BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G09610.1 Length=1554 Score E Sequences producing significant alignments: (Bits) Value Ahg940424 jgi|Araly1|940424|scaffold_600968.1 708 0.0 > Ahg940424 jgi|Araly1|940424|scaffold_600968.1 Length=1193 Score = 708 bits (383), Expect = 0.0 Identities = 456/492 (93%), Gaps = 2/492 (0%) Strand=Plus/Plus Query 1062 CAGAGGCATATACAGAGACCTAATCTTTGAGTGCGTCGCAAACAACGCAGATTGGTTATC 1121 |||||||| |||||||||||||||||| ||||||||||| || ||||| || |||||| | Sbjct 681 CAGAGGCAAATACAGAGACCTAATCTTCGAGTGCGTCGCCAAGAACGCCGAATGGTTAGC 740 Query 1122 TTTTGACCCCTATGGAACACACGTTGTGCAGAACATTCTGATACTTCAGAATCCGGTTGC 1181 |||||||||||| |||||||||||||| |||||| |||||| ||||||||| || ||||| Sbjct 741 TTTTGACCCCTACGGAACACACGTTGTACAGAACTTTCTGACACTTCAGAACCCCGTTGC 800 Query 1182 AACAACCGCAATCGCTGAGAGACTTCGTGGAAGTTTCTTCAGGTTAGCGATGGAGAGACA 1241 ||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||| Sbjct 801 AACAACCGCAATCGCCGAGAGACTTCGTGGAAATTTCTTCAGTTTAGCGATGGAGAGACA 860 Query 1242 AGGAAGCTATGTGGTGGAGAAGTGTTTAAAATCGGATTTTGCGAGAGACCAAGTGTTGGA 1301 ||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||| Sbjct 861 AGGAAGCTATGTGGTGGAGAAGTGTTTGAAATCGGATTTTGCTAGAGGGAAAGTGTTGGA 920 Query 1302 GGAGTTTAGAGGGAATGCCAAAGAATGGGTAAGAATGACAACTGATAAGTTTGGCAACTT 1361 |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 921 GGAGTTTAGAGGAAATGATAAAGAATGGGTAAGAATGACAACTGATAAGTTTGGCAACTT 980 Query 1362 TGTGGTACAGTCTGCGTTGAGAGTGATGAAGGAGAAAGAGATGAGACCACTGTTGAGAGA 1421 ||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 981 TGTGGTACAATGTGCGTTGAGAGTGATGAAGGAGAAAGAGATGAGACCAATGTTGAGAGA 1040 Query 1422 GTTTGTGGAGAAGCTAAGGCCTCACTT-TGGGAAGATGGAGATTGGGCGTGGGAGGAACA 1480 ||||||||||||||||||||||||||| ||| | |||||||||||||| ||||||||||| Sbjct 1041 GTTTGTGGAGAAGCTAAGGCCTCACTTCTGG-AGGATGGAGATTGGGCATGGGAGGAACA 1099 Query 1481 CACTGCGAGTGATTCAAGAAGAAATTGTTGGTTGGATTAATCAGTTACCAGATAAATCTG 1540 ||||| || | ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1100 CACTGAGACTAATTCAAGAAGAAATTGTGGGTTGGATTAATCAGTTACCAGATAAATCTG 1159 Query 1541 GATATGTGAACT 1552 ||||| |||||| Sbjct 1160 GATATATGAACT 1171 Score = 699 bits (378), Expect = 0.0 Identities = 509/571 (89%), Gaps = 14/571 (2%) Strand=Plus/Plus Query 450 CAACAACAACTACCCCAATCTCAACGTTTATAACGTTGGTCATATCTCCGCCGCTAGCTT 509 ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 123 CAACAACAACTACCCCAATCTCAACGTTTATAACGTTAGTCATATCTCCACCGCTAGCTT 182 Query 510 CAACGCTCCTCC-G-TT-CACTCCGTCGTCGTTGACCCAACCAGATGATTCTTCCTCCAG 566 |||||||| ||| | || | | | | | | | ||||| | || |||||||||||| Sbjct 183 CAACGCTCATCCGGCTTGGA-T--GAC-CCAAT--CTCAACCTGGTGCTTCTTCCTCCAG 236 Query 567 ATATTCCGGCAAACCCTTCCCTCCTCCTCCTCTGAGTTTCGTGAGCCCTGGCGTCGACAA 626 ||| |||||| ||||||||||||||||| | | ||||| |||||||| |||||||| || Sbjct 237 ATACTCCGGCCAACCCTTCCCTCCTCCT-C-C-AAGTTTTGTGAGCCCCGGCGTCGAAAA 293 Query 627 GGATCGTAACTGGCTATCAAGTCTGTTGGACATGATGACGTGTGCACAACGTTTCACTGA 686 ||||| ||||| ||||||||| ||||||||||||||||| |||||| ||||||| |||| Sbjct 294 GGATCATAACTTGCTATCAAGACTGTTGGACATGATGACTTGTGCAGGACGTTTCGCTGA 353 Query 687 GTTCCAAAAGTACCTCCAAGATCTCGATACCTATCCAACGGCTGAGAGGGAGAGCCATCT 746 ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 354 GTTCCAAAAGTTCCTCCAAGATCTCGATACCAATCCAACGGCTGAGAGGGAGAGCCATCT 413 Query 747 GTTCAAGATCGGATCAGCGTTAACCACAACCAAACGCATTTTCCTCCACTTGGCTACGAA 806 |||||||||||||||| ||||||||||| ||| |||| ||||||||||||||||||||| Sbjct 414 GTTCAAGATCGGATCATTGTTAACCACAAACAAGCGCACTTTCCTCCACTTGGCTACGAA 473 Query 807 CCAATACGGCTCACAAGCTTTACGTATCCTCTTTAGACGCAGCCCTAGCTTAGACCATCT 866 |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct 474 CCAATACGGCTCACAATCTTTACATATCCTCTTTAGACGCAGCCCTAGCTTAGACCATCT 533 Query 867 CTTATTCTGCGCCGTCGACACAAACTTCTTCTTGCTCATGAGCGATAAGTATGGTCGTGG 926 ||||||| ||| || | || |||||||||||||||||||| ||||||||| | ||| || Sbjct 534 CTTATTCCACGCTGTTGGCATAAACTTCTTCTTGCTCATGACCGATAAGTACGCTCGAGG 593 Query 927 CTTGATCATCCCCGCTATACGAGCCGTCGATAAAACCAAGAAGGAG-TCTCTCTACAAGC 985 ||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 594 CTTGATCATATCCGCTATACGAGCCGTCGATAAAACCAAGAAGGAGGT-TCTCTACAAGC 652 Query 986 TCACTTACGAATACACTCTGCACCTTGCCAG 1016 |||| ||||||||||||||||| |||||||| Sbjct 653 TCACGTACGAATACACTCTGCAACTTGCCAG 683 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58201894360 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5