BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09760.1
Length=1906
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325521 jgi|Araly1|325521|fgenesh1_pm.C_scaffold_6000741 2741 0.0
> Ahg325521 jgi|Araly1|325521|fgenesh1_pm.C_scaffold_6000741
Length=1740
Score = 2741 bits (1484), Expect = 0.0
Identities = 1655/1737 (95%), Gaps = 14/1737 (1%)
Strand=Plus/Plus
Query 1 CTTCGAAACTCCATCATCATCCTCACCGCAGAAAATCCCCAATACGTTGcttctgtctct 60
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 8 CTTCGAAACTCCATCATCATCCTCACCGCAGAAAATCCCCAATCCGCTGCTTCTGTCTCT 67
Query 61 taatcataaccatgtcctccattctcatccttctcttctctctcttcctcttctcctctc 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 TAATCATCACCATGTCCTCCATTCTCATCCTTCTCTTCTCTCTCTTCCTCTTCTCCTCTC 127
Query 121 cctcctcctcctccCGTCACCACCACCACCACAATT-CCGGCGA-CACTTCTCCGGTC-A 177
|||||||||||||||||||||||||||||||||||| ||| | | ||| |||||| | |
Sbjct 128 CCTCCTCCTCCTCCCGTCACCACCACCACCACAATTCCCGCCAATCAC-CCTCCGG-CGA 185
Query 178 -ATCCT-T-C-GTC-GTCTCTCGCCG-CTCAGATCCGTCTCGCTTGTAACGCAACTCGTT 231
| ||| | | ||| || | ||||| |||||||||||||||||||||||||||||||||
Sbjct 186 CA-CCTCTCCGGTCAATCCCGCGCCGTCTCAGATCCGTCTCGCTTGTAACGCAACTCGTT 244
Query 232 ACCCAGACCAATGCGTCTCTTCCCTATCCGAACAGGGTCGGGTTCCTCCGGATCCTAAAC 291
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 245 ACCCAGACCAATGCGTCTCTTCACTATCCGAACCGGGTCGGGTTCCTCCGGATCCTAAAC 304
Query 292 CAATCCAGATCATTCACTCAGCGATCTCATTCTCATTCCAAAACCTCAAAACCGCCCAAT 351
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 305 CAATCCAGATCATCCACTCAGCGATCTCAATCTCATTCCAAAACCTCAAAACCGCCCAAT 364
Query 352 CAAAAATCAAGTCTATTGTAGACTCGTCCGTAGGGAATCTAAACCGTACAAACGCCGCGA 411
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 365 CAAAAATCAAGTCTATCGTAGACTCGTCCGTAGGTAATCTAAACCGTACAAACGCCGCGA 424
Query 412 ACACGTGTCTCCAGCTTCTCACTTACTCCGAGCACCGCACTCAATCGACGGATCAAGCTT 471
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 425 ACACGTGTCTCCAGCTTCTCACTTACTCCCAGCACCGCACTCAATCGACGGATCAAGCTT 484
Query 472 TAACACGTGGCAAAATCAAAGACGCTCGAGCTTGGATGAGCGCTGCTCTAGTGTACCAGT 531
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 TGACACGTGGCAAAATCAAAGACGCTCGAGCTTGGATGAGCGCTGCTCTAGTGTACCAGT 544
Query 532 ACGATTCATGGTCAGCGCTCAAGTACGTCAACGACACGAGCCAAGTAGGTGAAACGATGT 591
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 545 ACGATTCATGGTCAGCGCTCAAGTACGTCAACGACACGAGCCAAGTCGGTGATACGATGT 604
Query 592 CGTTTCTCGACGGACTTATCCACGTCACCAGCAACGCGCTTAGCATGATGGTATCGTACG 651
||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 605 CGTTTCTAGACGGACTTATCCACGTCAGCAGCAACGCGCTTAGCATGATGGTTTCGTACG 664
Query 652 ATAACTTCGGAGACAACGTCGCGTCGTGGACTTACCCAGCAACGGAACGTGACGGGTTTT 711
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 665 ATAACTTCGGAGACAACGTCGCGTCGTGGACTTACCCAGAAACGGAGCGTGACGGGTTTT 724
Query 712 GGGAAAAGACTGGGCCTGGTTTGGGCTTAGATCCGAGTACAGGGCTTAATTTGGGTTTTC 771
|||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 725 GGGAGAAGACTGGGCCGGGTTTGGGCTCGGATCCGAGTACAGGGCTTAATTTGGGTTTTC 784
Query 772 CTTCCGGTTTAAAAGAAGACGTGACGGTGTGTAAAGACGGAAAATGCGGTTACAAGACGG 831
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 785 CTTCCGGTTTAAAAGAAGACGTGACGGTGTGTAGAGACGGAAAATGCGGTTACAAGACGG 844
Query 832 TGCAAGACGCCGTTAACGCTGCGCCGGAGGATAACGGAATGCGTAAGTTCGTTATAAAGA 891
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||
Sbjct 845 TGCAAGACGCCGTTAACGCCGCGCCGGAGGATATCGGAATGCGTAAGTTCGTTATAAGGA 904
Query 892 TTAGCGAAGGAGTCTACGAGGAGAACGTTATTGTTCCGTTTGAGAAGAAGAACGTTGTGT 951
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 905 TTAGCGAAGGAGTGTACGAGGAGAACGTTATTGTTCCGTTTGAGAAGAAGAACGTAGT-T 963
Query 952 TT-ATCGGTGACGGTATGGGCAAAACGGTCATTACAGGTTCGTTAAACGCCGGTATGCCT 1010
|| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 964 TTCATCGGTGACGGTATGGGCAATACGGTCATTACAGGTTCGTTAAACGCTGGTATGCCT 1023
Query 1011 GGGATCACTACGTACAATACTGCAACTGTCGGAGTGGTAGGAGATGGATTCATGGCTCGT 1070
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1024 GGGATCACTACGTACAACACTGCAACTGTCGGAGTGGTAGGAGATGGATTTATGGCTCGT 1083
Query 1071 GATCTAACGTTCCAGAACACGGCGGGACCAGACGCTCACCAAGCGGTGGCGTTTAGATCC 1130
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1084 GATCTAACATTCCAGAACACGGCGGGACCAGACGCTCATCAAGCGGTGGCGTTTAGATCC 1143
Query 1131 GACAGCGATTTTTCTCTGATCGAGAATTGCGAGTTCCTTGGGAACCAAGACACTCTCTAT 1190
|||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct 1144 GACAGCGATTTTTCTCTGCTTGAGAATTGTGAGTTCCTTGGGAACCAAGACACTCTCTAT 1203
Query 1191 GCCCATGGTCTTCGTCAGTTCTACAAAAACTGTCGTATCCAAGGAAATGTTGACTTTATC 1250
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1204 GCCCATGGTCTTCGCCAGTTCTACAAAAACTGCCGTATCCAAGGAAATGTTGACTTCATC 1263
Query 1251 TTTGGGAATTCAGCTGCTGTCTTCCAAGACTGTGAAATCCTAATCGCACCGCGTCAAATT 1310
||||| |||||||||||||||||||||||||||||||| | || |||||||||||| ||
Sbjct 1264 TTTGGCAATTCAGCTGCTGTCTTCCAAGACTGTGAAATTTTGATTGCACCGCGTCAACTT 1323
Query 1311 AACCCTGAAAAGGGCGAGAAAAACGCAGTCACTGCCCAAGGAAGGATTGACCCGTCCCAG 1370
||||| |||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 1324 AACCCCGAAAAGGGCGAGAAAAACGCAGTCACTGCCCAAGGAAGAATCGACCCGTCACAA 1383
Query 1371 TCCACGGGTTTCGTGTTCTTGAACTGTTTGATTAACGGAACAGAGGAGTACATGAAGCTG 1430
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1384 TCCACTGGTTTCGTGTTTTTGAACTGTTTGATTAACGGAACAGAGGAGTATATGAAGCTG 1443
Query 1431 TTTAAAGCTAACCCTAAGGTGCATAAGAACTTCTTGGGGAGGCCATGGAAAGATTACTCA 1490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 TTTAAAGCTAACCCTAAGGTGCATAAGAACTTCTTGGGGAGGCCATGGAAAGATTACTCA 1503
Query 1491 AGGACTGTGTTTATAGGTTGTAATTTAGAGGCTTTGATTACTCCTGATGGATGGTTACCT 1550
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 AGGACTGTGTTTATAGGTTGTAATTTAGAGGCTTTGATTACTCCTGATGGATGGTTACCG 1563
Query 1551 TGGAGCGGGGATTTCGCGCTCAAGACACTTTATTACGGTGAATCTAAGAACACGGGTCCG 1610
|||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||
Sbjct 1564 TGGAGCGGGGATTTCGCGCTGAAGACGCTTTATTACGGTGAATCTAAGAATACAGGTCCG 1623
Query 1611 GGATCAGATAGGTCACAAAGGGTTTCATGGAGCAGTCAGATACCGGACGAGCATGTTCAT 1670
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1624 GGATCAGATAGGTCACAAAGGGTTTCATGGAGCAGTGAGATACCGGACGAGCATGTTCAT 1683
Query 1671 GTGTATTCGGTGGCTAACTTTATTCAGGCTGATGAGTGGGCTTCGATGTCTGCTTAA 1727
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1684 GTGTATTCGCTGGCTAACTTTATTCAGGCTGAGGAGTGGGCTTCGATGTCTGCTTAA 1740
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71609660600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5