BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09750.1
Length=675
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487795 jgi|Araly1|487795|fgenesh2_kg.6__929__AT5G09750.1 981 0.0
> Ahg487795 jgi|Araly1|487795|fgenesh2_kg.6__929__AT5G09750.1
Length=653
Score = 981 bits (531), Expect = 0.0
Identities = 601/634 (95%), Gaps = 8/634 (1%)
Strand=Plus/Plus
Query 1 ATGAATAATTATAATATGAACCCATCTCTCTTCCAAAATTACACTTGGaacaacatcatc 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATAATAATAATATGAACCCATCTCTCTTCCAAAATTACACTTGGAACAACATCATC 60
Query 61 aacagcagcaacaacaacaacaagaatgatgatcatcatcatcaacatAATAATGATCCA 120
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 AACAGCAG---CAACAACAACAAGAATGATG---ATCATCATCAACATAATAATGATCCA 114
Query 121 ATCGGTATGGCCATGGACCAGTACACACAGCTCCATAtcttcaatcctttctcttcttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 ATCGGTATGGCCATGGACCAGTACACACAGCTCCATATCTTCAATCCTTTCTCTTCTTCT 174
Query 181 catttccctcctctctcttcttccctcacaaccaccactcttctctccGGAGATCAAGAA 240
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 175 CATTTCCCTCCTCTCTCTTCTTCCCTCAGTACCACCACTCTTTTCTCCGGAGATCAAGAA 234
Query 241 GACGACGAAGACGAAGAAGAACCTCTAGAGGAACTCGGTGCTATGAAGGAAATGATGTAC 300
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 235 GAGGACGAAGACGAAGAAGAACCTCTTGAGGAACTCGGTGCTATGAAGGAAATGATGTAC 294
Query 301 AAGATCGCAGCCATGCAATCGGTTGACATCGACCCAGCAACCGTCAAGAAACCCAAACGC 360
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 295 AAGATCGCAGCCATGCAGTCGGTTGACATCGACCCGGCAACCGTCAAGAAACCCAAACGC 354
Query 361 CGTAACGTGAGGATCTCCGACGACCCTCAGAGTGTGGCGGCTAGACATCGCCGTGAGAGA 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 CGTAACGTAAGGATCTCCGACGACCCTCAGAGTGTGGCGGCTAGACATCGCCGTGAGAGA 414
Query 421 ATCAGTGAGAGGATCAGAATTCTTCAGAGACTCGTGCCAGGTGGCACTAAAATGGATACG 480
||||||||||| |||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 415 ATCAGTGAGAGAATCAGAATCCTCCAGAGACTCGTGCCAGGTGGCACTAAAATGGACACA 474
Query 481 GCTTCAATGCTCGATGAAGCTATACGCTATGTCAAGTTCTTGAAACGGCAGATCCGGCTA 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 475 GCTTCAATGCTCGATGAAGCTATACGCTATGTCAAGTTCTTGAAACGGCAGATCCGCCTA 534
Query 541 CTCAATAATAATACCGG-ATATACTCCTCCGCCGCCGCAAGATCAAGCTTCTCAGGCGGT 599
|||||||||||| |||| | || || |||| ||||||||||||||||||||||||||| |
Sbjct 535 CTCAATAATAAT-CCGGGAAATCCTTCTCCTCCGCCGCAAGATCAAGCTTCTCAGGCGTT 593
Query 600 GACGACGTCATGGGTTTCACCGCCACCACCGCCA 633
|||||||||||| |||| || |||||||| |||
Sbjct 594 AACGACGTCATGGATTTCGCCACCACCACCACCA 627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24779896050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5