BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09770.1
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940438 jgi|Araly1|940438|scaffold_600982.1 819 0.0
Ahg496679 jgi|Araly1|496679|fgenesh2_kg.8__2495__AT5G64650.1 562 1e-159
> Ahg940438 jgi|Araly1|940438|scaffold_600982.1
Length=524
Score = 819 bits (443), Expect = 0.0
Identities = 496/522 (95%), Gaps = 2/522 (0%)
Strand=Plus/Plus
Query 24 ATCACTTCTCCGACGCAGAAATGACGAAGTTCAGGAAGCTTGGTCGGCCGGCGGGTCACC 83
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1 ATCACTTCTCCGACGCAGAAATGACCAAGTTCAGGAAGCTTGGCCGGCCGGCGGGTCACC 60
Query 84 GTATGTCCATGCTTAGGACTATGGTTTCTCAGTTGGTGAAGCACGAGCGTATTGAGACCA 143
||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 61 GTATGTCCATGCTCAGGACAATGGTTTCTCAGTTAGTGAAGCACGAGCGTATTGAGACCA 120
Query 144 CTGTCACTAAGGCTAAAGAGGTTCGTCGTCTTGCTGATAATATGATTCAACTCGGCAAAG 203
| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 121 CCGTCACTAAGGCTAAAGAAGTTCGTCGTCTTGCTGATAATATGGTTCAACTCGGCAAAG 180
Query 204 AGGGGT-CACTCTCTGCTGCAAGGCGAGCAGCTGGTTTTGTGAGAGGAGATGATGTCCTT 262
| |||| ||||| |||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 A-GGGTACACTCGCTGCCGCAAGGAGAGCAGCTGGTTTTGTGAGAGGAGATGATGTCCTT 239
Query 263 CACAAGATTTTCACAGAACTGGCACATAGATACAAAGATAGAGCTGGTGGATACACAAGA 322
|||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 CACAAGATTTTCACTGAATTGGCATATAGATACAAAGATAGAGCTGGTGGATACACAAGA 299
Query 323 CTGCTACGTACTCGCATACGAGTTGGTGATGCTGCTCCTATGGCCTATATCGAGTTTATT 382
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTGCTCCGTACTCGCATACGAGTTGGTGATGCTGCTCCTATGGCCTATATCGAGTTTATT 359
Query 383 GACAGAGAGAACGAGCTTAGGCAATCAAAACCAGCAACACCTCAACCACCGCAACGAGTG 442
|||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 360 GACAGAGAGAACGAACTTAGGCAATCGAAACCAGCAACACCTCAACCACCACAACGAGTG 419
Query 443 CCATTGGACCCATGGGAAAGATCTCGGCTCACCAGGCAGTTCGCTCCGCCTAAGGAGGAG 502
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 420 CCGTTGGACCCATGGGAAAGATCTCGGCTCACCAAGCAGTTCGCTCCGCCTAAGGAGGAG 479
Query 503 AAAATCCCTGATTCTGAGCTGTAATGTGGCATAAGCAATTTC 544
|||| | ||||||||||||||||||||||||||| ||||||
Sbjct 480 AAAAGCTCTGATTCTGAGCTGTAATGTGGCATAATAAATTTC 521
> Ahg496679 jgi|Araly1|496679|fgenesh2_kg.8__2495__AT5G64650.1
Length=689
Score = 562 bits (304), Expect = 1e-159
Identities = 426/486 (88%), Gaps = 4/486 (1%)
Strand=Plus/Plus
Query 23 GATCACTTCTCCGACGCAGAAATGACGAAGTTCAGGAAGCTTGGTCGGCCGGCGGGTCAC 82
|||| |||| ||| |||||||||||| |||||||||||||| || || || || |||||
Sbjct 12 GATCGCTTCGCCGTCGCAGAAATGACCAAGTTCAGGAAGCTCGGCCGCCCAGCTGGTCAT 71
Query 83 CGTATGTCCATGCTTAGGACTATGGTTTCTCAGTTGGTGAAGCACGAGCGTATTGAGACC 142
|||||||||||||| ||||||||||||||||| |||||||| |||||| | |||||||||
Sbjct 72 CGTATGTCCATGCTCAGGACTATGGTTTCTCAATTGGTGAAACACGAGAGAATTGAGACC 131
Query 143 ACTGTCACTAAGGCTAAAGAGGTTCGTCGTCTTGCTGATAATATGATTCAACTCGGCAAA 202
||||| | ||||||||||| || ||||||||||||||||||||| ||||||| || |||
Sbjct 132 ACTGTTGCAAAGGCTAAAGAAGTCCGTCGTCTTGCTGATAATATGGTTCAACTTGGAAAA 191
Query 203 GAGGGGTCACTCTCTGCTGCAAGGCGAGCAGCTGGTTTTGTGAGAGGAGATGATGTCCTT 262
||||| |||||| |||| ||||| ||||| ||||| ||||| |||||||||||||| |||
Sbjct 192 GAGGGCTCACTCGCTGCAGCAAGACGAGCTGCTGGGTTTGTTAGAGGAGATGATGTACTT 251
Query 263 CACAAGATTTTCACAGAACTGGCACATAGATACAAAGATAGAGCTGGTGGATACACAAGA 322
||||||||||| |||||| |||| || ||||||||||||||||||||||||||||||||
Sbjct 252 CACAAGATTTTTACAGAATTGGCTTATCGATACAAAGATAGAGCTGGTGGATACACAAGA 311
Query 323 CTGCTACGTACTCGCATACGAGTTGGTGATGCTGCTCCTATGGCCTATATCGAGTTTATT 382
|||| |||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 312 ATGCTTCGTACTCGCATACGTGTTGGTGATGCTGCACCAATGGCCTATATCGAGTTTATT 371
Query 383 GACAGAGAGAACGAGCTTAGGCAATCAAAACCAGCAACACCTCAACCACCGCAACGAGTG 442
|| |||||||||||||| || |||||||||||||||||||||||||| || | ||||||
Sbjct 372 GATAGAGAGAACGAGCTAAGACAATCAAAACCAGCAACACCTCAACCGCCACCTCGAGTG 431
Query 443 CCA-TTGGACCCATGGGAAAGATCTCGGCTCACCAGGCAGT-TCGCTCCGCCTAAGGAGG 500
|| ||| | ||||||| ||||| || ||||||||||||| | ||||| || |||||||
Sbjct 432 CCGCTTG-ATCCATGGGCTAGATCCCGTCTCACCAGGCAGTAT-GCTCCACCAAAGGAGG 489
Query 501 AGAAAA 506
||||||
Sbjct 490 AGAAAA 495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27753483576
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5