BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09690.2
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487791 jgi|Araly1|487791|fgenesh2_kg.6__925__AT5G09690.1 2002 0.0
> Ahg487791 jgi|Araly1|487791|fgenesh2_kg.6__925__AT5G09690.1
Length=1474
Score = 2002 bits (1084), Expect = 0.0
Identities = 1255/1337 (94%), Gaps = 13/1337 (1%)
Strand=Plus/Plus
Query 88 GGCATTGGGTTTAAGCAGTGAAGAATCGGAGATGTCACCTGACGGAGAACTTGTTCCGGT 147
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 144 GGCATTGGGTTTAAGCAGTGAAGAATTGGAGATGTCACCTGACGGAAAACTTGTTCCGGT 203
Query 148 GGATTCATCGGCGGTAGTCACGGCGAAGAGGAAGACATCTCAGTTATCAAGGAGTTGGAT 207
||||||||||| ||||||| ||||||||||||||| | |||||||||| ||||||||||
Sbjct 204 GGATTCATCGGTGGTAGTCTCGGCGAAGAGGAAGATACCTCAGTTATCGCGGAGTTGGAT 263
Query 208 TTCCATAGACGCCACGGGGCAAAAAACTGTGCTTGACGTTGACAAACACGTGATTATGCA 267
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 TTCCATAGACGCGTCAGGGCAAAAAACTGTGCTTGACGTTGACAAACACGTGATTATGCA 323
Query 268 CCGTGTTCAAATCCACGCTCGTGATCTCCGGATCCTTGACCCGAATCTATTTTACCCTTC 327
|||||||| ||||||||||||||||| ||||||||||| || |||||||||||||| ||
Sbjct 324 TCGTGTTCAGATCCACGCTCGTGATCTTCGGATCCTTGATCCAAATCTATTTTACCCATC 383
Query 328 TGCTATTTTGGGTCGAGAAAGAGCCATTGTTCTTAACTTAGAGCATATCAAGGCGATTAT 387
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 384 TGCTATTCTGGGTCGAGAAAGAGCCATTGTTCTTAACTTAGAGCATATTAAGGCGATTAT 443
Query 388 CACTGCCGAAGAGGTTTTGATCCGAGATTCGTCAGATGAAAATGTTATCCCCGTCCTGGA 447
||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||
Sbjct 444 CACTGCCGAAGAGGTTTTGATTCGGGATTCTTCAGATGAAAATGTTATTCCCGTCCTGGA 503
Query 448 GGAGTTTCAGAGAAGATTACCTGTAGGAAACGAGGCACATGGTGTTCACGGAGATGGTGA 507
|||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||
Sbjct 504 GGAGTTTCAGAGAAGATTGCCTGTAGGGAACGAGGCACATGGTGGTCACGGAGATGGTGA 563
Query 508 TTTGGGTGAAGAAGATGAATCCCCGTTTGAATTCCGGGCGCTAGAGGTGGCCTTGGAAGC 567
| ||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 564 TGTGGGTGAAGAAGATGAATCCCCGTTTGAATTTCGGGCGCTAGAGGTGGCTTTAGAAGC 623
Query 568 TATTTGTAGTTTTCTAGCTGCAAGGACAACAGAACTAGAGAAGTTTGCTTATCCTGCTTT 627
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 624 TATTTGTAGTTTCCTAGCTGCAAGGACAACAGAACTAGAGAAGTCTGCTTATCCTGCTTT 683
Query 628 GGATGAACTTACCTTGAAGATAAGTAGCCGTAACTTGGAAAGAGTTCGTAAATTGAAGAG 687
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 684 GGATGAACTTACATTGAAGATAAGTAGCCGTAACTTGGAAAGGGTTCGTAAATTGAAGAG 743
Query 688 TGCCATGACCCGTTTGACAGCTCGGGTCCAAAAGGTAAGGGATGAGCTTGAACAGTTGTT 747
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 TGCCATGACCCGATTGACAGCTCGGGTCCAAAAGGTAAGGGATGAGCTTGAACAGTTGTT 803
Query 748 GGATGATGATGGTGATATGGCTGATCTCTACCTTACAAGGAAGCTTGTTGGTGCATCTTC 807
||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 804 GGATGATGACGGTGATATGGCTGATCTCTTCCTTACAAGGAAATTTGTTGGTGCATCTTC 863
Query 808 ATCTG-TCAGCGTTTCAGATGAACCCATTTGGTATCCTACTTCCCCAACAATAGGTTCTA 866
||| | ||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 864 ATC-GATCAGCGTTTCAGATGAACCTATTTGGTATCCTACGTCCCCAACAATAGGTTCTA 922
Query 867 TGATTTCCAGAGCAAGTAGAGTGAGTTTAGTCACGGTTCGTGGAGACGACGAAACTGATG 926
||||||||||||||||||||| ||||||| |||||||||||| ||||| |||| |||||
Sbjct 923 AGATTTCCAGAGCAAGTAGAGTAAGTTTAGGCACGGTTCGTGGGGACGATGAAAATGATG 982
Query 927 TTGAAGAGCTTGAAATGTTGCTTGAGGCATACTTCATGCAAATAGACAGCACTTTGAACA 986
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 983 TTGAAGAGCTTGAGATGTTGCTTGAGGCATACTTCATGCAAATCGACAGCACTTTGAACA 1042
Query 987 AATTAACCGAGCTACGCGAGTATATTGATGACACAGAGGATTACATTAACATCCAGTTAG 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 AATTAACCGAGCTACGCGAGTATATTGATGACACAGAGGATTACATTAACATCCAGTTAG 1102
Query 1047 ACAATCATCGAAATCAGCTGATTCAGTTAGAGCTAATGTTAAGCGCAGGAACCGTCTGTG 1106
|||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||
Sbjct 1103 ACAATCATCGAAATCAGCTGATTCAGTTAGAGCTAATGTTAAGCTCTGGAACCGTGTGTG 1162
Query 1107 TATCAGTGTACTCTATGATCGCCGGAATATTCGGCATGAACATTCCCAACACATGGAACC 1166
||||| ||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1163 TATCAATGTACTCAATGGTCGCCGGAATATTCGGCATGAACCTTCCCTACACATGGAACC 1222
Query 1167 ACGACCATGGTTACATTTTCAAATGGGTCGTAAGTCTCACGGGAACATTTTGCATAGTCT 1226
|||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1223 ACGACCATGGATACATTTTCAAATGGGTGGTAAGTCTCACGGGAACATTTTGCGCAGTCT 1282
Query 1227 TGTTCGTGATTATACTGTCGTACGCTCGGTTTAGAGGACTCATCGGATCTTAATGACAAG 1286
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1283 TGTTCGTGATTATACTGTCGTACGCTCGGTTTAGAGGCCTCATCGGATCTTAATGACAAG 1342
Query 1287 AGA-G-GA---CAATTTGGTACATATTTTATAGCAGAGAATGTGAGAGCAGATCTTGTTT 1341
||| | || ||||| |||||| |||| ||| || ||||||||||||||||||||||||
Sbjct 1343 AGAAGAGAGGACAATT-GGTACAGATTT-ATAACAAAGAATGTGAGAGCAGATCTTGTTT 1400
Query 1342 TTTGGGGTC-TCTTCTCGCCAGCATTTTCGTTACTAAGTGATGGGATTGCATAATTTGTA 1400
|| |||| | |||||||||||||| ||||||||||| |||||||||||| || ||||||
Sbjct 1401 TTGGGGGGCCTCTTCTCGCCAGCAATTTCGTTACTA-GTGATGGGATTGTAT--TTTGTA 1457
Query 1401 CTGTGTGACTACAtttt 1417
|||||||||||||||||
Sbjct 1458 CTGTGTGACTACATTTT 1474
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54430960105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5