BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09610.1
Length=1554
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940424 jgi|Araly1|940424|scaffold_600968.1 708 0.0
> Ahg940424 jgi|Araly1|940424|scaffold_600968.1
Length=1193
Score = 708 bits (383), Expect = 0.0
Identities = 456/492 (93%), Gaps = 2/492 (0%)
Strand=Plus/Plus
Query 1062 CAGAGGCATATACAGAGACCTAATCTTTGAGTGCGTCGCAAACAACGCAGATTGGTTATC 1121
|||||||| |||||||||||||||||| ||||||||||| || ||||| || |||||| |
Sbjct 681 CAGAGGCAAATACAGAGACCTAATCTTCGAGTGCGTCGCCAAGAACGCCGAATGGTTAGC 740
Query 1122 TTTTGACCCCTATGGAACACACGTTGTGCAGAACATTCTGATACTTCAGAATCCGGTTGC 1181
|||||||||||| |||||||||||||| |||||| |||||| ||||||||| || |||||
Sbjct 741 TTTTGACCCCTACGGAACACACGTTGTACAGAACTTTCTGACACTTCAGAACCCCGTTGC 800
Query 1182 AACAACCGCAATCGCTGAGAGACTTCGTGGAAGTTTCTTCAGGTTAGCGATGGAGAGACA 1241
||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 801 AACAACCGCAATCGCCGAGAGACTTCGTGGAAATTTCTTCAGTTTAGCGATGGAGAGACA 860
Query 1242 AGGAAGCTATGTGGTGGAGAAGTGTTTAAAATCGGATTTTGCGAGAGACCAAGTGTTGGA 1301
||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||
Sbjct 861 AGGAAGCTATGTGGTGGAGAAGTGTTTGAAATCGGATTTTGCTAGAGGGAAAGTGTTGGA 920
Query 1302 GGAGTTTAGAGGGAATGCCAAAGAATGGGTAAGAATGACAACTGATAAGTTTGGCAACTT 1361
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 921 GGAGTTTAGAGGAAATGATAAAGAATGGGTAAGAATGACAACTGATAAGTTTGGCAACTT 980
Query 1362 TGTGGTACAGTCTGCGTTGAGAGTGATGAAGGAGAAAGAGATGAGACCACTGTTGAGAGA 1421
||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 981 TGTGGTACAATGTGCGTTGAGAGTGATGAAGGAGAAAGAGATGAGACCAATGTTGAGAGA 1040
Query 1422 GTTTGTGGAGAAGCTAAGGCCTCACTT-TGGGAAGATGGAGATTGGGCGTGGGAGGAACA 1480
||||||||||||||||||||||||||| ||| | |||||||||||||| |||||||||||
Sbjct 1041 GTTTGTGGAGAAGCTAAGGCCTCACTTCTGG-AGGATGGAGATTGGGCATGGGAGGAACA 1099
Query 1481 CACTGCGAGTGATTCAAGAAGAAATTGTTGGTTGGATTAATCAGTTACCAGATAAATCTG 1540
||||| || | ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1100 CACTGAGACTAATTCAAGAAGAAATTGTGGGTTGGATTAATCAGTTACCAGATAAATCTG 1159
Query 1541 GATATGTGAACT 1552
||||| ||||||
Sbjct 1160 GATATATGAACT 1171
Score = 699 bits (378), Expect = 0.0
Identities = 509/571 (89%), Gaps = 14/571 (2%)
Strand=Plus/Plus
Query 450 CAACAACAACTACCCCAATCTCAACGTTTATAACGTTGGTCATATCTCCGCCGCTAGCTT 509
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 123 CAACAACAACTACCCCAATCTCAACGTTTATAACGTTAGTCATATCTCCACCGCTAGCTT 182
Query 510 CAACGCTCCTCC-G-TT-CACTCCGTCGTCGTTGACCCAACCAGATGATTCTTCCTCCAG 566
|||||||| ||| | || | | | | | | | ||||| | || ||||||||||||
Sbjct 183 CAACGCTCATCCGGCTTGGA-T--GAC-CCAAT--CTCAACCTGGTGCTTCTTCCTCCAG 236
Query 567 ATATTCCGGCAAACCCTTCCCTCCTCCTCCTCTGAGTTTCGTGAGCCCTGGCGTCGACAA 626
||| |||||| ||||||||||||||||| | | ||||| |||||||| |||||||| ||
Sbjct 237 ATACTCCGGCCAACCCTTCCCTCCTCCT-C-C-AAGTTTTGTGAGCCCCGGCGTCGAAAA 293
Query 627 GGATCGTAACTGGCTATCAAGTCTGTTGGACATGATGACGTGTGCACAACGTTTCACTGA 686
||||| ||||| ||||||||| ||||||||||||||||| |||||| ||||||| ||||
Sbjct 294 GGATCATAACTTGCTATCAAGACTGTTGGACATGATGACTTGTGCAGGACGTTTCGCTGA 353
Query 687 GTTCCAAAAGTACCTCCAAGATCTCGATACCTATCCAACGGCTGAGAGGGAGAGCCATCT 746
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 354 GTTCCAAAAGTTCCTCCAAGATCTCGATACCAATCCAACGGCTGAGAGGGAGAGCCATCT 413
Query 747 GTTCAAGATCGGATCAGCGTTAACCACAACCAAACGCATTTTCCTCCACTTGGCTACGAA 806
|||||||||||||||| ||||||||||| ||| |||| |||||||||||||||||||||
Sbjct 414 GTTCAAGATCGGATCATTGTTAACCACAAACAAGCGCACTTTCCTCCACTTGGCTACGAA 473
Query 807 CCAATACGGCTCACAAGCTTTACGTATCCTCTTTAGACGCAGCCCTAGCTTAGACCATCT 866
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 474 CCAATACGGCTCACAATCTTTACATATCCTCTTTAGACGCAGCCCTAGCTTAGACCATCT 533
Query 867 CTTATTCTGCGCCGTCGACACAAACTTCTTCTTGCTCATGAGCGATAAGTATGGTCGTGG 926
||||||| ||| || | || |||||||||||||||||||| ||||||||| | ||| ||
Sbjct 534 CTTATTCCACGCTGTTGGCATAAACTTCTTCTTGCTCATGACCGATAAGTACGCTCGAGG 593
Query 927 CTTGATCATCCCCGCTATACGAGCCGTCGATAAAACCAAGAAGGAG-TCTCTCTACAAGC 985
||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 594 CTTGATCATATCCGCTATACGAGCCGTCGATAAAACCAAGAAGGAGGT-TCTCTACAAGC 652
Query 986 TCACTTACGAATACACTCTGCACCTTGCCAG 1016
|||| ||||||||||||||||| ||||||||
Sbjct 653 TCACGTACGAATACACTCTGCAACTTGCCAG 683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58201894360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5