BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09672.1
Length=2292
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940431 jgi|Araly1|940431|scaffold_600975.1 2468 0.0
Ahg358659 jgi|Araly1|358659|fgenesh1_pg.C_scaffold_8002446 813 0.0
> Ahg940431 jgi|Araly1|940431|scaffold_600975.1
Length=1682
Score = 2468 bits (1336), Expect = 0.0
Identities = 1573/1686 (93%), Gaps = 21/1686 (1%)
Strand=Plus/Plus
Query 433 CAT-TCTCTAGTGCCATTAATATGGGTGACACCGCTCTTAGCCTGAAGTGTCTTGGGGGC 491
||| |||||| |||| |||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1 CATCTCTCTAATGCCGTTAATATGGGTGACACCGCTCTTAGCCTGAAGTGCCTTGGGGAC 60
Query 492 TCTGAAAACCAATTTTGTTCCGATGTATCTAGTTTCACTGATGATGGCTGCCGGTTAGTC 551
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 61 TCTGAAAACCAATTTTGTTCCGATGTTTCTACTTTCACTGATGATGGCTGCCGGTTAGTC 120
Query 552 CTCGGATTGGGTCCAACGTCGACTTCATACTGTTTTAGTGTCGGCGTTAATAACAGCAAC 611
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCGGATTAGGTCCAACGTCGGCTTCATACTGTTTTAGTGTCGGCGTTAATAACAGCAAC 180
Query 612 AAAGATTCTGCTTCTGGATTTACTC-A--A---GCTGATTCAGTTCTGCAACTTGGTCGT 665
|||||||||||||||||||| | || | | |||||||||||||||||||||||||||
Sbjct 181 AAAGATTCTGCTTCTGGATTCAGTCAAGTACTCGCTGATTCAGTTCTGCAACTTGGTCGT 240
Query 666 CCTGCTGTAAGCA-TAGAC-A-CTTTCAGTGGACTTGATAATGGTGGTGTGATCCCTGTT 722
|||||| | | | | | | | | | ||| | || || ||||||||||||||
Sbjct 241 CCTGCTCCCCG-AGTTG-CTATCAAT-AATGG--TGGACAA----CGTGTGATCCCTGTT 291
Query 723 GTTGATGAAGGTTCTTCTTCAGCTAAGAGATCAGGTGGATACATGCCATCGCTTTTGTTA 782
|||||||||||||||||||| || |||||||||||||||||||||||||| ||| |||||
Sbjct 292 GTTGATGAAGGTTCTTCTTCTGCAAAGAGATCAGGTGGATACATGCCATCACTTCTGTTA 351
Query 783 GATCCAAATGTTAAAAACCCTTCACAGATTCAACAACTTAAAGATTTTGGAACCGGTATC 842
||||||| ||||| ||||||||||||||| ||||||| |||||||||||||||||| |||
Sbjct 352 GATCCAACTGTTAGAAACCCTTCACAGATGCAACAACATAAAGATTTTGGAACCGGCATC 411
Query 843 CATTCACAAGTGAGCCAAGAACCATCACCTTACACAGAGTTCTATGTACAGCAGAGGACA 902
|||||||||||||||| |||||||||||| ||||||| ||| | |||||||||||||||
Sbjct 412 CATTCACAAGTGAGCCTAGAACCATCACCGTACACAGCGTTATCTGTACAGCAGAGGACT 471
Query 903 AGCAATCCGAGGAAGTGTAAATTTATGGGATGTGTGAAGGGAGCTCGAGGAGCGTCAGGA 962
|||||||||||||||||||||||||||||||||||||| ||||| ||||| | |||||
Sbjct 472 AGCAATCCGAGGAAGTGTAAATTTATGGGATGTGTGAAAGGAGCCCGAGGCTCATCAGGG 531
Query 963 CTCTGCATCAGCCATGGAGGAGGACAGAGATGCCAAAAACCAGGCTGCAACAAAGGTGCA 1022
|||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 532 CTCTGCATTAGCCATGGTGGAGGCCAGAGATGCCAAAAACCAGGCTGCAACAAAGGTGCA 591
Query 1023 GAGAGTAAAACCACTTTTTGTAAAACCCATGGTGGAGGGAAGAGGTGTGAACACTTGGGA 1082
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 592 GAGAGTAAAACCACTTTTTGCAAAACCCATGGTGGAGGGAAGAGATGTGAACACTTGGGA 651
Query 1083 TGCACGAAGAGCGCCGAAGGTAAAACAGATTTCTGTATATCTCATGGTGGTGGAAGACGT 1142
||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 652 TGCACGAAGAGTGCTGAAGGGAAAACAGATTTCTGCATATCTCATGGTGGTGGAAGACGT 711
Query 1143 TGCGAGTTCCTTGAAGGATGTGACAAAGCAGCCCGTGGCAGGTCGGGCCTCTGCATCAAA 1202
|| |||||||| |||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 712 TGTGAGTTCCTCGAAGGATGTGACAAAGCAGCCCGTGGCAAATCGGGCCTCTGCATTAAA 771
Query 1203 CACGGTGGTGGCAAAAGATGTAATATCG-AAGACTGTACACGAAGTGCTGAAGGACAAGC 1261
||||||||||||||||||||||| |||| ||| |||||| || |||||||||||||||||
Sbjct 772 CACGGTGGTGGCAAAAGATGTAACATCGAAAG-CTGTACGCGGAGTGCTGAAGGACAAGC 830
Query 1262 TGGTCTTTGTATATCCCATGGTGGTGGGAAACGTTGTCAGTATTTTTCAGGTTGTGAGAA 1321
||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 831 TGGTCTTTGCATATCCCATGGTGGTGGAAAACGTTGTCAGTTTTTTTCAGGTTGTGAGAA 890
Query 1322 AGGAGCTCAAGGAAGTACTAACTACTGCAAAGCCCATGGAGGTGGAAAACGCTGCATATT 1381
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 891 AGGAGCTCAAGGAAGTACAAACTACTGCAAAGCCCATGGAGGCGGAAAACGCTGCATATT 950
Query 1382 TTCAGGATGTAGCAAAGGAGCAGAAGGTAGTACTCCTCTGTGTAAAGCACACGGTGGTGG 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 TTCAGGATGTAGCAAAGGAGCAGAAGGTAGTACTCCTCTGTGTAAAGCACACGGTGGTGG 1010
Query 1442 AAAACGCTGTCTCGCTGATGGGGGTGGGATTTGCTCTAAAAGCGTACATGGTGGGACTAA 1501
||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1011 GAAACGCTGTCTGGCTGATGGAGGCGGGATTTGCTCTAAAAGCGTACATGGTGGGACTAA 1070
Query 1502 CTTCTGTGTTGCTCATGGTGGGGGGAAAAGATGTGTTGTGGTGGGGTGTACAAAGAGTGC 1561
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1071 CTTCTGTGTTGCTCATGGTGGTGGGAAAAGATGTGTTGTGGCGGGGTGTACAAAGAGTGC 1130
Query 1562 GCGTGGTCGCACTGACAGTTGTGTTAAACATGGTGGTGGGAAACGTTGCAAGATTATTGA 1621
|||||||||||||||| ||||||||||||| |||||||| ||||||||||||||| | ||
Sbjct 1131 GCGTGGTCGCACTGACTGTTGTGTTAAACACGGTGGTGGAAAACGTTGCAAGATTGTCGA 1190
Query 1622 TTGTGAGAAGAGTGCTCAAGGTAGTACTGATTTCTGTAAAGCTCACGGTGGTGGGAAACG 1681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1191 TTGTGAGAAGAGTGCTCAAGGTAGTACTGATTTCTGTAAAGCTCACGGTGGTGGGAAGCG 1250
Query 1682 ATGTTCTTGGGGAGATGGGAAATGTGAGAAATTTGCTAGAGGAAAGAGCGGTTTATGCGC 1741
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1251 ATGTTCTTGGGGAGAAGGGAAATGTGAGAAATTCGCTAGAGGAAAGAGCGGTTTATGCGC 1310
Query 1742 TGCGCATAACACTATTATGTCTCGGGAGAACAAAGATGGAAGCAAGAGCGGTTTGATTGG 1801
||| |||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||
Sbjct 1311 TGCACATAACACTATTATGTCTCGAGAGAACGAAGGTGGAAGCAAGAGCGGTTTGATTGG 1370
Query 1802 ACCGGGACTCTTTAGTGGCCTTGTTTTTGGCTCTACTTCTGATCATTCTCAGTCTGGAGC 1861
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 ACCGGGACTCTTTAGTGGCCTTGTTTTTGGCTCTACTTCTGATCATTCTCAGTCTGGAGT 1430
Query 1862 TAGCGCTGTCTCTGATTGTACTGATTCTGTTGAACGAATACAGTTTGAGAATAGGCAGAA 1921
|||||||||||||||||| || ||||||||||| |||| |||||||||||||||||||||
Sbjct 1431 TAGCGCTGTCTCTGATTGCACCGATTCTGTTGATCGAACACAGTTTGAGAATAGGCAGAA 1490
Query 1922 GAACAAGAAGATGATGATACCGATGCAGGTTCTAGTACCTTCATCAATGAAATCTCCAAG 1981
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 GAATAAGAAGATGATGATACCGATGCAGGTTCTAGTACCTTCATCAATGAAATCTCCAAG 1550
Query 1982 TAATTCACATGAAGGAGAAACAAACATCTATGACTTCATGGTTCCGGAGGAGAGAGTTCA 2041
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1551 TACTTCACATGAAGGAGAAACAAACATCTATGACTTCATGATTCCGGAGGAGAGAGTTCA 1610
Query 2042 CGGCGGTGGGCTAGTAATGTCTTTACTTGGTGGCTCCATTGATCGAAACTGAAAGCCATT 2101
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 CGGCGGAGGGCTAATAATGTCTTTACTTGGTGGCTCCATTGATCGAAACTGAAAGCCATT 1670
Query 2102 TATGGT 2107
||||||
Sbjct 1671 TATGGT 1676
> Ahg358659 jgi|Araly1|358659|fgenesh1_pg.C_scaffold_8002446
Length=3249
Score = 813 bits (440), Expect = 0.0
Identities = 780/940 (83%), Gaps = 40/940 (4%)
Strand=Plus/Plus
Query 903 AGCAATCCGAGGAAGTGTAAATTTATGGGATGTGTGAAGGGAGCTCGAGGAGCGTCAGGA 962
||||| |||| |||||| || ||||||||||||||||| |||||| ||||||| || ||
Sbjct 631 AGCAACCCGAAGAAGTGCAAGTTTATGGGATGTGTGAAAGGAGCTAGAGGAGCTTCGGGG 690
Query 963 CTCTGCATCAGCCATGGAGGAGGACAGAGATGCCAAAAACCAGGCTGCAACAAAGGTGCA 1022
|||||||| |||||||||| || |||||||||||||| | ||| ||||||||||||||
Sbjct 691 CTCTGCATTGGCCATGGAGGTGGCCAGAGATGCCAAAAGCTAGGTTGCAACAAAGGTGCT 750
Query 1023 GAGAGTAAAACCACTTTTTGTAAAACCCATGGTGGAGGGAAGAGGTGTGAACACTTGGGA 1082
||||| ||||| ||||| || ||| ||||||| ||||| ||||| || ||||||| |||
Sbjct 751 GAGAGCAAAACTACTTTCTGCAAAGCCCATGGCGGAGGAAAGAGATGCCAACACTTAGGA 810
Query 1083 TGCACGAAGAGCGCCGAAGGTAAAACAGATTTCTGTATATCTCATGGTGGTGGAAGAC-G 1141
|| || ||||| || ||||| ||||| ||| |||| ||||| |||||||||||||||| |
Sbjct 811 TGTACAAAGAGTGCGGAAGGAAAAACCGATCTCTGCATATCACATGGTGGTGGAAGACGG 870
Query 1142 T-TGCGAGTTCCTTGAAGGATGTGAC-AAAGCAGCCCGTGGCAGGT-CGGGCCTCTGCAT 1198
| || || |||| ||| ||||||| | || || || ||||||| | |||| ||||||||
Sbjct 871 TGTG-GA-TTCCCTGAGGGATGTG-CTAAGGCTGCACGTGGCAAATCCGGG-CTCTGCAT 926
Query 1199 CAAACACGGTGGTGGCAAAAGATGTAATATCG-AAGACTGTACACGAAGTGCTGAAGGAC 1257
||| || |||||||| ||||| |||| |||| ||| |||||||||||||||||| ||||
Sbjct 927 CAAGCATGGTGGTGGTAAAAGGTGTAGGATCGAAAG-CTGTACACGAAGTGCTGAGGGAC 985
Query 1258 AAGCTGGTCTTTGTATATCCCATGGTGGTGGGA-AACGTTGTCAGTATTTTTCAGGTTGT 1316
||||||| || ||||| ||||| |||||| ||| ||||||||| | |||||| |||
Sbjct 986 AAGCTGGACTCTGTATTTCCCACGGTGGT-GGACGGCGTTGTCAG---TCTTCAGGCTGT 1041
Query 1317 G-AGAAAGGAGCTCAAGGAAGTACTAACTACTGCAAAGCCCATGGAGGTGGAAAACGCTG 1375
| | ||||| |||||||||||||| |||||||||||||| ||||| ||||| ||||||||
Sbjct 1042 GCA-AAAGGTGCTCAAGGAAGTACAAACTACTGCAAAGCTCATGGTGGTGGGAAACGCTG 1100
Query 1376 CATATTTTCAGGATGTAGC-AAAGGAGCAGAAGGTAGTACTCCTCTGTGTAAAGCACACG 1434
||||||| | ||||||| | |||||||| |||||||||||||| |||||||||||||| |
Sbjct 1101 CATATTTGCGGGATGTA-CAAAAGGAGCGGAAGGTAGTACTCCGCTGTGTAAAGCACATG 1159
Query 1435 GTGGTGGAAAACGCTGTCTCG-CTGATGGGGGTGGGATTTGCT-CTAAAAGCGTACATGG 1492
|||| |||||||||||| | | |||||| ||||| ||||| | |||| || || |||||
Sbjct 1160 GTGGAGGAAAACGCTGTAT-GTTTGATGGTGGTGGTATTTG-TCCTAAGAGTGTGCATGG 1217
Query 1493 TGGGACTAACTTCTGTGTTGCTCATGGTGGGGGGAAAAGATGTGTTGTGGTGGGGTGTAC 1552
|||||| | |||||||| ||||| ||||| ||||| |||||||||||| ||||| ||
Sbjct 1218 TGGGACGAGTTTCTGTGTAGCTCACGGTGGTGGGAAGCGATGTGTTGTGGCCGGGTGCAC 1277
Query 1553 AAAGAGTGCGCGTGGTCGCACTGACAGTTGTGTTAAACATGGTGGTGGGAAACGTTGCAA 1612
|||||| || ||||| | ||||| ||||||| || || |||||||||||||| || ||
Sbjct 1278 AAAGAGCGCTCGTGGGAGGACTGATTGTTGTGTGAAGCACGGTGGTGGGAAACGGTGTAA 1337
Query 1613 GAT-T-ATTGATTGTGAGAAGAGTGCTCAAGGTAGTACTGATTTCTGTAAAGCTCACGGT 1670
| | | | || |||||| |||||||| |||||||| |||||||||||||| || ||||||
Sbjct 1338 G-TCTGA-TGGTTGTGAAAAGAGTGCGCAAGGTAGCACTGATTTCTGTAAGGCACACGGT 1395
Query 1671 GGTGGGAAACGATGTTC-T-TGG-GGAGATGGGAAATGTGAGAAATTTGCTAGAGGAAAG 1727
|||||||| || || || | || |||||| ||||||| |||||||| ||||||||||||
Sbjct 1396 GGTGGGAAGCGCTGCTCATGGGGAGGAGATTGGAAATGCGAGAAATTCGCTAGAGGAAAG 1455
Query 1728 AGCGGTTTATGCGCTGCGCATAACACTATTATGTCTCGGGAGAACAAAGATGGAAGCAAG 1787
||||||||||||||||||||||||| ||| ||| | ||| || | | |||||||||
Sbjct 1456 AGCGGTTTATGCGCTGCGCATAACAGTAT---GTCCCAGGATAA-A--GCTGGAAGCAA- 1508
Query 1788 AGC-GGTTTGATTGGACCGGGACTCTTTA-GTGGCCTTGT 1825
|| |||||||||||||||||||| ||| ||||||||||
Sbjct 1509 AGTTGGTTTGATTGGACCGGGACT-TTTCCGTGGCCTTGT 1547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86312495170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5