BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G09750.1 Length=675 Score E Sequences producing significant alignments: (Bits) Value Ahg487795 jgi|Araly1|487795|fgenesh2_kg.6__929__AT5G09750.1 981 0.0 > Ahg487795 jgi|Araly1|487795|fgenesh2_kg.6__929__AT5G09750.1 Length=653 Score = 981 bits (531), Expect = 0.0 Identities = 601/634 (95%), Gaps = 8/634 (1%) Strand=Plus/Plus Query 1 ATGAATAATTATAATATGAACCCATCTCTCTTCCAAAATTACACTTGGaacaacatcatc 60 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAATAATAATAATATGAACCCATCTCTCTTCCAAAATTACACTTGGAACAACATCATC 60 Query 61 aacagcagcaacaacaacaacaagaatgatgatcatcatcatcaacatAATAATGATCCA 120 |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 61 AACAGCAG---CAACAACAACAAGAATGATG---ATCATCATCAACATAATAATGATCCA 114 Query 121 ATCGGTATGGCCATGGACCAGTACACACAGCTCCATAtcttcaatcctttctcttcttct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 115 ATCGGTATGGCCATGGACCAGTACACACAGCTCCATATCTTCAATCCTTTCTCTTCTTCT 174 Query 181 catttccctcctctctcttcttccctcacaaccaccactcttctctccGGAGATCAAGAA 240 |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 175 CATTTCCCTCCTCTCTCTTCTTCCCTCAGTACCACCACTCTTTTCTCCGGAGATCAAGAA 234 Query 241 GACGACGAAGACGAAGAAGAACCTCTAGAGGAACTCGGTGCTATGAAGGAAATGATGTAC 300 || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 235 GAGGACGAAGACGAAGAAGAACCTCTTGAGGAACTCGGTGCTATGAAGGAAATGATGTAC 294 Query 301 AAGATCGCAGCCATGCAATCGGTTGACATCGACCCAGCAACCGTCAAGAAACCCAAACGC 360 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 295 AAGATCGCAGCCATGCAGTCGGTTGACATCGACCCGGCAACCGTCAAGAAACCCAAACGC 354 Query 361 CGTAACGTGAGGATCTCCGACGACCCTCAGAGTGTGGCGGCTAGACATCGCCGTGAGAGA 420 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 355 CGTAACGTAAGGATCTCCGACGACCCTCAGAGTGTGGCGGCTAGACATCGCCGTGAGAGA 414 Query 421 ATCAGTGAGAGGATCAGAATTCTTCAGAGACTCGTGCCAGGTGGCACTAAAATGGATACG 480 ||||||||||| |||||||| || |||||||||||||||||||||||||||||||| || Sbjct 415 ATCAGTGAGAGAATCAGAATCCTCCAGAGACTCGTGCCAGGTGGCACTAAAATGGACACA 474 Query 481 GCTTCAATGCTCGATGAAGCTATACGCTATGTCAAGTTCTTGAAACGGCAGATCCGGCTA 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 475 GCTTCAATGCTCGATGAAGCTATACGCTATGTCAAGTTCTTGAAACGGCAGATCCGCCTA 534 Query 541 CTCAATAATAATACCGG-ATATACTCCTCCGCCGCCGCAAGATCAAGCTTCTCAGGCGGT 599 |||||||||||| |||| | || || |||| ||||||||||||||||||||||||||| | Sbjct 535 CTCAATAATAAT-CCGGGAAATCCTTCTCCTCCGCCGCAAGATCAAGCTTCTCAGGCGTT 593 Query 600 GACGACGTCATGGGTTTCACCGCCACCACCGCCA 633 |||||||||||| |||| || |||||||| ||| Sbjct 594 AACGACGTCATGGATTTCGCCACCACCACCACCA 627 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24779896050 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5