BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09630.1
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940427 jgi|Araly1|940427|scaffold_600971.1 1764 0.0
> Ahg940427 jgi|Araly1|940427|scaffold_600971.1
Length=1204
Score = 1764 bits (955), Expect = 0.0
Identities = 1123/1204 (93%), Gaps = 12/1204 (1%)
Strand=Plus/Plus
Query 194 ATTAGTCAGAACAAATATGGATGTGACTGGCACTGTGACTGTGAGAGATGCATTTGATCG 253
|||| |||||| ||| |||||| ||||| | || |||||||||||||||||||||||
Sbjct 10 ATTAATCAGAAGAAAAATGGATATGACT-G----GT-ACTGTGAGAGATGCATTTGATCG 63
Query 254 AGTTTCTAAAAAACAGAAGCTGTATCACTCAGTTACTCAAGATGTCATTGATCTAGTTTG 313
||||||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 64 AGTTTCTAAGAAACAGAAGCTGTATCACTCAGTTACTCAAGATGTTATCGATCTTGTTTG 123
Query 314 TGATGGAATCCAAGATACATTGACTCGAATCCAATTAGGTAACGACGATGGAGTAGAACC 373
|||||||||||||||||||||||||| ||||||| || ||| ||||||||||||||||
Sbjct 124 TGATGGAATCCAAGATACATTGACTCAAATCCAAACAGATAATAACGATGGAGTAGAACC 183
Query 374 GGAATCGGTTCTTACCGAGTTGAGACGCAAGCTTGATGCTCTTTTACCGATTATCCAGCT 433
||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 184 CGAATCAGTTCTAACCGAGTTGAGGCGCAAGCTTGATGCTCTTTTACCGATTATCCAGCT 243
Query 434 TCAGAAATCACATAAGGAAACTAAATGGAGTCTTAGTAAGTTGGTGAAATTGCTTGAGGT 493
|||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 244 TCAGAAATCACAGAAGGAAACTAAATGGAGTCTTAGCAAGTTGGTGAAATTGTTTGAGGT 303
Query 494 TTCTTACCATCCTGATATATCTCTAGCCTGCTTTAGCGTTGATTTCGATATCAACTTAGT 553
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 304 TTCTTACCATCCTGATATATCTCTAGCCTGCTTCAGCGTTGATTTCGATATCAACTTAAT 363
Query 554 GAATAAGATACTTATCCACCATTGTTACCGAGAAGGGTTGTTCGACGTTGGTGATTGTCT 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 GAATAAGATACTTATCCACCATTGTTACCGAGAAGGGTTGTTCGACGTTGGTGATTGTCT 423
Query 614 GGTTAAGGAGGCTGGAAGAGAGGAAGAAACTGAGGTTAGATCTCAGTTCTTAGAGTTCCA 673
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 424 GGTTAAGGAGTCTGGAAGAGAGGAAGAAACCAAGGTTAGATCTCAGTTCTTAGAGTTCCA 483
Query 674 CCAGATAGTGGACTCATTGAAGCTCAGAAACATTGAGCCTGCAATGAGATGGATCTTTGC 733
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 484 CCAGATAGTGGACTCATTGAAGCTCAGAAACATCGAGCCTGCTATGAGATGGATCTTTGC 543
Query 734 GAACCGCGGAAAGCTGAAGCAAAAGAGTTCAAAGCTGGAGTTTAAGCTCTTAAGTTTGAA 793
||||||||||||||||||||||||| |||| ||| |||||||||| ||| ||||||||||
Sbjct 544 GAACCGCGGAAAGCTGAAGCAAAAGGGTTCGAAGTTGGAGTTTAAACTCATAAGTTTGAA 603
Query 794 GTACTGTGATATATTAAGAGAAGGAAAGAGTGATGATGCTTTGGAGTATGCAAGAACCCA 853
|||||||||||| |||||||||||||| ||| |||||||||||||||||||| ||||||
Sbjct 604 GTACTGTGATATTTTAAGAGAAGGAAACCGTGTTGATGCTTTGGAGTATGCAAAAACCCA 663
Query 854 TTTT-ACGCAATATCCACTCCATTTTAAGGAGATACAAAAGCTTATCACTTGTTTATTAT 912
|||| || ||||||||||| || ||||| |||||||||||||||||||||||| | |||
Sbjct 664 TTTTCAC-CAATATCCACTACACTTTAAAGAGATACAAAAGCTTATCACTTGTCTGCTAT 722
Query 913 GGATTGGAAACTTT-GAGAAAAGTCCTTATGCAGAGATAGTTTCTCCATCATGTTGGGAC 971
|||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 GGATTGAAAA-TTTAGAGAAAAGTCCTTATGCAGAGATAGTTTCTCCATCATGTTGGGAC 781
Query 972 AAGGTAACCAAAGAGCTAATCATGGAATATCACCATCTTCTCGATCAGCCAATTAACTCC 1031
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 782 AAGGTAACCAAAGAGGTAATCATGGAATATCACCATCTTCTTGATCAGCCAATTAACTCC 841
Query 1032 CCGTTGAAAGTCGCTTTATCCGCGGGTTATGAGAGCTTACCGTCACTGTTAAAGCTGGTT 1091
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 842 CCGTTAAAAGTCGCTTTATCCGCGGGTTATGAGAGCTTACCGTCACTTTTAAAGCTGGTT 901
Query 1092 CATCTAATGGCATTGACGAAACAAGAATGGCAAGCAATGAAACAGCTTCCGGTTCCTCTG 1151
||| ||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 902 CATTTAATGGCTTTGACGAAACAAGAATGGCAAGCTATGAAACATCTTCCGGTTCCTCTA 961
Query 1152 GAGTTAGGGAATGAGTATAAGTTCCACTCGGCTTTTGTTTGTCCCGTGAGTAGAGATCAA 1211
||||||||||| |||| | |||| |||||||||||||| ||||| ||||||||||| ||
Sbjct 962 GAGTTAGGGAACGAGTTTCAGTTTCACTCGGCTTTTGTGTGTCCTGTGAGTAGAGACCAG 1021
Query 1212 AGCAGCGAAGAAAACCCGCCGATGCAGTTGCCTTGTGGTCATGTTATTAGCAAGCAGTCA 1271
|||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||
Sbjct 1022 AGCAGCGAAGAAAACCCGCCAATGCTGTTGTCTTGTGGTCATGTTATTAGCAAGCAGTCA 1081
Query 1272 ATGATGAGACTCAGCAAGAACTGCGCTTTCCGCACATTCAAATGCCCTTATTGTCCTGCA 1331
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1082 ATGATGAGACTCAGCAAGAACTGCGCTCACCGCATATTCAAATGCCCTTATTGTCCTGCA 1141
Query 1332 GAGACTTTAGCTTCAGCATGCAGGCAATTATACTTTTGAA-GGATTTGGTAATTTAGTTA 1390
||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1142 GAGACTTCAGCTTCAGCATGCAGGCAATTATACTTTTGAAAGG-TTTGGTAATTTAGTTA 1200
Query 1391 ATTT 1394
||||
Sbjct 1201 ATTT 1204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57287728480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5