BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09730.1
Length=2430
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325518 jgi|Araly1|325518|fgenesh1_pm.C_scaffold_6000738 3009 0.0
Ahg496670 jgi|Araly1|496670|fgenesh2_kg.8__2486__AT5G64570.1 1400 0.0
> Ahg325518 jgi|Araly1|325518|fgenesh1_pm.C_scaffold_6000738
Length=2343
Score = 3009 bits (1629), Expect = 0.0
Identities = 2099/2325 (90%), Gaps = 35/2325 (2%)
Strand=Plus/Plus
Query 46 CGAAACAGAGCACTCTTCTCTGTTTCCACTCTTTTCCTCTGTTTCATCGTCTGCATCTCC 105
|||||||||||||||||||||||||| |||||| ||||||||||| || |||||||||||
Sbjct 25 CGAAACAGAGCACTCTTCTCTGTTTCTACTCTTCTCCTCTGTTTCCTCCTCTGCATCTCC 84
Query 106 GAGCAATCGAACAATCAGTCTTCTCCAGTCTTCGCCTGTGACGTCACCGGAAACCCTTCT 165
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 85 GAGCAATCGAACGCTCAGTCTTCTCCAGTCTTCGCCTGTGACGTCACCGGAAACCCTTCT 144
Query 166 CTTGCCGGGCTTAGATTCTGCAACGCGGGGTTGAGTATCAAAGCCCGAGTCACCGATCTT 225
||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||
Sbjct 145 CTTGCCGGGCTTAGATTCTGCAATACGGGGTTGAATATCAAATCCCGAGTCACCGATCTT 204
Query 226 GTCGGAAGATTGACGTTGGAGGAGAAAATCGGGTTTTTGACCAGCAAAGCTATCGGCGTT 285
|| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 205 GTTGGAAGATTGACGTTGGAGGAGAAAATCGGGTTTTTGGGAAGCAACGCTATCGGCGTT 264
Query 286 AGCCGCCTTGGGATTCCGTCTTACAAATGGTGGTCGGAGGCACTTCATGGCGTCTCTAAC 345
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 265 AGCCGCCTTGGGATTCCGGCTTACAAATGGTGGTCGGAGGCACTTCATGGCGTCTCTAAC 324
Query 346 GTCGGAGGTGGTAGTCGGTTCACCGGTCAAGTCCCTGGCGCCACTAGCTTCCCACAAGTT 405
||||||||||||||| | ||| |||| |||||||||||||||||||||||||||||||||
Sbjct 325 GTCGGAGGTGGTAGTAGTTTCTCCGGGCAAGTCCCTGGCGCCACTAGCTTCCCACAAGTT 384
Query 406 ATACTCACGGCCGCTTCTTTCAATGTGTCTTTGTTCCAAGCCATTGGCAAGGTTGTATCG 465
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 ATACTCACGGCAGCTTCTTTCAATGTGTCTTTGTTCCAAGCCATTGGCAAGGTTGTATCG 444
Query 466 ACAGAGGCGAGGGCAATGTACAATGTGGGATCAGCCGGTTTAACGTTTTGGTCACCTAAT 525
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 445 ACGGAGGCGAGGGCAATGTACAATGTGGGATCAGCCGGTTTAACGTTTTGGTCACCGAAT 504
Query 526 GTGAACATATTCCGGGACCCGAGATGGGGAAGAGGACAAGAGACTCCCGGTGAGGACCCA 585
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 505 GTGAACATATTCCGGGACCCGAGATGGGGAAGAGGACAAGAGACCCCCGGCGAGGACCCA 564
Query 586 -ACACTCTCAAGCAAATACGCAGTGGCCTACGTTAAAGGTCTTCAGGAGACTGACGGTGG 644
| |||||||||||||||||| ||||| || |||| ||||||||||||||||||||||||
Sbjct 565 GA-ACTCTCAAGCAAATACGCGGTGGCTTATGTTAGAGGTCTTCAGGAGACTGACGGTGG 623
Query 645 AGATCCTAACCGTCTCAAAGTCGCTGCTTGCTGCAAACACTACACCGCCTATGATATTGA 704
||| ||||||| || |||||||| ||||||||||||||||||||||| |||||| ||||
Sbjct 624 CGATTCTAACCGCCTAAAAGTCGCCGCTTGCTGCAAACACTACACCGCATATGATGTTGA 683
Query 705 CAATTGGAGAA-ATGTCAATCGTCTCACTTTCAACGCTGTGGTAAACCAACAAGATCTGG 763
|||||||| || | ||| ||||| ||||||||||||| |||||||||||||||||| |||
Sbjct 684 CAATTGGA-AAGACGTCCATCGTTTCACTTTCAACGCCGTGGTAAACCAACAAGATATGG 742
Query 764 CTGATACGTTTCAACCACCGTTCAAGAGCTGTGTGGTTGATGGGCATGTTGCTAGTGTCA 823
|||||||| |||||||||||||||||||||||||||||||||| |||| || ||||| |
Sbjct 743 ATGATACGTATCAACCACCGTTCAAGAGCTGTGTGGTTGATGGGAATGTAGCGAGTGTTA 802
Query 824 TGTGTTCTTACAACCAAGTTAACGGTAAACCAACATGTGCCGATCCTGATCTGCTTTCCG 883
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 803 TGTGTTCTTACAACCAAGTTAACGGAAAACCGACATGTGCTGATCCTGATCTGCTTTCCG 862
Query 884 GTGTGATCCGCGGACAATGGCAGCTCAACGGATACATTGTTTCGGATTGTGATTCGGTAG 943
| |||||||||||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct 863 GCGTGATCCGCGGACAATGGAAGTTAAACGGATACATTGTTTCGGATTGTGATTCGGTAG 922
Query 944 ATGTGTTGTTCAGAAAACAACACTATGCTAAGACTCCAGAAGAAGCTGTGGCCAAATCTC 1003
||||||||| || ||||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 923 ATGTGTTGTACACAAAACAACACTATACCAAGACTCCAGAGGAAGCTGTGGCCAAATCTA 982
Query 1004 TATTGGCAGGTTTGGATTTGAATTGTGATCATTTCAATGGTCAACACGCGATGGGAGCGG 1063
|||| ||||||||||||||||||||||||||||||| |||||| |||| ||| |||||
Sbjct 983 TATTAGCAGGTTTGGATTTGAATTGTGATCATTTCACGGGTCAATACGCAATGAAAGCGG 1042
Query 1064 TCAAGGCGGGTTTGGTAAACGAAACAGCTATTGACAAAGCGATTTCAAACAATTTCGCGA 1123
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 TCAAGGTGGGTTTGGTAAATGAAACAGCTATTGACAAAGCGATTTCAAACAATTTCGCGA 1102
Query 1124 CTCTGATGCGTTTAGGGTTCTTCGATGGAGACCCTAAGAAGCAGC---TCTACGGTGGTC 1180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1103 CTCTGATGCGTTTAGGGTTCTTCGATGGAGACCCTAAGAAGCAGCAGCTCTACGGTGGTC 1162
Query 1181 TTGGTCCTAAGGATGTTTGCACCGCTGATAACCAAGAACTCGCAAGAGATGGCGCAAGAC 1240
|||||||||| || |||||||||||| |||||||||||||||| ||||||| ||||||||
Sbjct 1163 TTGGTCCTAATGACGTTTGCACCGCTAATAACCAAGAACTCGCTAGAGATGCCGCAAGAC 1222
Query 1241 AAGGCATTGTCTTGCTTAAGAACTCTGCTGGTTCGCTTCCGCTCTCACCTTCCGCAATCA 1300
||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||
Sbjct 1223 AAGGCGTTGTCTTGCTTAAGAACTCTGATGGCTCGCTTCCGCTCTCACCTTCCGCCATCA 1282
Query 1301 AAACATTAGCCGTGATCGGACCAAACGCCAATGCCACAGAAACAATGATCGGAAACTACC 1360
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1283 AAACATTAGCCGTGATCGGACCAAACGCCAACGCCACAGAAACAATGATCGGGAACTACA 1342
Query 1361 ACGGTGTACCATGCAAGTACACAACGCCGCTTCAGGGATTGGCAGAAACGGTGTCGTCTA 1420
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1343 ACGGTATACCATGCAAGTACACAACGCCGCTTCAGGGACTGGCAGAAACGGTGTCGTCTA 1402
Query 1421 CCTATCAACTGGGATGTAACGTGGCTTGCGTAGATGCGGATATAGGCTCAGCCG-TGGAT 1479
||||||| ||||| || ||||| || |||| ||| | ||| |||||||||||| || |
Sbjct 1403 CCTATCAGCTGGGCTGCAACGTCGCATGCGCAGAACCTGATTTAGGCTCAGCCGCTGC-T 1461
Query 1480 CTGGCTGCTTCTGCGGATGCTGTTGTGCTCGTGGTGGGCGCAGACCAATCAATTGAG-AG 1538
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1462 CTGGCTGCTTCTGCGGATGCTGTTGTGCTCGTGATGGGCGCAGACCAATCAATTGAGCAG 1521
Query 1539 GGAGGGCCATGACCGAGTCGACCTGTATCTTCCTGGAAAGCAGCAAGAGCTTGTGACTCG 1598
| || || ||||||| ||||||||||||| || ||||| || ||||||||||||||||
Sbjct 1522 G-AGAACCTTGACCGACTCGACCTGTATCTGCCCGGAAAACAACAAGAGCTTGTGACTC- 1579
Query 1599 AGTTG-CTATGGCAGC-AAGAGGACCGGTGGTGCTAGTTATCATGTCCGGTGGAG-GATT 1655
|| || ||| || || || ||||||||||||||||||||| ||||||||||||| | ||
Sbjct 1580 AGGTGGCTAAGGTGGCGAA-AGGACCGGTGGTGCTAGTTATAATGTCCGGTGGAGCG-TT 1637
Query 1656 TGACATTACATTCGCCAAGAATGATA-AAAAGATCACAAGCATAATGTGGGTCGGATACC 1714
||||||||||||||||||||| || | ||||||||||| |||| |||||||||||||| |
Sbjct 1638 TGACATTACATTCGCCAAGAACGA-AGAAAAGATCACAGGCATTATGTGGGTCGGATATC 1696
Query 1715 CTGGTGAAGCCGGTGGTCTCGCCATTGCTGACGTTATCTTCGGACGTCATAATCCGAGTG 1774
||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| || |
Sbjct 1697 CTGGTGAAGCCGGCGGTCTCGCCATTGCTGACGTCATCTTCGGTCGTCATAATCCAAGCG 1756
Query 1775 GAAATTTGCCGATGACGTGGTATCCTCAATCGTACGTGGAAAAAGTTCCGATGTCAAATA 1834
| |||||||||||||| |||||||||||||| || ||||| |||||||||||| | ||||
Sbjct 1757 GGAATTTGCCGATGACTTGGTATCCTCAATCATATGTGGAGAAAGTTCCGATGACGAATA 1816
Query 1835 TGAACATGAGACCCGACAAATCAAAGGGGTATCCGGGTCGGAGTTACAGGTTTTACACCG 1894
|||||||||||||| | |||||||| |||||||||||||||| |||||| || |||||||
Sbjct 1817 TGAACATGAGACCCAATAAATCAAACGGGTATCCGGGTCGGACTTACAGATTCTACACCG 1876
Query 1895 GAGAAACCGTATACGCCTTCGCAGACGCGCTTACCTACACTAAATTC-GACCATCAGCTA 1953
||||||||||||||||||||| ||| | ||| | |||||||| ||| | | | ||| |
Sbjct 1877 GAGAAACCGTATACGCCTTCGGAGATGGGCTCAGTTACACTAATTTCAGTC-ACCAGATT 1935
Query 1954 ATCAAAGCGCC-AAGACTCGTCTCTCTC-AGTCTCGACGAGAACCACCCTTGCCGATCAT 2011
| ||||| || ||| || ||||||||| | ||| ||||| |||||| |||||||||| |
Sbjct 1936 CTTAAAGCTCCGAAG-CTAGTCTCTCTCGA-TCTTGACGAAAACCACGCTTGCCGATCGT 1993
Query 2012 CGGAGTGCCAATCTTTGGACGCGATCGGACCTCACTGCGAGAACGCCGTTG-AGGGAGGA 2070
|||| |||||||| |||||||||||||||| |||||||| |||||||| | ||| ||||
Sbjct 1994 CGGAATGCCAATCGGTGGACGCGATCGGACCGCACTGCGATAACGCCGTCGGAGG-AGGA 2052
Query 2071 TCGGATTTCGAGGTTCATTTGAATGTAAAGAACACCGGAGACAGAGC-GGGAAGCCACAC 2129
| ||||||||||||| ||||| |||| |||| ||||||||||| |||| |||||||
Sbjct 2053 TTAAATTTCGAGGTTCAATTGAAGGTAAGGAACGTCGGAGACAGAGAAGGGA-GCCACAC 2111
Query 2130 GGTGTTTCTGTTCACGACGTCGCCGCAAGTACACGGATCTCCGATTAAGCAACTACTAGG 2189
||||||||||||||||||| ||||| ||||||||||||| |||| ||||| || |||||
Sbjct 2112 GGTGTTTCTGTTCACGACGCCGCCGGAAGTACACGGATCGCCGAGGAAGCATCTTCTAGG 2171
Query 2190 ATTTGAGAAGATTCGTCT-GG-GAAAGAGTGAAGA-AGCGGTGGTTAGGTTTAACGTCAA 2246
|| |||||||||||| | || |||| || ||||| | ||||| |||||||||||||| |
Sbjct 2172 GTTCGAGAAGATTCGTTTAGGAGAAA-AG-GAAGAGA-CGGTGATTAGGTTTAACGTCGA 2228
Query 2247 TGTGTGTAAGGATCTGAGTGTGGTTGATGAGACCGGGAAGAGGAAAATCGCGTTAGGTCA 2306
||||||||||||||||||||||||||| |||| ||| || |||||||||||||| |||||
Sbjct 2229 TGTGTGTAAGGATCTGAGTGTGGTTGACGAGATCGGAAAAAGGAAAATCGCGTTGGGTCA 2288
Query 2307 TCATCTTCTCCATGTAGGAAGCTTGAAACACTCTTTGAACATTAG 2351
| |||| ||||| || || || || ||||| || |||| ||||||
Sbjct 2289 TTATCTGCTCCACGTGGGTAGTTTTAAACATTCATTGACCATTAG 2333
> Ahg496670 jgi|Araly1|496670|fgenesh2_kg.8__2486__AT5G64570.1
Length=2485
Score = 1400 bits (758), Expect = 0.0
Identities = 1811/2306 (79%), Gaps = 125/2306 (5%)
Strand=Plus/Plus
Query 120 TCAGTCTTCTCCAGTCTTCGCCTGTGACGTCA-CCGGAAACCCTTCTCTTGCCGGGC-T- 176
||| || || || || |||||||| ||||| | | | |||||||||||| | | || |
Sbjct 140 TCAATCATCGCCGGTTTTCGCCTGCGACGT-AGCTGCAAACCCTTCTCTCG-C-TGCATA 196
Query 177 TAGATTCTGCAACGCGGGGTTG-AGTATCAAAGCCCGAGTCACCGATCTTGTCG-GAAGA 234
| ||||||||||| | | ||| || ||| || ||||||| | ||||| |||| || |
Sbjct 197 TGGATTCTGCAACACCGTTTTGAAG-ATCGAATACCGAGTCGCTGATCTGGTCGCGAGGC 255
Query 235 TTGACGTTGGAGGAGAAA-ATCGGGTTTTTGA-CCAGCAAAGCTATCGGCGTTAGC-CGC 291
|| |||||| | || ||| || |||||||| | || ||||||| |||||| | | ||
Sbjct 256 TT-ACGTTGCAAGA-AAAGATTGGGTTTTT-AGTGAGTAAAGCTAACGGCGTGA-CTCGG 311
Query 292 CTTGGGATTCCGTCTTACAAATGGTGGTCGGAGGCACTTCATGGCGTCTCTAACGTCGGA 351
|||||||||||| | || ||||||||||||| ||||| || ||||| ||| || |||||
Sbjct 312 CTTGGGATTCCGACGTATGAATGGTGGTCGGAAGCACTCCACGGCGTTTCTTACATCGGA 371
Query 352 GGTGGTA-GTCGGTTCACCGGTCAAG-TCCCTGGCGCCACTAGCTTCCCACAAGTTATAC 409
|| | | | || || | |||| |||| || || || || ||||| || |||||||
Sbjct 372 CCCGGCACG-CATTTTTCCAGCCAAGTTCCC-GGAGCTACGAGTTTCCCGCAGGTTATAC 429
Query 410 TCACGGCCGCTTCTTTCAATGTGTCTTTGTTCCAAGCCATTGGCAAGGTTGTATCGACAG 469
|||| |||||||||||||| || ||| |||| ||||||||||||||||| || ||||| |
Sbjct 430 TCACCGCCGCTTCTTTCAACGTATCTCTGTTTCAAGCCATTGGCAAGGTCGTCTCGACGG 489
Query 470 AGGCGAGGGCAATGTACAATGTGGGATCAGCCGGTTTAACGTTTTGGTCACCTAATGTGA 529
| ||||||||||||||||| ||||||| |||||| |||||| ||||||||| || ||||
Sbjct 490 AAGCGAGGGCAATGTACAACGTGGGATTAGCCGGACTAACGTATTGGTCACCGAACGTGA 549
Query 530 ACATATTCCGGGACCCGAGATGGGGAAGAGGACAAGAGACTCCCGGTGAGGACCCAACAC 589
|||||||||| || || |||||||||||||||||||||||||| || || || ||| |
Sbjct 550 ACATATTCCGAGATCCAAGATGGGGAAGAGGACAAGAGACTCCAGGAGAAGATCCATTGC 609
Query 590 TCTCAAGCAA--ATAC-GCAGTGGCCTACGTTAAAGGTCTTCAGGAGACTGACGGTGGAG 646
|| | ||||| || | ||| || |||||||| ||||| || |||||||||| ||| |
Sbjct 610 TCGCTAGCAAGTATGCTTCAG-GG--TACGTTAAGGGTCTCCAAGAGACTGACGCTGGCG 666
Query 647 ATCCTAACCGTCTCAAAGTCGCTGCTTGCTGCAAACACTACACCGCCTATGATATTGACA 706
|| ||||||| || |||||||| ||||||||||||||||||||||| || || | || |
Sbjct 667 ATTCTAACCGCCTAAAAGTCGCCGCTTGCTGCAAACACTACACCGCTTACGACGTCGATA 726
Query 707 ATTGGAGAA--ATGTCA-ATCGTCT-CACTTTCAACGCTGTGGTAAAC-CAACAAGATCT 761
|||||| || | || | | ||| | || ||||||||| ||||| || ||||||||| |
Sbjct 727 ATTGGA-AAGGA-GT-AGAACGT-TACAGTTTCAACGCCGTGGT-GACTCAACAAGATAT 781
Query 762 GGCTGATACGTTTCAACCACCGTTCAAGAGCTGTGTGGTTGATGGGCATGTTGCTAGTGT 821
|| |||||||| |||||||||||||||||||||||||||||||||| |||| || |||||
Sbjct 782 GGATGATACGTATCAACCACCGTTCAAGAGCTGTGTGGTTGATGGGAATGTAGCGAGTGT 841
Query 822 CATGTGTTCTTACAACCAAGTTAACGGTAAACCAACATGTGCCGATCCTGATCTGCTTTC 881
|||||||||||||| ||||||||||| ||||| ||||| || ||||| |||||||| ||
Sbjct 842 TATGTGTTCTTACAATCAAGTTAACGGCAAACCGACATGCGCTGATCCGGATCTGCTCTC 901
Query 882 CGGTGTGATCCGCGGACAATGGCAGCTCAACGGATACATTGTTTCGGATTGTGATTCGGT 941
||||| |||||||| ||||| | | || || ||||||||||| ||||||||||| ||
Sbjct 902 TGGTGTTATCCGCGGTGAATGGAAATTAAATGGGTACATTGTTTCAGATTGTGATTCAGT 961
Query 942 AGATGTGTTGT-TCAGAAAACAACACTATGCTAAGACTCCAGAAGAAGCTGTGGCCAAAT 1000
||||||||||| | |||| ||||||||| | |||||||||| |||||||| |||| ||
Sbjct 962 AGATGTGTTGTATAAGAAC-CAACACTATACCAAGACTCCAGCAGAAGCTGCAGCCATAT 1020
Query 1001 CTCTATTGGCAGGTTTGGATTTGAATTGTGAT-CATTTCAATGG-TCAACACGC-GATGG 1057
|| ||||||||||||||||||| || || | | | || | ||| |||||| | || ||
Sbjct 1021 CTATATTGGCAGGTTTGGATTTAAACTGCGGTTCGTT-CT-TGGGTCAACATACAGA-GG 1077
Query 1058 GAGCGGTCAAGGCGGGTTTGGTAAACGAAACAGCTATTGACAAAGCGATTTCAAACAA-T 1116
|||||| ||| |||||||||||||||| ||||||| || ||||||||||| ||||| |
Sbjct 1078 AAGCGGTTAAGTCGGGTTTGGTAAACGAGGCAGCTATCGATAAAGCGATTTCGAACAACT 1137
Query 1117 TTCGCGACTCTGATGCGTTTAGGGTTCTTCGATGG-AGACCCTAAGAAGCAGCTCTACGG 1175
|| ||| || ||||||||||| ||||||||||| | | || ||||| ||| |||| ||
Sbjct 1138 TTTT-GACCCTTATGCGTTTAGGATTCTTCGATGGTA-ATCCAAAGAACCAGATCTATGG 1195
Query 1176 TGGTCTTGG-TCCTA-AGGATGTTTGCACCG-CTGATAACCAAGAACTCGCAAG-AGATG 1231
||| |||| ||||| || | |||||||| | ||| || |||||||| || | ||| |
Sbjct 1196 TGGG-TTGGGTCCTACAG-ACGTTTGCAC-GTCTGCGAATCAAGAACTAGCG-GCAGACG 1251
Query 1232 GCG-CAAGACAAGGCATTGT-CTTGCTTAAGAACTCTGCTGGTTCGCTT-CCGCTCTCAC 1288
|| |||||||||||||||| || || ||||| | |||| | |||| ||||| || |
Sbjct 1252 -CGGCAAGACAAGGCATTGTTCTA-CTCAAGAA-TA--CTGGAT-GCTTACCGCTATCTC 1305
Query 1289 CTTCCGCAATCAAAACATTAGCCGTGATCGGACCAAACGCCAATGCCACAGAA-ACAATG 1347
|| | ||||||||| |||||||||| ||||| ||||| |||| ||| || ||||||
Sbjct 1306 CTAAATCGATCAAAACACTAGCCGTGATTGGACCGAACGCGAATGTCACC-AAGACAATG 1364
Query 1348 ATCGGAAACTACCACGGTGTACCATGCAAGTACACAACGCCGCTTCAGGGATTGGCAGAA 1407
||||| |||||| | ||| || || || |||||||| || || || ||||| || |
Sbjct 1365 ATCGGGAACTACGAAGGTACGCCGTGTAAATACACAACACCACTACAAGGATTAGCTGGG 1424
Query 1408 ACGGTGTCGTCTACCTATCAACTGGGATG-T--AACGTGGCTTGCGTAGAT-GCGGATAT 1463
||||| || | || |||| || || || | || || ||||| | | | |||||| |
Sbjct 1425 ACGGTATCAACAACATATCTACCAGGCTGCTCCAATGTAGCTTGT-TCGGTAGCGGATGT 1483
Query 1464 AGGCTCAGCCGTGGATCTGGCTGCTTCTGCGGATGCTGTT-GTGCTCGTGG-TGGGCGCA 1521
|| | ||| | || || || | || |||| || ||||| || | | || ||
Sbjct 1484 AGCCGGTGCCACAAAACTAGCCGCAACAGCAGATG-TGACAGTGCT-GTTGATCGGTGCC 1541
Query 1522 GACCAATCAATTGAGAGG-GAGGGCC-ATGACCGAGTCGACCTGTATCTTCCTGGAAAGC 1579
|| |||||||| ||| | ||| ||| | ||| ||||||||||| ||||||| ||| |||
Sbjct 1542 GATCAATCAATCGAG-GCAGAGAGCCGA-GACAGAGTCGACCTGAATCTTCCCGGACAGC 1599
Query 1580 AGCAAGAGCTTGTGACTCGA-GTTGCTATGGCAGCAAGAGGACCGGTGGTGCTAGTTATC 1638
| |||||||| |||| || | || |||| ||||||| ||||||||| |||| || ||
Sbjct 1600 AACAAGAGCTAGTGA-TCCAAGTGGCTAAAGCAGCAAAAGGACCGGTCTTGCTCGTCATT 1658
Query 1639 ATGTCCGGTGGAGGATTT-GACATTACATTCGCCAAGAATGATAAAAAGATCACAAGCAT 1697
|||||||||||||| ||| |||||||||||||| |||||||| ||||||| | | ||
Sbjct 1659 ATGTCCGGTGGAGG-TTTCGACATTACATTCGCTAAGAATGACCCAAAGATCGCCGGAAT 1717
Query 1698 AATGTGGGTCGGATA-CCCTGGTGAAGCCGGTGGTCTCGCCATTGCTGACGTTATCTTCG 1756
||||||| || || ||| || |||||||||||| ||||||||||||| | ||||| |
Sbjct 1718 TTTGTGGGTTGGTTATCCC-GGAGAAGCCGGTGGTATCGCCATTGCTGATATCATCTTTG 1776
Query 1757 GACGTCATAATCCGAGTGGAA-ATTTGCCGATGACGTGGTATCCTCAATCGTACGTGGAA 1815
| ||| ||| ||| ||||||| ||| |||||||| |||||||| || ||||| || ||
Sbjct 1777 GCCGTTATAGTCCAAGTGGAAGATTA-CCGATGACTTGGTATCCACAGTCGTATGTAGAG 1835
Query 1816 AAAGTTCCGATGTCAAATATGAACATGAGACCCGACAAATCAAAGGGGTATCCGGGTCGG 1875
|||||||||||| ||| |||||||||||||||| | |||||||| |||||||||||||||
Sbjct 1836 AAAGTTCCGATGACAATTATGAACATGAGACCCAATAAATCAAACGGGTATCCGGGTCGG 1895
Query 1876 AGTTACAGGTTTTACACCGGAGAAACCGTATACGCCTTCGCAGACGCG-CTTACCTACAC 1934
| |||||| || |||||||||||||| || |||||||||| ||| | | || | ||||||
Sbjct 1896 ACTTACAGATTCTACACCGGAGAAACAGTTTACGCCTTCGGAGATG-GACTCAGCTACAC 1954
Query 1935 TAAATTC-GACCATCAGCTAA-TCAAAGCGCCAAGACTCGTCTCTCTCAGTCTCGACGAG 1992
| |||| | | || |||| | ||||||| ||||| ||||| ||||||||||| || |||
Sbjct 1955 CACATTCAGTC-AT-AGCTTAGTCAAAGCTCCAAGTCTCGTTTCTCTCAGTCTTGAAGAG 2012
Query 1993 AACCACCCTTGCCGATCATCGGAGTGCCAATCTTTGGACGCGATCGGACCTCACTGCGAG 2052
|| ||| ||||||||||||||| || ||||| ||||||| |||||||| ||||||||
Sbjct 2013 AATCACGTTTGCCGATCATCGGAATGTCAATCGCTGGACGCAATCGGACCGCACTGCGAA 2072
Query 2053 AACGCCGT-T-GAG-GGAGGATC-G-GATTTCGAGGTTCAT-TTGAATGTAAAGAACACC 2106
||||| || | | | |||||||| | | ||| |||||||| || || ||| ||| ||
Sbjct 2073 AACGCTGTCTCGGGCGGAGGATCTGCG-TTT-GAGGTTCAGATT-AAGGTAC-GAA-ACG 2127
Query 2107 G-G-AGACAGAGC-GGGAAGCCACACGGTGTTTCTGTTCACGACGTCGCCG-CAAGTACA 2162
| | ||| |||| |||| | ||||||||||||| ||||||||| ||||| | | | ||
Sbjct 2128 GAGGAGATAGAGAAGGGATTC-ACACGGTGTTTCTATTCACGACGCCGCCGGCGATT-CA 2185
Query 2163 CGGATCTCCGATTAAGCAACTACTAGGATTTGAGAAGATTCG-TCTGGGAAAGAGTG-AA 2220
|||||| |||| ||||| | ||||||||||||||||||| | |||| |||| || ||
Sbjct 2186 CGGATCGCCGAGGAAGCATTTGTTAGGATTTGAGAAGATTCGAT-TGGGGAAGA-TGGAA 2243
Query 2221 GAAGCGGTGGTTAGGTTTAACGTCA-ATGTGTGTAAGGATCTGAGTGTGGTTGATGAGAC 2279
|||||||||||||||||||| || | | ||||| || ||||||||||| ||||||||||
Sbjct 2244 GAAGCGGTGGTTAGGTTTAAGGT-AGAGGTGTGCAAAGATCTGAGTGTTGTTGATGAGAT 2302
Query 2280 CGGGAAGAGGAAAATCGCGTTAGGTCAT-CATCTTCTCCATGTAGGAAGCTT-GAAACAC 2337
||||||||||| || | ||| || | |||||||| ||||| || | || ||||||
Sbjct 2303 TGGGAAGAGGAAGATTG-GTTTGGGAAAGCATCTTCTTCATGTCGGC-GATTTGAAACAT 2360
Query 2338 TCTTTGAA-CATTAGTGTT-TGATTC 2361
|| || || |||||| | | ||||||
Sbjct 2361 TCCTT-AAGCATTAG-GATCTGATTC 2384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91568948980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5