BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09650.1
Length=1181
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487781 jgi|Araly1|487781|fgenesh2_kg.6__915__AT5G09650.1 1724 0.0
Ahg358655 jgi|Araly1|358655|fgenesh1_pg.C_scaffold_8002442 252 5e-66
> Ahg487781 jgi|Araly1|487781|fgenesh2_kg.6__915__AT5G09650.1
Length=1089
Score = 1724 bits (933), Expect = 0.0
Identities = 1047/1101 (95%), Gaps = 12/1101 (1%)
Strand=Plus/Plus
Query 1 TTTTTGTGTTCTGTCTTTCTTGGTGGTGTGATAAAGAATAAAGAGAGCCAGTCGAGGGTA 60
||||||||||||||| ||| | | | ||||||||||||||||||||||||| |||||||
Sbjct 1 TTTTTGTGTTCTGTC-TTC-T--T-G-GTGATAAAGAATAAAGAGAGCCAGT-GAGGGTA 53
Query 61 AAACGAAAGGCCACCATTTTCAATCTTTCCACAATAATGGCGGCTACTAGAGTGTTAACT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 54 AAACGAAAGGCCACCATTTTCAATCTTTCCACAATAATGGCGGCTACTAGAGTGTTAACT 113
Query 121 GCAGCGACGGCCGTGACCCAAACCACCTCCTGTTTCCTCGCCAAGCAAGCTTTCACTCTT 180
|| ||||||||||| |||||||||||||| |||||||||||||||| |||||| |||
Sbjct 114 GCTGCGACGGCCGTAACCCAAACCACCTCGTGTTTCCTCGCCAAGCGAGCTTTTGTTCTA 173
Query 181 CCGGCGAAGAAATCCTGCGGCGGATTTGGTGGTCTCTGCTTCAGCAGAAGAGCTTTGGTG 240
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 174 CCGGCGAAGAAATCCTGCGGCGGATTTGGCGGTCTCTGCTT---CAGAAGAGATTTGGTG 230
Query 241 TTGAAATCTAAGAGACCTTTCTCCTGCAGTGCCATTTACAATCCTCAGGTTAAGGTTCAA 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 TTGAAATCTAAGAGACCCTTCTCCTGCAGTGCCATTTACAATCCTCAGGTTAAGGTTCAA 290
Query 301 GAAGAAGGTCCGGCCGAATCCCTAGATTATCGAGTTTTCTTCCTCGATGGTTCTGGAAAG 360
||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 291 GAAGAGGGTCCGCCCGAATCCCTAGATTATCGGGTTTTCTTCCTCGATGGTTCTGGAAAG 350
Query 361 AAGGTTTCTCCATGGCATGATATACCATTGACCTTAGGCGATGGAGTTTTCAACTTTATA 420
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 351 AAGGTTTCTCCATGGCATGATATACCATTGACCTTAGGAGATGGAGTCTTCAACTTTATA 410
Query 421 GTTGAAATACCTAAAGAGTCAAAAGCAAAAATGGAGGTTGCTACTGATGAAGATTTCACT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 GTTGAAATACCTAAAGAGTCAAAAGCAAAAATGGAGGTTGCTACTGATGAAGATTTCACT 470
Query 481 CCTATTAAGCAGGATACTAAGAAGGGGAAGCTCAGATATTATCCGTATAACATTAACTGG 540
||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 471 CCTATTAAGCAAGATACTAAGAAGGGCAAGCTCAGATATTATCCGTATAACATAAACTGG 530
Query 541 AACTATGGGTTGCTTCCTCAAACATGGGAAGATCCATCTCATGCAAATTCTGAAGTTGAA 600
||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 531 AACTATGGGTTGCTTCCACAGACATGGGAAGATCCATCTCACGCAAATTCTGAAGTTGAA 590
Query 601 GGATGTTTTGGGGATAATGATCCAGTTGATGTTGTTGAGATTGGTGAAACACAAAGGAAG 660
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 591 GGATGTTTTGGGGATAATGATCCAGTTGATGTTGTTGAGATTGGTGAAACTCAAAGGAAG 650
Query 661 ATAGGCGATATTCTAAAGATAAAGCCTTTAGCTGCTTTAGCTATGATTGATGAAGGTGAG 720
||||| ||| ||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 651 ATAGGAGATGTTCTAAAAATCAAGCCTTTAGCTGCTTTAGCTATGATTGATGAAGGAGAG 710
Query 721 CTAGACTGGAAGATTGTTGCCATTTCTTTGGATGACCCAAAAGCTCATCTTGTGAATGAT 780
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 711 CTAGACTGGAAGATTGTTGCTATTTCTTTGGATGACCCAAAAGCTCATCTTGTGAATGAT 770
Query 781 GTTGAAGATGTTGAGAAACATTTCCCGGGTACACTAACAGCCATTAGAGACTGGTTTAGA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 GTTGAAGATGTTGAGAAACATTTCCCGGGTACACTAACAGCCATTAGAGACTGGTTTAGA 830
Query 841 GACTACAAGATCCCAGATGGAAAGCCTGCTAACAGATTTGGTCTTGGAGACAAACCAGCA 900
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 GACTACAAGATCCCAGACGGAAAGCCTGCTAACAGATTTGGTCTTGGAGACAAACCAGCA 890
Query 901 AACAAAGACTATGCTTTGAAGATCATCCAAGAAACAAATGAATCATGGGCTAAACTTGTG 960
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 891 AACAAAGAATATGCTTTGAAGATCATCCATGAAACAAATGAATCATGGGCTAAACTTGTG 950
Query 961 AAGAGATCAGTTGATGCTGGAGACCTTTCACTTTACTGAACATATTTTGCAATGTCGACT 1020
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| | |
Sbjct 951 AAGAGATCAGTTGATGCTGGAGACCTTTCACTTTACTGAACATATCTTGCTATGTCCAAT 1010
Query 1021 TATGAGGTCGAATAATGAATAGACTCAAGATTCCTATATCATTCTTGTTGTTTCCTTTCA 1080
|||||| |||||||||||| ||||| ||| |||||||||||||||||| |||| |||||
Sbjct 1011 TATGAGTTCGAATAATGAACAGACTGGAGAGTCCTATATCATTCTTGTT-TTTC-TTTCA 1068
Query 1081 ATTGAGATGTAAACATTGGGA 1101
||||||||||||||||||||
Sbjct 1069 TTTGAGATGTAAACATTGGGA 1089
> Ahg358655 jgi|Araly1|358655|fgenesh1_pg.C_scaffold_8002442
Length=723
Score = 252 bits (136), Expect = 5e-66
Identities = 190/215 (88%), Gaps = 8/215 (4%)
Strand=Plus/Plus
Query 316 GAATCCCTAGATTATC-GAGTTTT-CTTCCTCGATGGTTCTGGAAAGAAGGTTTCTCCAT 373
||| |||| ||||| | ||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 145 GAAACCCTTGATTA-CAGAGTTTTCCTT-CAAGATGGTTCTGGAAAGAAGGTTTCTCCAT 202
Query 374 GGCATGATATACCATTGACCTT-AGGCGATGGAGTTTT-CAACTTTATAGTTGAAATACC 431
||||||||||||||||| | || ||| ||||||||||| || ||||||||| ||||| ||
Sbjct 203 GGCATGATATACCATTG-CATTTAGGAGATGGAGTTTTTCA-CTTTATAGTGGAAATTCC 260
Query 432 TAAAGAGTCAAAAGCAAAAATGGAGGTTGCTACTGATGAAGATTTCACTCCTATTAAGCA 491
||||||||| | | | || |||||||||||||||||||||| ||||||||||||||||||
Sbjct 261 TAAAGAGTCGAGATCTAAGATGGAGGTTGCTACTGATGAAGCTTTCACTCCTATTAAGCA 320
Query 492 GGATACTAAGAAGGGGAAGCTCAGATATTATCCGT 526
|| |||||||| ||||||||||||||||||||||
Sbjct 321 AGACACTAAGAAAGGGAAGCTCAGATATTATCCGT 355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44070092052
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5