BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G09755.1

Length=73
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485468 jgi|Araly1|485468|fgenesh2_kg.5__1460__AT3G51140.1         135    2e-32
  Ahg912730 jgi|Araly1|912730|Al_scaffold_0001_2984                   71.3    7e-13


> Ahg485468 jgi|Araly1|485468|fgenesh2_kg.5__1460__AT3G51140.1
Length=1450

 Score =  135 bits (73),  Expect = 2e-32
 Identities = 73/73 (100%), Gaps = 0/73 (0%)
 Strand=Plus/Minus

Query  1   TCCGTTGTAGTCTAGCTGGTCAGGATACTCGGCTCTCACCCGAGAGACCCGGGTTCGAGT  60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  81  TCCGTTGTAGTCTAGCTGGTCAGGATACTCGGCTCTCACCCGAGAGACCCGGGTTCGAGT  22

Query  61  CCCGGCAACGGAG  73
           |||||||||||||
Sbjct  21  CCCGGCAACGGAG  9


> Ahg912730 jgi|Araly1|912730|Al_scaffold_0001_2984
Length=528

 Score = 71.3 bits (38),  Expect = 7e-13
 Identities = 38/38 (100%), Gaps = 0/38 (0%)
 Strand=Plus/Minus

Query  36   TCACCCGAGAGACCCGGGTTCGAGTCCCGGCAACGGAG  73
            ||||||||||||||||||||||||||||||||||||||
Sbjct  528  TCACCCGAGAGACCCGGGTTCGAGTCCCGGCAACGGAG  491



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 1949267583


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5