BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G09640.1 Length=1647 Score E Sequences producing significant alignments: (Bits) Value Ahg487780 jgi|Araly1|487780|fgenesh2_kg.6__914__AT5G09640.1 2025 0.0 Ahg481161 jgi|Araly1|481161|fgenesh2_kg.4__221__AT2G22970.3 122 6e-27 Ahg932263 jgi|Araly1|932263|scaffold_400251.1 93.5 5e-18 Ahg481172 jgi|Araly1|481172|fgenesh2_kg.4__232__AT2G23010.2 87.9 2e-16 > Ahg487780 jgi|Araly1|487780|fgenesh2_kg.6__914__AT5G09640.1 Length=1597 Score = 2025 bits (1096), Expect = 0.0 Identities = 1290/1383 (93%), Gaps = 15/1383 (1%) Strand=Plus/Plus Query 1 AAGGTTCTTCGTTGACATACTATTCTCTGTTGTAGCAACACTAAGAAGAAGCAGAGAAAA 60 ||||||||||||||||||||||||||||||| || |||||||| | || ||||||||| Sbjct 1 AAGGTTCTTCGTTGACATACTATTCTCTGTTCAAGTGACACTAAG-A-AA-CAGAGAAAA 57 Query 61 TGAGAAACCTTAGCTTCATCGTCTTATTTCTATTGACCCTCTTCTTC-ATTCATCATTTG 119 |||||||||||||||||||||||||||||||||| | | ||||| || ||||||||||| Sbjct 58 TGAGAAACCTTAGCTTCATCGTCTTATTTCTATTAAGCATCTTC-TCTATTCATCATTTT 116 Query 120 GTTGATGCTTCTTTGC-TAGTGAAGTCTCTTCCTGGTTTTGAAGGTCCTCTTCCTTTTGA 178 |||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||| Sbjct 117 GTTGATGCTTCTTTGCGT-GTGAAGTATCTTCCTGGTTTTGAAGGTCCTCTTCCTTTTGA 175 Query 179 GCTCGAGACTGGATATGTGAGTATTGGTGAATCTGGAGATGTTGAGCTCTTTTACTACTT 238 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 176 GCTCGAGACTGGATATGTGAGTATTGGCGAATCTGGAGATGTTGAACTCTTTTACTACTT 235 Query 239 TGTGAAATCAGAGAGGAATCCAGAAAATGATCCTCTCATGATTTGGCTCACTGGTGGACC 298 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 236 TGTGAAATCAGAGAGAAATCCAGAAAATGATCCTCTCATGATTTGGCTCACTGGTGGACC 295 Query 299 TGGCTGCAGCTCCATCTGTGGATTGCTCTTCGCAAACGGTCCTTTAGCTTTTAAAGGGGA 358 |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 296 TGGCTGTAGCTCCATCTGTGGATTGCTCTTCGCTAACGGTCCTTTAGCTTTTAAAGGGGA 355 Query 359 TGAGTATAATGGGACAGTACCTCCTCTAGAGTTGACATCTTTTTCATGGACAAAGGTGGC 418 |||||||||||| ||||| |||||| ||||| | |||||||||||||||||||||||||| Sbjct 356 TGAGTATAATGGAACAGTTCCTCCTTTAGAGCTAACATCTTTTTCATGGACAAAGGTGGC 415 Query 419 TAACATTTTATATTTGGAAGCTCCTGCTGGCTCTGGATACTCTTATGCGAAAACTCGGCG 478 ||||||||||||| ||||| ||||||||||||||||||| |||||||| | ||||||||| Sbjct 416 TAACATTTTATATGTGGAATCTCCTGCTGGCTCTGGATATTCTTATGCTAGAACTCGGCG 475 Query 479 TGCTTTTGAGTCGAGCGACACCAAACAAATGCACCAAATTGATCAATTTCTTAGGAGTTG 538 |||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 476 TGCTTTTGAGACGAGCGACATCAAACAAATGCACCAAATTGATCAATTTCTTAGAAGTTG 535 Query 539 GTTTGTGAAACACCCGGAGTTTATATCGAATCCTTTTTACGTTGGTGGAGATTCATATTC 598 ||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 536 GTTTGTGGATCACCCGGAGTTTATATCGAATCCTTTTTATGTTGGTGGAGATTCATATTC 595 Query 599 CGGGAAAATTGTTCCAGGAGCTGTGCAACAAATTTCACTTGGAAATGAGAAGGGCCTCAC 658 |||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||| Sbjct 596 CGGGAAAATTGTTCCAGGAGTTGTGCAACAAACTTCACTTGGAAATGAGAAAGGCCTCAC 655 Query 659 ACCACTCATAAATATTCAGGGTTATGTTCTTGGAAACCCTGTGACAGATAAAAACATTGA 718 ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| || Sbjct 656 ACCACTCATAAATCTTCAGGGTTATGTTCTTGGAAACCCTGTAACAGATAAAAACATGGA 715 Query 719 AACTAACTATAGAGTTCCATTTGCTCATGGGATGGGACTTATTTCAGATGAGCTCTTTGA 778 | ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 716 ATCTAACTATAGAATTTCATTTGCTCATGGGATGGGACTTATTTCAGATGAGCTCTTTGA 775 Query 779 GTCACTTGAAAGAAGTTGTGGAGGCAAATTCTTCAACGTAGACCCAAGTAATGCAAGATG 838 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 776 GTCACTTGAAAGAAGTTGTGGAGGCAAATTCTTCAACGTAGACCCAAGTAATAAAAGATG 835 Query 839 CTCAAATAATCTTCAAGCTTATGATCATTGTATGTCAGAGATATACTCAGAGCATATTTT 898 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 836 CTCAAATAATCTTCAATCTTATGATCATTGTATGTCAGAGATATACGCAGAGCAAATTTT 895 Query 899 GTTACGAAACTGCAAAGTAGATTACGTCTTGGCAGACACACCAAACATCAGAACCGATAG 958 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 896 GTTACGAAACTGCGAAGTAGATTACGTCTTGGCAGACACACCAAACATCAGAACCGATGG 955 Query 959 AAGAAGAGTAA-TGAAGGAATTTTCAGTAAACGATTCATCATCATTGCCACCTCCTAGCT 1017 |||||||| || ||||||| ||||||| ||| |||||||||||||||||||||||||||| Sbjct 956 AAGAAGAG-AACTGAAGGAGTTTTCAGGAAATGATTCATCATCATTGCCACCTCCTAGCT 1014 Query 1018 GCTTTACTTATAGGTATTTTCTGTCTGCCTTTTGGGCAAACGATGAAAATGTACGCAGAG 1077 |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1015 GCTTTACTTATAAGTATTTTCTGTCTGCCTTTTGGGCTAACGATGAAAATGTACGCAGAG 1074 Query 1078 CTCTAGGCGTGAAAAAGGAAGTAGGAAAATGGAACCGATGCAACAGCCAAAACATACCAT 1137 ||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| Sbjct 1075 CTCTAGGCGTGAAGACGGGAGTAGGAAAATGGAACCGATGCAACAGCCAAAACATACCAT 1134 Query 1138 ATACATTTGAGATTTTCAATGCAGTTCCTTATCACGTAAACAATAGTCTTAAAGGCTTCC 1197 |||||||||||||| ||||||| |||| |||||||||||||||| | || | || | Sbjct 1135 ATACATTTGAGATTAACAATGCATTTCCGTATCACGTAAACAATATTAGTA--GTTTTTC 1192 Query 1198 GCTCTCTCATCT---ACAGTGGTGATCATGATTCTATGGTACCATTTTCTTCAACTCAAG 1254 | || | ||| | | |||||||||||||||||||||||| || ||||||||||||| Sbjct 1193 TTTTTC-CTTCTTTGAAATTGGTGATCATGATTCTATGGTACCCTTCTCTTCAACTCAAG 1251 Query 1255 CATGGATCAGAGCTCTCAACTATTCCATTGTTGATGACTGGAGACCTTGGATGATGAGTA 1314 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1252 CATGGATCAGAGCTCTCAACTATTCCATTGTTGATGACTGGAGAGCTTGGATGATGAGTA 1311 Query 1315 GCAATCAAGTCGCAGGCTATACAAGGACTTACGCAAACAAGATGACATTTGCAACCATCA 1374 |||||||||| || || ||||||||||||||||| || |||||||||||||||||||||| Sbjct 1312 GCAATCAAGTTGCTGGATATACAAGGACTTACGCGAATAAGATGACATTTGCAACCATCA 1371 Query 1375 AGG 1377 ||| Sbjct 1372 AGG 1374 > Ahg481161 jgi|Araly1|481161|fgenesh2_kg.4__221__AT2G22970.3 Length=1574 Score = 122 bits (66), Expect = 6e-27 Identities = 149/188 (79%), Gaps = 9/188 (5%) Strand=Plus/Plus Query 1182 AGTCTTAAAGGCTT-CCGCTCTCTCATCTACAGTGGTGATCATGATTCTA-TGGTACCAT 1239 ||| |||| || || ||| |||||||||||||||||||||||||||| | |||| || | Sbjct 1052 AGTATTAATGG-TTACCGATCTCTCATCTACAGTGGTGATCATGATT-TGGTGGTTCC-T 1108 Query 1240 TTTCTT-CAACTCAAGCATGGATCAGAGCTCTCAACTATTCCATTGTTGATGACTGGAGA 1298 || | |||||||||||||||| | | |||| || || ||||| || |||| |||||| Sbjct 1109 TTCCAAGCAACTCAAGCATGGATAAAATCTCTAAATTACTCCATCATTCATGAATGGAGA 1168 Query 1299 CCTTGGATGATGAGTAGCAATCAAGTCGCAGGCTATACAAGGACTTACGCAAACAAGATG 1358 ||||||||||| | || | |||| |||| || || ||||| ||||| | || |||||| Sbjct 1169 CCTTGGATGATTAA-AG-A-TCAAATCGCTGGATACACAAGAACTTATTCCAATAAGATG 1225 Query 1359 ACATTTGC 1366 || ||||| Sbjct 1226 ACTTTTGC 1233 > Ahg932263 jgi|Araly1|932263|scaffold_400251.1 Length=1260 Score = 93.5 bits (50), Expect = 5e-18 Identities = 116/147 (79%), Gaps = 7/147 (5%) Strand=Plus/Plus Query 1191 GGCTTCCGCTCTCTCATCTACAGTGGTGATCATGATTCT-ATGGTACCATTT-TCTTCAA 1248 |||| ||| |||||||||||||||||||||||||||| | | ||| |||| || ||| Sbjct 1062 GGCTACCGATCTCTCATCTACAGTGGTGATCATGATT-TGACGGTTCCATACCTCG-CAA 1119 Query 1249 CTCAAGCATGGATCAGAGCTCTCAACTATTCCATTGTTGATGACTGGAGACCTTGGATGA 1308 ||||||| ||||| | | |||| || || ||||| || |||| |||||||||||| ||| Sbjct 1120 CTCAAGCCTGGATAAAATCTCTAAATTACTCCATCATTCATGAATGGAGACCTTGGGTGA 1179 Query 1309 TGAGTAGCAATCAAGTCGCAGGCTATA 1335 | | || | |||| |||| || |||| Sbjct 1180 TTAA-AG-A-TCAAATCGCTGGGTATA 1203 > Ahg481172 jgi|Araly1|481172|fgenesh2_kg.4__232__AT2G23010.2 Length=1376 Score = 87.9 bits (47), Expect = 2e-16 Identities = 131/169 (78%), Gaps = 16/169 (9%) Strand=Plus/Plus Query 141 AAGTCTCTTCCTGGTTTTGAAGGTCCTCTTCCTTTTGAGCTCGAGACTGGATATGT-GAG 199 |||| |||||||||||||||||||||||||||||| |||||||| || || || | | | Sbjct 67 AAGTTTCTTCCTGGTTTTGAAGGTCCTCTTCCTTTCGAGCTCGAAACCGGGTACATTG-G 125 Query 200 TATTGGTGAATCTGGAGA-TGTTG-AGCTCTTT-TACTACTTTG-TGAAATCAGAGAGGA 255 |||||||||| || ||| ||| | | | ||| ||||| ||| | ||||| |||| || Sbjct 126 TATTGGTGAAGATG-AGAATGT-GCAATT-TTTCTACTA-TTTCATCAAATCTGAGAAGA 181 Query 256 ATCCAG-AA-AATGATCCTCT-CATGATTTGGCTCACTGGTGGACCTGG 301 | || | || || |||||||| | | || ||| | | ||| |||||||| Sbjct 182 A-CCTGGAAGAA-GATCCTCTTCTT-ATATGGTTAAATGGAGGACCTGG 227 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61744287145 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5