BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G09770.1 Length=753 Score E Sequences producing significant alignments: (Bits) Value Ahg940438 jgi|Araly1|940438|scaffold_600982.1 819 0.0 Ahg496679 jgi|Araly1|496679|fgenesh2_kg.8__2495__AT5G64650.1 562 1e-159 > Ahg940438 jgi|Araly1|940438|scaffold_600982.1 Length=524 Score = 819 bits (443), Expect = 0.0 Identities = 496/522 (95%), Gaps = 2/522 (0%) Strand=Plus/Plus Query 24 ATCACTTCTCCGACGCAGAAATGACGAAGTTCAGGAAGCTTGGTCGGCCGGCGGGTCACC 83 ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 1 ATCACTTCTCCGACGCAGAAATGACCAAGTTCAGGAAGCTTGGCCGGCCGGCGGGTCACC 60 Query 84 GTATGTCCATGCTTAGGACTATGGTTTCTCAGTTGGTGAAGCACGAGCGTATTGAGACCA 143 ||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 61 GTATGTCCATGCTCAGGACAATGGTTTCTCAGTTAGTGAAGCACGAGCGTATTGAGACCA 120 Query 144 CTGTCACTAAGGCTAAAGAGGTTCGTCGTCTTGCTGATAATATGATTCAACTCGGCAAAG 203 | ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 121 CCGTCACTAAGGCTAAAGAAGTTCGTCGTCTTGCTGATAATATGGTTCAACTCGGCAAAG 180 Query 204 AGGGGT-CACTCTCTGCTGCAAGGCGAGCAGCTGGTTTTGTGAGAGGAGATGATGTCCTT 262 | |||| ||||| |||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 181 A-GGGTACACTCGCTGCCGCAAGGAGAGCAGCTGGTTTTGTGAGAGGAGATGATGTCCTT 239 Query 263 CACAAGATTTTCACAGAACTGGCACATAGATACAAAGATAGAGCTGGTGGATACACAAGA 322 |||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 240 CACAAGATTTTCACTGAATTGGCATATAGATACAAAGATAGAGCTGGTGGATACACAAGA 299 Query 323 CTGCTACGTACTCGCATACGAGTTGGTGATGCTGCTCCTATGGCCTATATCGAGTTTATT 382 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 CTGCTCCGTACTCGCATACGAGTTGGTGATGCTGCTCCTATGGCCTATATCGAGTTTATT 359 Query 383 GACAGAGAGAACGAGCTTAGGCAATCAAAACCAGCAACACCTCAACCACCGCAACGAGTG 442 |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 360 GACAGAGAGAACGAACTTAGGCAATCGAAACCAGCAACACCTCAACCACCACAACGAGTG 419 Query 443 CCATTGGACCCATGGGAAAGATCTCGGCTCACCAGGCAGTTCGCTCCGCCTAAGGAGGAG 502 || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 420 CCGTTGGACCCATGGGAAAGATCTCGGCTCACCAAGCAGTTCGCTCCGCCTAAGGAGGAG 479 Query 503 AAAATCCCTGATTCTGAGCTGTAATGTGGCATAAGCAATTTC 544 |||| | ||||||||||||||||||||||||||| |||||| Sbjct 480 AAAAGCTCTGATTCTGAGCTGTAATGTGGCATAATAAATTTC 521 > Ahg496679 jgi|Araly1|496679|fgenesh2_kg.8__2495__AT5G64650.1 Length=689 Score = 562 bits (304), Expect = 1e-159 Identities = 426/486 (88%), Gaps = 4/486 (1%) Strand=Plus/Plus Query 23 GATCACTTCTCCGACGCAGAAATGACGAAGTTCAGGAAGCTTGGTCGGCCGGCGGGTCAC 82 |||| |||| ||| |||||||||||| |||||||||||||| || || || || ||||| Sbjct 12 GATCGCTTCGCCGTCGCAGAAATGACCAAGTTCAGGAAGCTCGGCCGCCCAGCTGGTCAT 71 Query 83 CGTATGTCCATGCTTAGGACTATGGTTTCTCAGTTGGTGAAGCACGAGCGTATTGAGACC 142 |||||||||||||| ||||||||||||||||| |||||||| |||||| | ||||||||| Sbjct 72 CGTATGTCCATGCTCAGGACTATGGTTTCTCAATTGGTGAAACACGAGAGAATTGAGACC 131 Query 143 ACTGTCACTAAGGCTAAAGAGGTTCGTCGTCTTGCTGATAATATGATTCAACTCGGCAAA 202 ||||| | ||||||||||| || ||||||||||||||||||||| ||||||| || ||| Sbjct 132 ACTGTTGCAAAGGCTAAAGAAGTCCGTCGTCTTGCTGATAATATGGTTCAACTTGGAAAA 191 Query 203 GAGGGGTCACTCTCTGCTGCAAGGCGAGCAGCTGGTTTTGTGAGAGGAGATGATGTCCTT 262 ||||| |||||| |||| ||||| ||||| ||||| ||||| |||||||||||||| ||| Sbjct 192 GAGGGCTCACTCGCTGCAGCAAGACGAGCTGCTGGGTTTGTTAGAGGAGATGATGTACTT 251 Query 263 CACAAGATTTTCACAGAACTGGCACATAGATACAAAGATAGAGCTGGTGGATACACAAGA 322 ||||||||||| |||||| |||| || |||||||||||||||||||||||||||||||| Sbjct 252 CACAAGATTTTTACAGAATTGGCTTATCGATACAAAGATAGAGCTGGTGGATACACAAGA 311 Query 323 CTGCTACGTACTCGCATACGAGTTGGTGATGCTGCTCCTATGGCCTATATCGAGTTTATT 382 |||| |||||||||||||| |||||||||||||| || ||||||||||||||||||||| Sbjct 312 ATGCTTCGTACTCGCATACGTGTTGGTGATGCTGCACCAATGGCCTATATCGAGTTTATT 371 Query 383 GACAGAGAGAACGAGCTTAGGCAATCAAAACCAGCAACACCTCAACCACCGCAACGAGTG 442 || |||||||||||||| || |||||||||||||||||||||||||| || | |||||| Sbjct 372 GATAGAGAGAACGAGCTAAGACAATCAAAACCAGCAACACCTCAACCGCCACCTCGAGTG 431 Query 443 CCA-TTGGACCCATGGGAAAGATCTCGGCTCACCAGGCAGT-TCGCTCCGCCTAAGGAGG 500 || ||| | ||||||| ||||| || ||||||||||||| | ||||| || ||||||| Sbjct 432 CCGCTTG-ATCCATGGGCTAGATCCCGTCTCACCAGGCAGTAT-GCTCCACCAAAGGAGG 489 Query 501 AGAAAA 506 |||||| Sbjct 490 AGAAAA 495 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27753483576 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5