Query 819 GCTGGTCTTGATGTTGAGAGAATCATAAATGAACCGACGGCTGCTGCTCTGTCCTATGGA 878
|||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 783 GCTGGTCTTGATGTCGAGAGAATCATAAATGAGCCGACTGCTGCTGCTCTTTCCTATGGA 842
Query 879 ATGACCAACAAGGAGGGGTTGATTGCTGTGTTTGATCTTGGTGGTGGGACATTTGATGTA 938
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 ATGACCAATAAGGAGGGTTTGATTGCTGTGTTTGATCTTGGTGGTGGGACATTTGATGTA 902
Query 939 TCTGTTTTGGAGATTTCTAATGGGGTATTCGAGGTGAAAGCCACCAATGGTGATACCTTC 998
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 903 TCTGTTTTGGAGATTTCTAATGGGGTATTCGAGGTCAAAGCCACCAATGGTGATACCTTC 962
Query 999 TTGGGAGGTGAGGATTTCGACAATGCTCTGCTAGACTTCTTGGTTAATGAGTTCAAGACC 1058
|||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 963 TTGGGAGGAGAGGATTTCGATAATGCTCTGCTAGACTTCTTGGTAAAGGAGTTCAAGACC 1022
Query 1059 ACTGAGGGAATAGACCT-AGCCAAAGACAGACTTGCTCTGCAGAGGCTTAGAGAAGCCGC 1117
|||||||| ||||| || | ||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1023 ACTGAGGGGATAGATCTCA-CCAAAGACAGACTTGCTCTGCAGAGGCTTCGAGAAGCAGC 1081
Query 1118 TGAGAAAGCGAAGATTGAACTGTCATCTACTTCTCAAACTGAAATTAATCTCCCATTTAT 1177
||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1082 TGAGAAAGCGAAGATCGAACTATCATCTACTTCTCAAACAGAAATTAATCTCCCATTTAT 1141
Query 1178 CACAGCCGATGCATCTGGAGCAAAGCATTTCAACATCACCCTAACAAGGTCAAGGTTTGA 1237
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1142 CACAGCTGATGCATCTGGAGCAAAGCATTTCAACATCACCCTAACAAGGTCTAGGTTTGA 1201
Query 1238 AACTCTTGTGAATCACTTGATTGAGAGGACCCGCGATCCTTGCAAGAACTGTCTCAAGGA 1297
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 GACTCTGGTGAATCACTTGATTGAGAGGACCCGCGATCCTTGCAAGAACTGTCTCAAGGA 1261
Query 1298 TGCTGGTATAAGTGCTAAGGAAGTTGATGAGGTTCTTCTAGTTGGAGGAATGACGCGTGT 1357
||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1262 TGCTGGTATTAGTGCCAAGGAAGTTGATGAGGTTCTTCTAGTTGGAGGAATGACTCGTGT 1321
Query 1358 CCCCAAGGTTCAGTCTATTGTTGCGGAGATCTTTGGAAAGAGTCCAAGCAAAGGTGTCAA 1417
||||||||| || ||| |||| || |||||||||||||||||||||||||||||||||||
Sbjct 1322 CCCCAAGGTACAATCTGTTGTCGCAGAGATCTTTGGAAAGAGTCCAAGCAAAGGTGTCAA 1381
Query 1418 TCCTGATGAGGCTGTTGCTATGGGAGCTGCACTTCAAGGTGGTATCCTCCGCGGTGATGT 1477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 TCCTGATGAGGCTGTTGCTATGGGAGCTGCACTTCAAGGTGGTATCCTCCGCGGTGATGT 1441
Query 1478 CAAAGAATTGTTGCTTCTGGATGTCACACCTCTATCGCTCGGTATTGAAACACTTGGTGG 1537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 TAAAGAATTGTTGCTTCTGGATGTCACACCTCTATCGCTCGGTATTGAAACACTTGGTGG 1501
Query 1538 TGTCTTTACGAGACTGATCACCCGAAATACAACCATCCCCACAAAGAAGAGTCAGGTGTT 1597
||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1502 TGTCTTTACAAGACTGATTACCCGAAACACAACCATCCCCACAAAGAAGAGTCAGGTGTT 1561
Query 1598 CTCAACTGCAGCCGATAATCAGACTCAAGTTGGGATCAGGGTGCTTCAAGGTGAGCGTGA 1657
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1562 CTCAACTGCAGCCGATAATCAGACTCAAGTTGGGATCAGGGTACTTCAAGGGGAGCGTGA 1621
Query 1658 AATGGCAACAGACAACAAGCTCTTGGGAGAATTTGATCTAGTTGGCATTCCACCATCTCC 1717
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1622 AATGGCATCAGACAACAAGCTCTTGGGAGAATTTGATCTAGTTGGCATTCCACCATCTCC 1681
Query 1718 AAGAGGAGTCCCTCAGATCGAAGTGACATTTGACATTGATGCCAATGGCATTGTCACTGT 1777
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1682 AAGAGGAATCCCTCAGATCGAAGTGACATTTGACATTGATGCCAATGGCATTGTCACTGT 1741
Query 1778 TTCCGCCAAGGACAAGACGACTGGTAAAGTACAACAGATCACAATCCGATCCTCTGGTGG 1837
|||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||
Sbjct 1742 TTCCGCCAAGGACAAGACGACTGGGAAAGAACAACAGATCACAATCCGATCCTCCGGTGG 1801
Query 1838 GCTCTCAGAGGATGATATCCAGAAGATGGTGAGAGAAGCAGAGTTGCATGCTCAGAAAGA 1897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1802 GCTCTCAGAGGATGATATCCAGAAGATGGTGAGAGAAGCAGAGTTGCATGCTCAGAAAGA 1861
Query 1898 CAAAGAAAGAAAAGAATTGATCGACACCAAGAACACAGCTGACACAACAATTTACAGCAT 1957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1862 CAAAGAAAGAAAAGAATTGATCGACACCAAGAACACAGCTGACACAACAATTTACAGCAT 1921
Query 1958 AGAGAAGAGTCTTGGTGAATACAGAGAGAAGATCCCAAGTGAAATCGCCAAGGAGATTGA 2017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1922 AGAGAAGAGTCTTGGTGAATACAGAGAGAAGATCCCAAGTGAAATCGCCAAGGAGATAGA 1981
Query 2018 AGATGCTGTGGCAGATCTAAGGAGCGCTTCCTCTGGGGATGATCTCAACGAGATCAAGGC 2077
|||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1982 AGATGCTGTGGCGGATCTAAGGAGCGCTTCGTCTGGGGATGATCTCAATGAGATCAAGGC 2041
Query 2078 CAAGATTGAGGCGGCAAACAAAGCTGTTTCTAAGATTGGGGAGCACATGTCTGGTGGTTC 2137
|||||| || || |||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2042 CAAGATCGATGCTGCAAACAAAGCTGTTTCTAAGATTGGAGAGCACATGTCAGGTGGTTC 2101
Query 2138 TGGTGGAGGCTCTGCACCAGGAGGAGGA---TCTGAGGGAGGCAGTGATCAAGCTCCAGA 2194
|||||||||||||||||||||||||||| ||| ||||||||||||| ||||||| |||
Sbjct 2102 TGGTGGAGGCTCTGCACCAGGAGGAGGAGGATCTCAGGGAGGCAGTGAACAAGCTCAAGA 2161
Query 2195 AGCAGAGTACGAGGAAGTGAAAAAGTGAGGAGATTTGGTAAATTCTTGCCACTTGGGTTT 2254
|||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 2162 GGCAGAGTATGAGGAAGTGAAAAAGTGAAGAGATTTCGTAAATTCTTGCCACTTGGGTTT 2221
Query 2255 TAAGAGATTAGGTTTAGATCATGGTGGGTTCTATGTCCAAGGAACTTTTGCCTTTTAGAA 2314
|||||||||||||| |||||||||||||||||||| ||||| ||||||||||||| ||||
Sbjct 2222 TAAGAGATTAGGTT-AGATCATGGTGGGTTCTATGCCCAAGAAACTTTTGCCTTT-AGAA 2279
Query 2315 CAACGAGCAGTGGATATGTTTCTGGAATAAGCTTTTGTCAGGGAACTAAACTTAATGTTT 2374
| | |||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2280 GAGCCAGCAATGGATCTGTTTCTGGAATAAGCTTTTGTCAGGGAACTGAACTTAATGTTT 2339
Query 2375 CTCTGCTAAAAAACCTTTGTTATGTAATGTGA--TGGTTAAAGAGAAGAAGTTTTCAAAA 2432
|||||||||||| ||||||||||||||||||| ||||||| |||||||||||| ||| |
Sbjct 2340 CTCTGCTAAAAA-CCTTTGTTATGTAATGTGAGATGGTTAAGGAGAAGAAGTTTACAAGA 2398
Query 2433 TTTTGTCA 2440
||||||||
Sbjct 2399 TTTTGTCA 2406
Score = 204 bits (110), Expect = 3e-51
Identities = 125/132 (95%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 2 CGTCGTCGATGTCGAGAATTATCACCATCTAGAATCTTCCCTCAACCTCTAGAAAACAAC 61
||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 CGTCGTCGACGTCGAGAAGTATCACCATCTAGAACCTTCCCTCAACCTCTAGAAAACAAC 60
Query 62 TTTCGTATCCTTCAAAAACCCTAAACCCTAGCTTTTGCACAGACGCAATTTCATCGCATC 121
||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 TTTCGTA-CCTTCAAAACCCCTAAACCCTAACTTTTGCACAGACGCAATTTCATCGCATC 119
Query 122 ATTTTGCAATTT 133
|||||| |||||
Sbjct 120 ATTTTG-AATTT 130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92864017310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5