BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09680.1
Length=922
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487788 jgi|Araly1|487788|fgenesh2_kg.6__922__AT5G09680.2 950 0.0
> Ahg487788 jgi|Araly1|487788|fgenesh2_kg.6__922__AT5G09680.2
Length=1092
Score = 950 bits (514), Expect = 0.0
Identities = 626/677 (92%), Gaps = 20/677 (3%)
Strand=Plus/Plus
Query 118 AAGCTCAAGATGGA---TACTAGTAGA-GATGATGATTTCACATTCTCAAAGGTTTCACC 173
|||||||||||||| |||||| ||| ||||||||||||||||||||||| ||| | ||
Sbjct 394 AAGCTCAAGATGGATTCTACTAG-AGATGATGATGATTTCACATTCTCAAAAGTTGCGCC 452
Query 174 ACCAGATAGTGAA---G---TT------AAAGATCTTGCATCAGATGTAGGTAGTATTAC 221
||||||||||||| | || |||| |||||| |||||||| |||||||||||
Sbjct 453 ACCAGATAGTGAAGCTGTTCTTGAGGCAAAAGCTCTTGCGTCAGATGTGGGTAGTATTAC 512
Query 222 CCTTAAAGATGGGTTAGATCAACAAAAAAGCAATGGTCTTATTTGGAAAGACAAGTCTCT 281
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 513 CCTTAAAGATGGATTAGATCAAC---AAAGCAATGGTCTTATTTGGAAAGACAAGTCTCT 569
Query 282 TCCTCCAAAGGAAGAAACAATAGGTTCTTTGTCTTTCACGGTGACTGATTCTTCGTCTTC 341
|||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||
Sbjct 570 TCCTCCAAAGGAAGAAACAATAGGTTCTTTGTCTTTCAATGTGATTGATTCTTCATCTTT 629
Query 342 GAAAAAGCAATCCAATGAATCCTCTGAGACTTTCAAAACTCCAGCTAGAAAGCCTATCAC 401
||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 630 GAAAAAGCAGTCCAATGAATCATCTGAGACTTTCAAAACTCCTGCTAGAAAGCCTATCAC 689
Query 402 TCGTACCAAGGTTCCATTTGAAAAGGGTTATAGCCAAATGGATTGGTTGAAACTTACACG 461
||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 690 TCGTACCAAAGTTCCTTTTGAAAAAGGTTATAGCCAAATGGATTGGTTGAAACTTACACG 749
Query 462 AACACATCCCGATCTTGCAGGCCTGAAGGGAGAGTCAAACAAGAGGCTTATTCCAATGGA 521
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 750 AACACATCCCGATCTTGCAGGCTTGAAGGGAGAGTCAAATAAGAGGCTTATTCCAATGGA 809
Query 522 TGAAGTAAAGAAACACCGAACAGGAGATTCGATGTGGACTGTTTTGAAAGGTCGTGTATA 581
|||||| ||||| |||||| |||||||||| |||||||||||||||||||||||||| ||
Sbjct 810 TGAAGTGAAGAAGCACCGATCAGGAGATTCAATGTGGACTGTTTTGAAAGGTCGTGTGTA 869
Query 582 CAACATATCGCCTTATATGAATTTTCATCCTGGAGGTGTCGATATGCTGATGAAAGCGGT 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 870 CAACATATCGCCTTATATGAATTTTCATCCTGGAGGTGTCGATATGCTGATGAAAGCTGT 929
Query 642 TGGAAGAGACGGTACGCTCTTATTCAACAAATACCATGCCTGGGTCAATGTTGATATCTT 701
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 930 GGGAAGAGACGGTACGCTCTTATTCAACAAATACCATGCTTGGGTCAATGTTGATATGTT 989
Query 702 ACTTGAGAAATGCCTTGTTGGAGTTTTGGATGATACCAAAGTGAAGAAGCAAGAACCCTA 761
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 990 ACTTGAGAAATGCCTTGTTGGAGTTTTGGATGTTACCAAAGTGAAGAAGCAAGAAGCCTA 1049
Query 762 ATTGCTATTGCTAAAAG 778
|||||||||||||||||
Sbjct 1050 ATTGCTATTGCTAAAAG 1066
Score = 156 bits (84), Expect = 3e-37
Identities = 93/97 (96%), Gaps = 1/97 (1%)
Strand=Plus/Plus
Query 19 CAATTAGATCTCTCCCTCTTTCGTCGCTCTTTG-TTTTCTCCACTGGTCTTTGTTTCTCC 77
||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1 CAAATAGATCTCTCCCTCTTTCGTCGCTCTTTGTTTTTCTTCACTGGTCTTTGTTTCTCC 60
Query 78 TTTGATTCTCTGTCTGGAGCAGTCTCAGATCCACCAG 114
|| ||||||||||||||||||||||||||||||||||
Sbjct 61 TTCGATTCTCTGTCTGGAGCAGTCTCAGATCCACCAG 97
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34196256549
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5