BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09620.1
Length=1987
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487778 jgi|Araly1|487778|fgenesh2_kg.6__912__AT5G09620.1 2313 0.0
> Ahg487778 jgi|Araly1|487778|fgenesh2_kg.6__912__AT5G09620.1
Length=1820
Score = 2313 bits (1252), Expect = 0.0
Identities = 1641/1815 (90%), Gaps = 82/1815 (5%)
Strand=Plus/Plus
Query 32 TTCATGGATTGAGCAAAGAAGAGGACGATAATTTCGAAAATATCGCGATACAATGGACAA 91
||||||||||||||||||||||||| |||||| || |||||||||| | | |||||||||
Sbjct 1 TTCATGGATTGAGCAAAGAAGAGGAAGATAATATCCAAAATATCGCCAAAAAATGGACAA 60
Query 92 GTTCTCGTACAATTCGTATCCAGATTCAGCTGAATCGTCGCCAAGATCTCGCGATGTCGA 151
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 ATTCTCGTACAACTCGTATCCAGATTCAGCTGAATCTTCGCCAAGATCTCGCGATGTCGA 120
Query 152 ATTTGAAAATCCGTCGCCATGGGAGGACCAGCAGCAGCAGAACTACAAGGTGAAGCTCAT 211
|||||||||||| |||||||||||||||| |||||||||| |||||| |||||||||||
Sbjct 121 GTTTGAAAATCCGCCGCCATGGGAGGACCACCAGCAGCAGAGCTACAAAGTGAAGCTCAT 180
Query 212 GTGCAGCTATGGCGGCAAGATCCAGCCTCGTCCACACGATAACCAGCTTACTTATGTAAA 271
|||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 181 GTGCAGTTATGGCGGCAAGATCCAGCCGCGTCCACACGATAATCAGCTTACCTATGTAAA 240
Query 272 CGGCGATACCAAAATCATGTCGGTCGATCGTGGTATCAGATTTCCGGCT-TTAGTATCGA 330
||||||||||||||||||||||||||| || | ||||||||||| ||| || |||||||
Sbjct 241 CGGCGATACCAAAATCATGTCGGTCGACCGCGCCATCAGATTTCCTGCTCTT-GTATCGA 299
Query 331 AGCTCTCCGCCGTCTGCAGCGGTGGTGGTGATGGAGGAGAAATCTCGTTCAAGTATCAGC 390
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 300 AGCTCTCCGCCGTCTGCAGC---GGCGGTGATGGAGGAGAAATCTCGTTCAAGTATCAGC 356
Query 391 TTCCAGGTGAAGATCTAGATGCGTTGATTTCGGTGACTAATGATGAGGATCTGGAGCACA 450
|||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 357 TTCCAGGTGAAGATCTCGATGCGTTGATTTCGGTGACTAACGATGACGATCTGGAGCACA 416
Query 451 TGATGCATGAGTACGATCGGTTGCTTCGTTTGTCTACTAAACCAGCTAGGATGCGTTTGT 510
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 417 TGATGCATGAGTACGATCGGTTGCTTCGTATGTCTACTAAACCAGCTAGGATGCGTTTGT 476
Query 511 TTCTCTTCCCGTCTTCTCCCATTTCCGGCGGATTTGGCTCCGAAGGTTCGACTAAATCGG 570
|||||||||||||||| || |||||| ||||||||||||| |||||||||||||||||||
Sbjct 477 TTCTCTTCCCGTCTTCACCGATTTCCAGCGGATTTGGCTCTGAAGGTTCGACTAAATCGG 536
Query 571 ATCGGGATACGCTTAATCCAATCCCTAGCCGACCTGAATCGGAGAAATCTGTAACCGCTC 630
||||||||||| || |||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 537 ATCGGGATACGTTTCATCCGATCCCTAGTCGACCTGAATCGGAGAAATCTGTAACCGCTC 596
Query 631 CTCCGAATAATGCTGATTTCTTGTTTGGATCGGAGAAAGTAGCTCCAATTCCGCCGTCGC 690
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 597 CTCCGAATAATGCTGATTTTTTGTTTGGATCGGAGAAAGTAGCTCCAATTCCTCCGTCGC 656
Query 691 CAGTGAAGGTTCCTCAACCGGTACCGGAACCAGTGGTGCTTGAACCGCCGCAGATGTTCG 750
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 657 CAGTGAAGGTGCCTCAACCGGTACCGGAACCAGTGGTGCTTGAACCGCCGCCGATGTTCG 716
Query 751 TAGATCAACGGATGTTACAACCGGAACACGGCGTAAATCCGGCGGAGATTCAAAGACAAA 810
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 717 TAGATGAACGGATGTTACAACCGGAACACGGCGTAAATCCGGCTGAGATTCAAAGACAAA 776
Query 811 TCCAGGAATTTCAGATGATTCAAATCAGAGACCAAGAGCAACAAATGCTTCATCAGAATC 870
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 777 TCCAGGAATTTCAGATGATTCAAATCAGAGATCAAGAGCAACAAATGCTTCATCAGAATC 836
Query 871 AGCTACATcaacaacaacaacaacaaGAGGCTATACATCAAAATCAGCTTCATCACCAAC 930
|||| || |||||||| ||||||||||| |||||| |||| |||||||||||||| ||||
Sbjct 837 AGCTCCAACAACAACATCAACAACAAGAAGCTATAAATCAGAATCAGCTTCATCAACAAC 896
Query 931 AAGAGGTTATACATCAGAATCAGCTGCTTCAACAAGAGGCTATACATCAGAATCAGATGC 990
|||||| |||||||||||||||||| | |||||||||||||||||||||||||||| |||
Sbjct 897 AAGAGGCTATACATCAGAATCAGCTTCATCAACAAGAGGCTATACATCAGAATCAGCTGC 956
Query 991 TTcaacaacaacaacaacaaGAGGCTATGTACAGAAGAAAAACCGAAGACGAAGCCGGAA 1050
|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 957 TTCAACAACAACAACAACAAGAGGCTATGTACAGAAGAAAAAGCGAAGACGAATCCGGAC 1016
Query 1051 GATACTTCCCTCCCACATACACTCAAAATCCGGCGCCG-GTGACGAATCAACAACCTCCG 1109
||||||| ||||| |||||||||||||||||||||||| | ||||||| ||||||||||
Sbjct 1017 GATACTTTCCTCCAACATACACTCAAAATCCGGCGCCGACT-ACGAATCCACAACCTCCG 1075
Query 1110 GTTGGCTACTGGCAAGGAAACACCAACAACAGTAATATTCAGGGGAATATCTACACAACA 1169
||||||||||||||||||||| |||||||| ||| |||| |||||||||||||||||||
Sbjct 1076 ATTGGCTACTGGCAAGGAAACAACAACAACAATAACATTCCGGGGAATATCTACACAACA 1135
Query 1170 ACGTCACAGAATCTACCGGAGcaacaacaacaacaacaacaaGTATACATGATTCCAGCT 1229
||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1136 ACGTCACAGAATCTACCGGAG------------CAACAACAAGTATACATGATTCCAGCT 1183
Query 1230 CAATCTCAAGCTCCAGGGACATTATACCAAAGCGTCATGAGACCAACGGTACAAGGAAAC 1289
||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct 1184 CAATCTCAAGCTCCAGGAACATTATACCAAAGCGTCATGAGACCAACTGTGCAAGGAAAC 1243
Query 1290 CAAGGTTATTACCCATCACCTGTTCAGCGACTTCATCATCCTGATGCATACATGGAACAG 1349
||||| ||||| || |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1244 CAAGGCTATTA-CC--CACCTGTTCAGCGACTTCATCATCCTGATGCATACATGGAGCAG 1300
Query 1350 CAGAACCAGCCAGGTTACAACGTGGTTCAACCACAGCCAACGTTTTCAGGTGGTCCACAA 1409
|||||||||| |||||||||||||||| || | ||| || | |||| |
Sbjct 1301 CAGAACCAGCAAGGTTACAACGTGGTT----CA-A--CAA------CA----G-CCAC-A 1341
Query 1410 GTTATGACTAGTGTTGGTCCGCAAGTTATGACTAGTGTCGGTCCTCCAATGGGGTTACAG 1469
| ||| | || | |||||| ||||||||||||||||| ||||| |||||||||||||||
Sbjct 1342 G-TAT-TC-AG-G-TGGTCCACAAGTTATGACTAGTGTTGGTCCGCCAATGGGGTTACAG 1396
Query 1470 GAACCTTATTCACAGATGGGGAAGCCTGTGTACTATACGGTGGCTGGAGAAGGCATGATG 1529
||||| |||||||||||||| || ||| ||||||||||||||||||||||||||||||||
Sbjct 1397 GAACCGTATTCACAGATGGGAAATCCTATGTACTATACGGTGGCTGGAGAAGGCATGATG 1456
Query 1530 GTTCAACCGCCACcagcc-cagcctcagc---agc---agc---agcagcagTACCAGGG 1579
|||||||||||||| ||| |||||||||| ||| ||| ||||||||||||||||
Sbjct 1457 GTTCAACCGCCACC-GCCTCAGCCTCAGCCTCAGCCTCAGCCTCAGCAGCAGTACCAGGG 1515
Query 1580 AATGGGTCAACCGGTTAGTGGCATGACCGATCTCAGAACCGGACCGGATGGGAAAGTGGC 1639
||||||||||||| | | | |||||||||||||||||||||||||||||||
Sbjct 1516 AATGGGTCAACCG---A----C----C-GATCTCAGAACCGGACCGGATGGGAAAGTGGT 1563
Query 1640 GGTTAACATGGCTGCACCACAAGTTTCAGA---TTCGG-TGTGAGTGTGAGATTGAGTTA 1695
||||||||||||||||||| |||||||| | ||| | || | ||||||| | ||| |
Sbjct 1564 GGTTAACATGGCTGCACCAAAAGTTTCACAAAGTTCAGATGCG-GTGTGAG-T-GAG--A 1618
Query 1696 ACATTGAGGTTAATGTTATGATTATCCATTTCTTTAAACTTTATGATATATGTGTAAAAG 1755
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1619 ---TTGAGGTTAATGTTATGATTATCCATTTAGAAAAACTTTATGATATATGTATAAAAG 1675
Query 1756 TGtttttttAGATCAAACTAGGAATCTGGATTTCTGATGAATCAATTGAAGCACttttga 1815
|| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 TGGTTTTTTAGATCAAATT-GGAATCTGGATTTCTGATGAATCAATTGAAGCACTTTTGA 1734
Query 1816 tgtttttattttatt 1830
|||||||||||||||
Sbjct 1735 TGTTTTTATTTTATT 1749
Score = 113 bits (61), Expect = 4e-24
Identities = 73/78 (94%), Gaps = 3/78 (4%)
Strand=Plus/Plus
Query 888 caacaacaaGAGGCTATACATCAAAATCAGCTTCATCACCAACAAGAGGTTATACATCAG 947
||||||||||||||||||||||| |||||||||||||| | ||||||| ||||||||||
Sbjct 890 CAACAACAAGAGGCTATACATCAGAATCAGCTTCATCA--A-CAAGAGGCTATACATCAG 946
Query 948 AATCAGCTGCTTCAACAA 965
||||||||||||||||||
Sbjct 947 AATCAGCTGCTTCAACAA 964
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74694970445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5