BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09780.1
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892883 jgi|Araly1|892883|Al_scaffold_0006_879 1149 0.0
> Ahg892883 jgi|Araly1|892883|Al_scaffold_0006_879
Length=906
Score = 1149 bits (622), Expect = 0.0
Identities = 842/940 (90%), Gaps = 47/940 (5%)
Strand=Plus/Plus
Query 1 ATGGCAAGTAACCCTGATTTTCTTTGGTGCAAAGAAGAGAGGAAGCAGGAAAGCTTCTTC 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGCTAGTAACCCTGATTTTCTTTGGTGCAAAGAAGAGAGGAAGCAGGAAAGCTTCGTC 60
Query 61 AAAGTTCTTAAGCGTTCCGACATGTCTTCAGAGGACACGCGAGCGATTCCGTACGACTTT 120
||| ||||||||| || |||||||||||||||| |||||||||| ||||| |||||||||
Sbjct 61 AAACTTCTTAAGCATTTCGACATGTCTTCAGAGAACACGCGAGCAATTCCTTACGACTTT 120
Query 121 GTGATAAACTTCTCTGACAATGAGCTCTCCGGAGACATGAAGTTCAGAGTGCAATGGGGA 180
|||| |||||||||||||||||||||||||||| |||||||| | |||||||||||||||
Sbjct 121 GTGAGAAACTTCTCTGACAATGAGCTCTCCGGAAACATGAAGATAAGAGTGCAATGGGGA 180
Query 181 AACTCTTGGAAAGTAAAAATCTCCAAGAACCCGAGATTCTACTTCATGGAGAAGTCTGGA 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 AACTCTTGGAAAGTAAAAATCTCCAAGAACCCGAGGTTCTACTTCATGGAGAAGTCTGGA 240
Query 241 TGGGAGAAGTTCGTGATAGACAATGCCTTGGGAGACCACGAGTTTCTTACCTTCACTCAC 300
||||||| ||| |||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 TGGGAGACGTTTGTGAGAGACAATGCCTTGGGAGACTACGAGTTTCTTACCTTCACTCAC 300
Query 301 AAAGGACAGATGAGCTTCACTGTGAAAATCTTCAACAAAGATGGCAAGGAGATGATGCAA 360
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 AAAGGAAAGATGAGCTTCACTGTGAACATCTTCAACAAAGATGGCAAGGAGATGATGCAA 360
Query 361 CCTCCGCAATCCAGAGCCTCTTTCGCTTCTTCTAGTCGTGTCAAAACAGAACAAGATGTC 420
||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||
Sbjct 361 CCTCCGCAATCCAGAGCCTTTTTGGCTTCTTCTAGTCGTATCAAAACAGAACAAGATGTC 420
Query 421 AAGAGGGAGGAAGAGGTGTTGGTGTCTTCTGACTCGAGGTCTCGTGGCCCGACAACAGCA 480
|||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 AAGA--G-GGAAGAGGTGTTGGTGTCTTCTGACTCGAGTTCTCGTGGCCCGACAACAGCA 477
Query 481 GCTG-A---AA--CTAATAGAGGAGGCA-GCTACAAAAGGAAGCTCAACTTTGGGAAGAA 533
|||| | || |||| ||| ||||| | ||||||||||||||||||||| || |||
Sbjct 478 GCTGTATCTAATGGTAATGGAGAAGGCATG-TACAAAAGGAAGCTCAACTTT-GG--GAA 533
Query 534 GAAAGCTGAGGAAACCCAAACTTACAAGAGGACTGAGAGGACCCAAAATTCCAAGAGGAC 593
| | | | | || | | | | | || ||||||||||||||||||||
Sbjct 534 G--A----A-G--A---AAGC-T-------G-C-G-GA-AACCCAAAATTCCAAGAGGAC 569
Query 594 GGAGAGAGTGGTTAGTAAGG-AGAGAGTTTATGCAGGCGAACCTTCCTCTTCTGTTGCAG 652
||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 570 TGAGAGAGTGGTTAGT-AGGCAGAGAGTTTATGCAGGCGCACCTTCCTCTTCTGTTGCAG 628
Query 653 GATTCAAAATCTTTATCTCGAAATCATACATCAAATCCCTGGCGATCCCGA-AACCTTTT 711
|||||| ||||||||||||||||||||||| ||||||||||||||||||| || |||||
Sbjct 629 AATTCAACATCTTTATCTCGAAATCATACATAAAATCCCTGGCGATCCCGACAA-CTTTT 687
Query 712 G-GAA--ATTATATGCCGAAGGAGAAAACAAGGGTCAAGATCCATCATCCAGATGGGGAG 768
| || |||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 688 GCAAATGATTATATGCCGAAGGAGAAAACAATGGTCAAGATCCATCATCCAGATGGGAAG 747
Query 769 AAGACATGGAAGGTTGTTTTTGTGGTAAAAGAGAGGGGTCAAATTTTCTCTGGTGGATGG 828
||| ||||||| |||| ||||||||||||| ||| |||||| ||||||||||||||||||
Sbjct 748 AAGTCATGGAATGTTGCTTTTGTGGTAAAAAAGAAGGGTCACATTTTCTCTGGTGGATGG 807
Query 829 AAACGTTTGTGCAAGGAGTATCCTGTTGTTTTTGGGGACACTTGCAAATTCACCCTCATC 888
||| ||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 808 AAATGTTTGTGTAGGGAGTATCCTGTTGTTTTTGGGGACACTTGCAAATTCACACTCATC 867
Query 889 ACACCACT-CGAGCTGCTTCTAGTTGTCTCAAAGCCATAA 927
| |||| | |||||||||||||| ||| |||| ||| |||
Sbjct 868 AAACCA-TACGAGCTGCTTCTAGCTGTGTCAAGGCCCTAA 906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34386871134
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5