BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09640.1
Length=1647
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487780 jgi|Araly1|487780|fgenesh2_kg.6__914__AT5G09640.1 2025 0.0
Ahg481161 jgi|Araly1|481161|fgenesh2_kg.4__221__AT2G22970.3 122 6e-27
Ahg932263 jgi|Araly1|932263|scaffold_400251.1 93.5 5e-18
Ahg481172 jgi|Araly1|481172|fgenesh2_kg.4__232__AT2G23010.2 87.9 2e-16
> Ahg487780 jgi|Araly1|487780|fgenesh2_kg.6__914__AT5G09640.1
Length=1597
Score = 2025 bits (1096), Expect = 0.0
Identities = 1290/1383 (93%), Gaps = 15/1383 (1%)
Strand=Plus/Plus
Query 1 AAGGTTCTTCGTTGACATACTATTCTCTGTTGTAGCAACACTAAGAAGAAGCAGAGAAAA 60
||||||||||||||||||||||||||||||| || |||||||| | || |||||||||
Sbjct 1 AAGGTTCTTCGTTGACATACTATTCTCTGTTCAAGTGACACTAAG-A-AA-CAGAGAAAA 57
Query 61 TGAGAAACCTTAGCTTCATCGTCTTATTTCTATTGACCCTCTTCTTC-ATTCATCATTTG 119
|||||||||||||||||||||||||||||||||| | | ||||| || |||||||||||
Sbjct 58 TGAGAAACCTTAGCTTCATCGTCTTATTTCTATTAAGCATCTTC-TCTATTCATCATTTT 116
Query 120 GTTGATGCTTCTTTGC-TAGTGAAGTCTCTTCCTGGTTTTGAAGGTCCTCTTCCTTTTGA 178
|||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||
Sbjct 117 GTTGATGCTTCTTTGCGT-GTGAAGTATCTTCCTGGTTTTGAAGGTCCTCTTCCTTTTGA 175
Query 179 GCTCGAGACTGGATATGTGAGTATTGGTGAATCTGGAGATGTTGAGCTCTTTTACTACTT 238
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 176 GCTCGAGACTGGATATGTGAGTATTGGCGAATCTGGAGATGTTGAACTCTTTTACTACTT 235
Query 239 TGTGAAATCAGAGAGGAATCCAGAAAATGATCCTCTCATGATTTGGCTCACTGGTGGACC 298
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 TGTGAAATCAGAGAGAAATCCAGAAAATGATCCTCTCATGATTTGGCTCACTGGTGGACC 295
Query 299 TGGCTGCAGCTCCATCTGTGGATTGCTCTTCGCAAACGGTCCTTTAGCTTTTAAAGGGGA 358
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 296 TGGCTGTAGCTCCATCTGTGGATTGCTCTTCGCTAACGGTCCTTTAGCTTTTAAAGGGGA 355
Query 359 TGAGTATAATGGGACAGTACCTCCTCTAGAGTTGACATCTTTTTCATGGACAAAGGTGGC 418
|||||||||||| ||||| |||||| ||||| | ||||||||||||||||||||||||||
Sbjct 356 TGAGTATAATGGAACAGTTCCTCCTTTAGAGCTAACATCTTTTTCATGGACAAAGGTGGC 415
Query 419 TAACATTTTATATTTGGAAGCTCCTGCTGGCTCTGGATACTCTTATGCGAAAACTCGGCG 478
||||||||||||| ||||| ||||||||||||||||||| |||||||| | |||||||||
Sbjct 416 TAACATTTTATATGTGGAATCTCCTGCTGGCTCTGGATATTCTTATGCTAGAACTCGGCG 475
Query 479 TGCTTTTGAGTCGAGCGACACCAAACAAATGCACCAAATTGATCAATTTCTTAGGAGTTG 538
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 476 TGCTTTTGAGACGAGCGACATCAAACAAATGCACCAAATTGATCAATTTCTTAGAAGTTG 535
Query 539 GTTTGTGAAACACCCGGAGTTTATATCGAATCCTTTTTACGTTGGTGGAGATTCATATTC 598
||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 536 GTTTGTGGATCACCCGGAGTTTATATCGAATCCTTTTTATGTTGGTGGAGATTCATATTC 595
Query 599 CGGGAAAATTGTTCCAGGAGCTGTGCAACAAATTTCACTTGGAAATGAGAAGGGCCTCAC 658
|||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||
Sbjct 596 CGGGAAAATTGTTCCAGGAGTTGTGCAACAAACTTCACTTGGAAATGAGAAAGGCCTCAC 655
Query 659 ACCACTCATAAATATTCAGGGTTATGTTCTTGGAAACCCTGTGACAGATAAAAACATTGA 718
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 656 ACCACTCATAAATCTTCAGGGTTATGTTCTTGGAAACCCTGTAACAGATAAAAACATGGA 715
Query 719 AACTAACTATAGAGTTCCATTTGCTCATGGGATGGGACTTATTTCAGATGAGCTCTTTGA 778
| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 ATCTAACTATAGAATTTCATTTGCTCATGGGATGGGACTTATTTCAGATGAGCTCTTTGA 775
Query 779 GTCACTTGAAAGAAGTTGTGGAGGCAAATTCTTCAACGTAGACCCAAGTAATGCAAGATG 838
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 776 GTCACTTGAAAGAAGTTGTGGAGGCAAATTCTTCAACGTAGACCCAAGTAATAAAAGATG 835
Query 839 CTCAAATAATCTTCAAGCTTATGATCATTGTATGTCAGAGATATACTCAGAGCATATTTT 898
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 836 CTCAAATAATCTTCAATCTTATGATCATTGTATGTCAGAGATATACGCAGAGCAAATTTT 895
Query 899 GTTACGAAACTGCAAAGTAGATTACGTCTTGGCAGACACACCAAACATCAGAACCGATAG 958
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 896 GTTACGAAACTGCGAAGTAGATTACGTCTTGGCAGACACACCAAACATCAGAACCGATGG 955
Query 959 AAGAAGAGTAA-TGAAGGAATTTTCAGTAAACGATTCATCATCATTGCCACCTCCTAGCT 1017
|||||||| || ||||||| ||||||| ||| ||||||||||||||||||||||||||||
Sbjct 956 AAGAAGAG-AACTGAAGGAGTTTTCAGGAAATGATTCATCATCATTGCCACCTCCTAGCT 1014
Query 1018 GCTTTACTTATAGGTATTTTCTGTCTGCCTTTTGGGCAAACGATGAAAATGTACGCAGAG 1077
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1015 GCTTTACTTATAAGTATTTTCTGTCTGCCTTTTGGGCTAACGATGAAAATGTACGCAGAG 1074
Query 1078 CTCTAGGCGTGAAAAAGGAAGTAGGAAAATGGAACCGATGCAACAGCCAAAACATACCAT 1137
||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 CTCTAGGCGTGAAGACGGGAGTAGGAAAATGGAACCGATGCAACAGCCAAAACATACCAT 1134
Query 1138 ATACATTTGAGATTTTCAATGCAGTTCCTTATCACGTAAACAATAGTCTTAAAGGCTTCC 1197
|||||||||||||| ||||||| |||| |||||||||||||||| | || | || |
Sbjct 1135 ATACATTTGAGATTAACAATGCATTTCCGTATCACGTAAACAATATTAGTA--GTTTTTC 1192
Query 1198 GCTCTCTCATCT---ACAGTGGTGATCATGATTCTATGGTACCATTTTCTTCAACTCAAG 1254
| || | ||| | | |||||||||||||||||||||||| || |||||||||||||
Sbjct 1193 TTTTTC-CTTCTTTGAAATTGGTGATCATGATTCTATGGTACCCTTCTCTTCAACTCAAG 1251
Query 1255 CATGGATCAGAGCTCTCAACTATTCCATTGTTGATGACTGGAGACCTTGGATGATGAGTA 1314
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1252 CATGGATCAGAGCTCTCAACTATTCCATTGTTGATGACTGGAGAGCTTGGATGATGAGTA 1311
Query 1315 GCAATCAAGTCGCAGGCTATACAAGGACTTACGCAAACAAGATGACATTTGCAACCATCA 1374
|||||||||| || || ||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1312 GCAATCAAGTTGCTGGATATACAAGGACTTACGCGAATAAGATGACATTTGCAACCATCA 1371
Query 1375 AGG 1377
|||
Sbjct 1372 AGG 1374
> Ahg481161 jgi|Araly1|481161|fgenesh2_kg.4__221__AT2G22970.3
Length=1574
Score = 122 bits (66), Expect = 6e-27
Identities = 149/188 (79%), Gaps = 9/188 (5%)
Strand=Plus/Plus
Query 1182 AGTCTTAAAGGCTT-CCGCTCTCTCATCTACAGTGGTGATCATGATTCTA-TGGTACCAT 1239
||| |||| || || ||| |||||||||||||||||||||||||||| | |||| || |
Sbjct 1052 AGTATTAATGG-TTACCGATCTCTCATCTACAGTGGTGATCATGATT-TGGTGGTTCC-T 1108
Query 1240 TTTCTT-CAACTCAAGCATGGATCAGAGCTCTCAACTATTCCATTGTTGATGACTGGAGA 1298
|| | |||||||||||||||| | | |||| || || ||||| || |||| ||||||
Sbjct 1109 TTCCAAGCAACTCAAGCATGGATAAAATCTCTAAATTACTCCATCATTCATGAATGGAGA 1168
Query 1299 CCTTGGATGATGAGTAGCAATCAAGTCGCAGGCTATACAAGGACTTACGCAAACAAGATG 1358
||||||||||| | || | |||| |||| || || ||||| ||||| | || ||||||
Sbjct 1169 CCTTGGATGATTAA-AG-A-TCAAATCGCTGGATACACAAGAACTTATTCCAATAAGATG 1225
Query 1359 ACATTTGC 1366
|| |||||
Sbjct 1226 ACTTTTGC 1233
> Ahg932263 jgi|Araly1|932263|scaffold_400251.1
Length=1260
Score = 93.5 bits (50), Expect = 5e-18
Identities = 116/147 (79%), Gaps = 7/147 (5%)
Strand=Plus/Plus
Query 1191 GGCTTCCGCTCTCTCATCTACAGTGGTGATCATGATTCT-ATGGTACCATTT-TCTTCAA 1248
|||| ||| |||||||||||||||||||||||||||| | | ||| |||| || |||
Sbjct 1062 GGCTACCGATCTCTCATCTACAGTGGTGATCATGATT-TGACGGTTCCATACCTCG-CAA 1119
Query 1249 CTCAAGCATGGATCAGAGCTCTCAACTATTCCATTGTTGATGACTGGAGACCTTGGATGA 1308
||||||| ||||| | | |||| || || ||||| || |||| |||||||||||| |||
Sbjct 1120 CTCAAGCCTGGATAAAATCTCTAAATTACTCCATCATTCATGAATGGAGACCTTGGGTGA 1179
Query 1309 TGAGTAGCAATCAAGTCGCAGGCTATA 1335
| | || | |||| |||| || ||||
Sbjct 1180 TTAA-AG-A-TCAAATCGCTGGGTATA 1203
> Ahg481172 jgi|Araly1|481172|fgenesh2_kg.4__232__AT2G23010.2
Length=1376
Score = 87.9 bits (47), Expect = 2e-16
Identities = 131/169 (78%), Gaps = 16/169 (9%)
Strand=Plus/Plus
Query 141 AAGTCTCTTCCTGGTTTTGAAGGTCCTCTTCCTTTTGAGCTCGAGACTGGATATGT-GAG 199
|||| |||||||||||||||||||||||||||||| |||||||| || || || | | |
Sbjct 67 AAGTTTCTTCCTGGTTTTGAAGGTCCTCTTCCTTTCGAGCTCGAAACCGGGTACATTG-G 125
Query 200 TATTGGTGAATCTGGAGA-TGTTG-AGCTCTTT-TACTACTTTG-TGAAATCAGAGAGGA 255
|||||||||| || ||| ||| | | | ||| ||||| ||| | ||||| |||| ||
Sbjct 126 TATTGGTGAAGATG-AGAATGT-GCAATT-TTTCTACTA-TTTCATCAAATCTGAGAAGA 181
Query 256 ATCCAG-AA-AATGATCCTCT-CATGATTTGGCTCACTGGTGGACCTGG 301
| || | || || |||||||| | | || ||| | | ||| ||||||||
Sbjct 182 A-CCTGGAAGAA-GATCCTCTTCTT-ATATGGTTAAATGGAGGACCTGG 227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61744287145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5