BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G09780.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value Ahg892883 jgi|Araly1|892883|Al_scaffold_0006_879 1149 0.0 > Ahg892883 jgi|Araly1|892883|Al_scaffold_0006_879 Length=906 Score = 1149 bits (622), Expect = 0.0 Identities = 842/940 (90%), Gaps = 47/940 (5%) Strand=Plus/Plus Query 1 ATGGCAAGTAACCCTGATTTTCTTTGGTGCAAAGAAGAGAGGAAGCAGGAAAGCTTCTTC 60 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1 ATGGCTAGTAACCCTGATTTTCTTTGGTGCAAAGAAGAGAGGAAGCAGGAAAGCTTCGTC 60 Query 61 AAAGTTCTTAAGCGTTCCGACATGTCTTCAGAGGACACGCGAGCGATTCCGTACGACTTT 120 ||| ||||||||| || |||||||||||||||| |||||||||| ||||| ||||||||| Sbjct 61 AAACTTCTTAAGCATTTCGACATGTCTTCAGAGAACACGCGAGCAATTCCTTACGACTTT 120 Query 121 GTGATAAACTTCTCTGACAATGAGCTCTCCGGAGACATGAAGTTCAGAGTGCAATGGGGA 180 |||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||||| Sbjct 121 GTGAGAAACTTCTCTGACAATGAGCTCTCCGGAAACATGAAGATAAGAGTGCAATGGGGA 180 Query 181 AACTCTTGGAAAGTAAAAATCTCCAAGAACCCGAGATTCTACTTCATGGAGAAGTCTGGA 240 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 181 AACTCTTGGAAAGTAAAAATCTCCAAGAACCCGAGGTTCTACTTCATGGAGAAGTCTGGA 240 Query 241 TGGGAGAAGTTCGTGATAGACAATGCCTTGGGAGACCACGAGTTTCTTACCTTCACTCAC 300 ||||||| ||| |||| ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 241 TGGGAGACGTTTGTGAGAGACAATGCCTTGGGAGACTACGAGTTTCTTACCTTCACTCAC 300 Query 301 AAAGGACAGATGAGCTTCACTGTGAAAATCTTCAACAAAGATGGCAAGGAGATGATGCAA 360 |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 301 AAAGGAAAGATGAGCTTCACTGTGAACATCTTCAACAAAGATGGCAAGGAGATGATGCAA 360 Query 361 CCTCCGCAATCCAGAGCCTCTTTCGCTTCTTCTAGTCGTGTCAAAACAGAACAAGATGTC 420 ||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||| Sbjct 361 CCTCCGCAATCCAGAGCCTTTTTGGCTTCTTCTAGTCGTATCAAAACAGAACAAGATGTC 420 Query 421 AAGAGGGAGGAAGAGGTGTTGGTGTCTTCTGACTCGAGGTCTCGTGGCCCGACAACAGCA 480 |||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 421 AAGA--G-GGAAGAGGTGTTGGTGTCTTCTGACTCGAGTTCTCGTGGCCCGACAACAGCA 477 Query 481 GCTG-A---AA--CTAATAGAGGAGGCA-GCTACAAAAGGAAGCTCAACTTTGGGAAGAA 533 |||| | || |||| ||| ||||| | ||||||||||||||||||||| || ||| Sbjct 478 GCTGTATCTAATGGTAATGGAGAAGGCATG-TACAAAAGGAAGCTCAACTTT-GG--GAA 533 Query 534 GAAAGCTGAGGAAACCCAAACTTACAAGAGGACTGAGAGGACCCAAAATTCCAAGAGGAC 593 | | | | | || | | | | | || |||||||||||||||||||| Sbjct 534 G--A----A-G--A---AAGC-T-------G-C-G-GA-AACCCAAAATTCCAAGAGGAC 569 Query 594 GGAGAGAGTGGTTAGTAAGG-AGAGAGTTTATGCAGGCGAACCTTCCTCTTCTGTTGCAG 652 ||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||| Sbjct 570 TGAGAGAGTGGTTAGT-AGGCAGAGAGTTTATGCAGGCGCACCTTCCTCTTCTGTTGCAG 628 Query 653 GATTCAAAATCTTTATCTCGAAATCATACATCAAATCCCTGGCGATCCCGA-AACCTTTT 711 |||||| ||||||||||||||||||||||| ||||||||||||||||||| || ||||| Sbjct 629 AATTCAACATCTTTATCTCGAAATCATACATAAAATCCCTGGCGATCCCGACAA-CTTTT 687 Query 712 G-GAA--ATTATATGCCGAAGGAGAAAACAAGGGTCAAGATCCATCATCCAGATGGGGAG 768 | || |||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct 688 GCAAATGATTATATGCCGAAGGAGAAAACAATGGTCAAGATCCATCATCCAGATGGGAAG 747 Query 769 AAGACATGGAAGGTTGTTTTTGTGGTAAAAGAGAGGGGTCAAATTTTCTCTGGTGGATGG 828 ||| ||||||| |||| ||||||||||||| ||| |||||| |||||||||||||||||| Sbjct 748 AAGTCATGGAATGTTGCTTTTGTGGTAAAAAAGAAGGGTCACATTTTCTCTGGTGGATGG 807 Query 829 AAACGTTTGTGCAAGGAGTATCCTGTTGTTTTTGGGGACACTTGCAAATTCACCCTCATC 888 ||| ||||||| | ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 808 AAATGTTTGTGTAGGGAGTATCCTGTTGTTTTTGGGGACACTTGCAAATTCACACTCATC 867 Query 889 ACACCACT-CGAGCTGCTTCTAGTTGTCTCAAAGCCATAA 927 | |||| | |||||||||||||| ||| |||| ||| ||| Sbjct 868 AAACCA-TACGAGCTGCTTCTAGCTGTGTCAAGGCCCTAA 906 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34386871134 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5