BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09600.1
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487775 jgi|Araly1|487775|fgenesh2_kg.6__909__AT4G32210.1 1371 0.0
> Ahg487775 jgi|Araly1|487775|fgenesh2_kg.6__909__AT4G32210.1
Length=978
Score = 1371 bits (742), Expect = 0.0
Identities = 889/957 (93%), Gaps = 22/957 (2%)
Strand=Plus/Plus
Query 50 GCAGAGAATTCTCATCTGATTCAGTCCATGGCTGCCACGGCTCTTTTCCGATCGATTCGC 109
|||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 39 GCAG-GAAGACTCATCTGATTCAGTCCATGGCTGCCACAGCTCTTTTCCGATCGATTCGC 97
Query 110 CGACGCGACGTCGTCTCCGCGCCTCTTTCCGTTTACAAATCCCTTGCTGGTAATGCTCAA 169
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 98 CGACGCGACGTCGTGTCTGCGCCTCTTTCCGTTTACAAATCTCTTGCTGGTAATGCTCAA 157
Query 170 CCTTCCTGGGGTAGTTCATACATTGGTCAGAACTATGCAAGTTTCTCCAGAGCTTTCGGG 229
||||| |||||||||||||||| |||||| |||||||||||||| | ||||||||||||
Sbjct 158 CCTTCATGGGGTAGTTCATACACTGGTCAAAACTATGCAAGTTTGTGTAGAGCTTTCGGG 217
Query 230 TCAAAACCTGTTGTGAATGACATTCTTGGTACTGGTTTGGGCACTAACAATGCCATTaga 289
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 218 TCAAAACCTGTTGTGAATGACATTCTTGGTACTGGTTTGGGCACTAATAACGCCATTAGA 277
Query 290 gaggagagagagaAGTCAAAATCTACTGAAG-CTGCAATTGTTGGTGCTCAATTGACTCG 348
| |||||||||| |||||||| ||| || || |||||| |||||| ||||||||||||||
Sbjct 278 GTGGAGAGAGAGCAGTCAAAAGCTAATG-AGACTGCAACTGTTGGAGCTCAATTGACTCG 336
Query 349 ATCTTTCCGTGCTCTTGATGTGGGAACATCGAAACGATTGTTTTCTACAATCTCAGGGGA 408
|||||||||| ||||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct 337 ATCTTTCCGTACTCTTGATGAGGCAACATCGAAACGATTGTTCTCTACAATCTCAGGGGA 396
Query 409 TATAAAGACAACACAGGAGGAACCAAAAATCAAAAGCTTTCGCCCTTTATCTCCTCACCT 468
||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 397 TATAAAGACAACACATGAGGAACCAAAAATCAAAAGCTTTCGCCCCTTGTCTCCTCACCT 456
Query 469 TTCTGTTTACCAGCCTCAGATGAACTCCATGCTATCGATTTTCAACAGAATCTCAGGGGT 528
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 457 TACTGTTTACCAGCCTCAGATGAACTCCATGCTATCGATTTTCAATAGAATCTCAGGGGT 516
Query 529 TTACTTGACCGGTGTCACTTTCGCTGGCTACCTTCTCTACCTGAAGATGGGTATGATCTG 588
||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 517 CTACTTGACCGGAGTCACTTTCGCCGGCTACCTTCTCTACCTGAAAATGGGTATGATTTG 576
Query 589 CCTCACCTACCCGAGTTTCTACCAAGTCCTTTACCATACACAACAGCAACTTCCAGTCAT 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 CCTCACCTACCCGAGTTTCTACCAAGTCCTTTACCATACACAACAGCAACTTCCAGTCAT 636
Query 649 CACCTCGGTTACTGCATTAGCCGCTATTTATCATACTATCAAGAGTACTCACTCACTCTT 708
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 637 CACCTCGGTTACTGCATTAGCCGCAATTTACCATACTATCAAGAGTACTCACTCACTCTT 696
Query 709 GACCCATTAAAAACCTTTACCAAAGCTCTTTCGATGAAGCCGCCAAAGTCTCCAGTAAGA 768
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 697 GACCCATTAAAAACCTTTCCCAAAGCTCTTTCGATGAAGCCGCCAAAGTCTCCAGTAAGA 756
Query 769 GTTTCTTTGAGATGATTAATAAGGAGACAAGAAAACATTTGTTAAACTCTGTCTTGAAAA 828
|||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||
Sbjct 757 GTTTCTTTGAGATGATTAATAAGGAGGCAAGAAA-CATTTGTCAAACTCTGTCTTGAAAA 815
Query 829 GGTAAAGATTTAGCACCTGTTTCTTTGGATTCGAGGCTTTTTTGGGGGTATGTTTGTTGC 888
| |||||||||| ||||||||| ||||||||||||||| |||||||||||
Sbjct 816 GCTAAAGATTTAACACCTGTTT-TTTGGATTCGAGGCT-----------ATGTTTGTTGC 863
Query 889 TTTTCTTTGTTCTCAGACCTTTTTTGAATGATGTAATAAATGTTTACCAAAGTTCTGTTG 948
|||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 864 TTTTCTTTGTTCCCAGACCTTTTT-GAATGATGTAATAAATGTTTACCAATGTTCTGTTG 922
Query 949 CTACGTTACTCTTTTTGCTACAAGTTTT----CTTCATGAAATTTGTCAACTTCAAT 1001
||||||||||||||| || |||| |||| ||||||||||||||||||||| |||
Sbjct 923 CTACGTTACTCTTTT-GCAACAACTTTTTTTTCTTCATGAAATTTGTCAACTTTAAT 978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38504146170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5