BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G09650.1 Length=1181 Score E Sequences producing significant alignments: (Bits) Value Ahg487781 jgi|Araly1|487781|fgenesh2_kg.6__915__AT5G09650.1 1724 0.0 Ahg358655 jgi|Araly1|358655|fgenesh1_pg.C_scaffold_8002442 252 5e-66 > Ahg487781 jgi|Araly1|487781|fgenesh2_kg.6__915__AT5G09650.1 Length=1089 Score = 1724 bits (933), Expect = 0.0 Identities = 1047/1101 (95%), Gaps = 12/1101 (1%) Strand=Plus/Plus Query 1 TTTTTGTGTTCTGTCTTTCTTGGTGGTGTGATAAAGAATAAAGAGAGCCAGTCGAGGGTA 60 ||||||||||||||| ||| | | | ||||||||||||||||||||||||| ||||||| Sbjct 1 TTTTTGTGTTCTGTC-TTC-T--T-G-GTGATAAAGAATAAAGAGAGCCAGT-GAGGGTA 53 Query 61 AAACGAAAGGCCACCATTTTCAATCTTTCCACAATAATGGCGGCTACTAGAGTGTTAACT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 54 AAACGAAAGGCCACCATTTTCAATCTTTCCACAATAATGGCGGCTACTAGAGTGTTAACT 113 Query 121 GCAGCGACGGCCGTGACCCAAACCACCTCCTGTTTCCTCGCCAAGCAAGCTTTCACTCTT 180 || ||||||||||| |||||||||||||| |||||||||||||||| |||||| ||| Sbjct 114 GCTGCGACGGCCGTAACCCAAACCACCTCGTGTTTCCTCGCCAAGCGAGCTTTTGTTCTA 173 Query 181 CCGGCGAAGAAATCCTGCGGCGGATTTGGTGGTCTCTGCTTCAGCAGAAGAGCTTTGGTG 240 ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||| Sbjct 174 CCGGCGAAGAAATCCTGCGGCGGATTTGGCGGTCTCTGCTT---CAGAAGAGATTTGGTG 230 Query 241 TTGAAATCTAAGAGACCTTTCTCCTGCAGTGCCATTTACAATCCTCAGGTTAAGGTTCAA 300 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 231 TTGAAATCTAAGAGACCCTTCTCCTGCAGTGCCATTTACAATCCTCAGGTTAAGGTTCAA 290 Query 301 GAAGAAGGTCCGGCCGAATCCCTAGATTATCGAGTTTTCTTCCTCGATGGTTCTGGAAAG 360 ||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 291 GAAGAGGGTCCGCCCGAATCCCTAGATTATCGGGTTTTCTTCCTCGATGGTTCTGGAAAG 350 Query 361 AAGGTTTCTCCATGGCATGATATACCATTGACCTTAGGCGATGGAGTTTTCAACTTTATA 420 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 351 AAGGTTTCTCCATGGCATGATATACCATTGACCTTAGGAGATGGAGTCTTCAACTTTATA 410 Query 421 GTTGAAATACCTAAAGAGTCAAAAGCAAAAATGGAGGTTGCTACTGATGAAGATTTCACT 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 411 GTTGAAATACCTAAAGAGTCAAAAGCAAAAATGGAGGTTGCTACTGATGAAGATTTCACT 470 Query 481 CCTATTAAGCAGGATACTAAGAAGGGGAAGCTCAGATATTATCCGTATAACATTAACTGG 540 ||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 471 CCTATTAAGCAAGATACTAAGAAGGGCAAGCTCAGATATTATCCGTATAACATAAACTGG 530 Query 541 AACTATGGGTTGCTTCCTCAAACATGGGAAGATCCATCTCATGCAAATTCTGAAGTTGAA 600 ||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||| Sbjct 531 AACTATGGGTTGCTTCCACAGACATGGGAAGATCCATCTCACGCAAATTCTGAAGTTGAA 590 Query 601 GGATGTTTTGGGGATAATGATCCAGTTGATGTTGTTGAGATTGGTGAAACACAAAGGAAG 660 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 591 GGATGTTTTGGGGATAATGATCCAGTTGATGTTGTTGAGATTGGTGAAACTCAAAGGAAG 650 Query 661 ATAGGCGATATTCTAAAGATAAAGCCTTTAGCTGCTTTAGCTATGATTGATGAAGGTGAG 720 ||||| ||| ||||||| || ||||||||||||||||||||||||||||||||||| ||| Sbjct 651 ATAGGAGATGTTCTAAAAATCAAGCCTTTAGCTGCTTTAGCTATGATTGATGAAGGAGAG 710 Query 721 CTAGACTGGAAGATTGTTGCCATTTCTTTGGATGACCCAAAAGCTCATCTTGTGAATGAT 780 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 711 CTAGACTGGAAGATTGTTGCTATTTCTTTGGATGACCCAAAAGCTCATCTTGTGAATGAT 770 Query 781 GTTGAAGATGTTGAGAAACATTTCCCGGGTACACTAACAGCCATTAGAGACTGGTTTAGA 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 771 GTTGAAGATGTTGAGAAACATTTCCCGGGTACACTAACAGCCATTAGAGACTGGTTTAGA 830 Query 841 GACTACAAGATCCCAGATGGAAAGCCTGCTAACAGATTTGGTCTTGGAGACAAACCAGCA 900 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 831 GACTACAAGATCCCAGACGGAAAGCCTGCTAACAGATTTGGTCTTGGAGACAAACCAGCA 890 Query 901 AACAAAGACTATGCTTTGAAGATCATCCAAGAAACAAATGAATCATGGGCTAAACTTGTG 960 |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 891 AACAAAGAATATGCTTTGAAGATCATCCATGAAACAAATGAATCATGGGCTAAACTTGTG 950 Query 961 AAGAGATCAGTTGATGCTGGAGACCTTTCACTTTACTGAACATATTTTGCAATGTCGACT 1020 ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| | | Sbjct 951 AAGAGATCAGTTGATGCTGGAGACCTTTCACTTTACTGAACATATCTTGCTATGTCCAAT 1010 Query 1021 TATGAGGTCGAATAATGAATAGACTCAAGATTCCTATATCATTCTTGTTGTTTCCTTTCA 1080 |||||| |||||||||||| ||||| ||| |||||||||||||||||| |||| ||||| Sbjct 1011 TATGAGTTCGAATAATGAACAGACTGGAGAGTCCTATATCATTCTTGTT-TTTC-TTTCA 1068 Query 1081 ATTGAGATGTAAACATTGGGA 1101 |||||||||||||||||||| Sbjct 1069 TTTGAGATGTAAACATTGGGA 1089 > Ahg358655 jgi|Araly1|358655|fgenesh1_pg.C_scaffold_8002442 Length=723 Score = 252 bits (136), Expect = 5e-66 Identities = 190/215 (88%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 316 GAATCCCTAGATTATC-GAGTTTT-CTTCCTCGATGGTTCTGGAAAGAAGGTTTCTCCAT 373 ||| |||| ||||| | ||||||| ||| | |||||||||||||||||||||||||||| Sbjct 145 GAAACCCTTGATTA-CAGAGTTTTCCTT-CAAGATGGTTCTGGAAAGAAGGTTTCTCCAT 202 Query 374 GGCATGATATACCATTGACCTT-AGGCGATGGAGTTTT-CAACTTTATAGTTGAAATACC 431 ||||||||||||||||| | || ||| ||||||||||| || ||||||||| ||||| || Sbjct 203 GGCATGATATACCATTG-CATTTAGGAGATGGAGTTTTTCA-CTTTATAGTGGAAATTCC 260 Query 432 TAAAGAGTCAAAAGCAAAAATGGAGGTTGCTACTGATGAAGATTTCACTCCTATTAAGCA 491 ||||||||| | | | || |||||||||||||||||||||| |||||||||||||||||| Sbjct 261 TAAAGAGTCGAGATCTAAGATGGAGGTTGCTACTGATGAAGCTTTCACTCCTATTAAGCA 320 Query 492 GGATACTAAGAAGGGGAAGCTCAGATATTATCCGT 526 || |||||||| |||||||||||||||||||||| Sbjct 321 AGACACTAAGAAAGGGAAGCTCAGATATTATCCGT 355 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44070092052 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5