BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09790.2
Length=1363
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487800 jgi|Araly1|487800|fgenesh2_kg.6__934__AT5G09790.2 2150 0.0
> Ahg487800 jgi|Araly1|487800|fgenesh2_kg.6__934__AT5G09790.2
Length=1359
Score = 2150 bits (1164), Expect = 0.0
Identities = 1304/1369 (95%), Gaps = 19/1369 (1%)
Strand=Plus/Plus
Query 1 ATGGCCACATGGAACGCATCCTC-CCCTGCGGCGTCTCCTTGCTCATCGAGGCGACGAAC 59
||||||||||||| ||| ||||| ||| ||||||||||||||||||| |||||||| ||
Sbjct 1 ATGGCCACATGGAGCGCTTCCTCTCCC-ACGGCGTCTCCTTGCTCATCCAGGCGACGGAC 59
Query 60 GAAAGCTCCAGCGAGACGCCCTTCCTCCGAATCTCCACCACCGAGGAAGATGAAATCAAT 119
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GAAAGCTCCAGCTAGACGCCCTTCCTCCGAATCTCCACCACCGAGGAAGATGAAATCAAT 119
Query 120 GGCTGAGATAATGGCGAAATCTGTCCCTGTGGTTGAACaagaagaagaagaagacgaaga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GGCTGAGATAATGGCGAAATCTGTCCCTGTGGTTGAACAAGAAGAAGAAGAAGACGAAGA 179
Query 180 CAGCTACAGTAACGTCACCTGCGAGAAATGTGGTTCTGGAGAAGGAGACGATGAGCTTCT 239
|||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 180 CAGCTACAGTGACGTCACCTGCGAGAAATGTGGCTCCGGAGAAGGAGACGATGAGCTTCT 239
Query 240 TCTCTGTGACAAATGCGATAGAGGCTTTCACATGAAATGCCTTAGACCCATTGTTGTTCG 299
|||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 240 TCTCTGTGACAAATGCGATAGAGGGTTTCACATGAAATGCCTTAGACCGATCGTTGTTCG 299
Query 300 TGTCCCCATTGGAACTTGGCTTTGTGTCGATTGTTCCGACCAACGACCTGTAAGAAGGTT 359
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGTCCCCATTGGACCTTGGCTTTGTGTCGATTGTTCCGACCAACGACCTGTAAGAAGGTT 359
Query 360 ATCTCAGAAGAAGATTTTACATTTCTTTCGGATTGAGAAGCATACTCATCAAACAGACAA 419
|||||||||||||||||| ||||||||||||||||||||||| ||||| | |||||||||
Sbjct 360 ATCTCAGAAGAAGATTTTGCATTTCTTTCGGATTGAGAAGCAAACTCACCGAACAGACAA 419
Query 420 ATTGGAATTGAGTCAAGAAGAAACTAGAAAGCGGAGACGATCTTGCTCTTTGACAGTGAA 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 420 ATTGGAATTGAGTCAAGAAGAAACTAGAAAGCGGAGACGATCTTGCTCTTTGACTGTGAA 479
Query 480 GAAAAGAAGGAGAAAACTCTTACCTTTGGTTCCATCAGAAGATCCTGATCAGAGGCTTGC 539
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 480 GAAGAGAAGGAGAAAACTCTTACCTTTGGTTCCATCAGAAGATCCTGATCGGAGGCTTGC 539
Query 540 ACAAATGGGAACACTTGCTTCTGCATTAACGGCATTGGGTATCAAATACAGCGATGGTTT 599
||| ||||| ||||||||| |||||||||||||||||||||||||||||||||| || ||
Sbjct 540 ACAGATGGGCACACTTGCTACTGCATTAACGGCATTGGGTATCAAATACAGCGACGGCTT 599
Query 600 AAATTATGTTCCCGGAATGGCTCCTCGGTCTGCAAATCAATCCAAGTTAGAGAAAGGTGG 659
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 600 AAATTATGTTCCCGGAATGGCTCCTCGGTCTGCAAATCAATCCAAGTTCGAGAAAGGTGG 659
Query 660 GATGCAGGTGCTATGC-AAAGAAGATTTAGAGACATTGGAACAATGTCAATCTATGTATA 718
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GATGCAGGTGCTAT-CGAAAGAAGATTTAGAGACATTGGAACAATGTCAATCTATGTATA 718
Query 719 GACGAGGAGAATGCCCTCCTCTCGTTGTGGTATTTGATCCGCTTGAAGGTTACACAGTTG 778
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 719 GACGAGGAGAATGCCCTCCTCTCGTTGTGGTATTCGATCCGCTTGAAGGTTACACAGTTG 778
Query 779 AAGCAGATGGTCCTATTAAGGACTTAACATTCATAGCTGAATATACAGGGGATGTTGATT 838
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AAGCAGATGGTCCTATAAAGGACTTAACATTCATAGCTGAATATACAGGGGATGTTGATT 838
Query 839 ACTTGAAAAACCGAGAAAAAGACGATTGTGACAGCATCATGACTCTCCTTTTATCAGAAG 898
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ACTTAAAAAACCGAGAAAAAGACGATTGTGACAGCATCATGACTCTCCTTTTATCAGAAG 898
Query 899 ATCCTTCAAAGACTCTTGTTATCTGTCCAGACAAGTTTGGAAACATATCTCGCTTCATTA 958
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 899 ATCCTTCGAAGACTCTTGTTATCTGTCCCGACAAGTTTGGAAACATATCTCGCTTCATTA 958
Query 959 ATGGCATTAACAATCACAATCCGGTTGCTAAGAAGAAGCAGAACTGCAAATGCGTGAGGT 1018
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 959 ATGGCATCAACAATCACAATCCGTTTGCTAAGAAGAAGCAGAACTGCAAATGCGTGAGGT 1018
Query 1019 ATAGCATAAACGGCGAATGTCGAGTTCTTCTAGTGGCTACACGCGATATATCGAAAGGGG 1078
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1019 ATAGCATAAACGGTGAATGTCGAGTTCTTCTAGTGGCTACACGCGATATATCGAAGGGGG 1078
Query 1079 AAAGGCTCTATTATGACTACAATGGTTATGAACATGAGTATCCTACTCATCACTTCCTCT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 AAAGGCTCTATTATGACTACAATGGTTATGAACATGAGTATCCTACTCATCACTTCCTCT 1138
Query 1139 GATCTTTCAATTCTAACAGTTCTACAGAGTCTCTAGATCAGATGTTCTTTTTGTTGCCAT 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GATCTTTCAATTCTAACAGTTCTACAGAGTCTCTAGATCAGATGTTCTTTTTGTTGCCAT 1198
Query 1199 ATTACAGGTCAATTATAAATGTAGGGCTGCTGAATAT-ATGGCCTT-T-AATTATGAAGT 1255
||||||||||||||| |||||| | | | | | | ||| | || | |||||||||||
Sbjct 1199 ATTACAGGTCAATTAGAAATGTCTGAATTAT-A-TGTTATG-CATTATTAATTATGAAGT 1255
Query 1256 TAGCGGTAGAATAATTGGATTTGGAATG--A--CATTACAGAGATTAAGATGTGGCAAAT 1311
|||||||||||||||||||||||||||| | ||||| |||||||||| | |||||
Sbjct 1256 TAGCGGTAGAATAATTGGATTTGGAATGGCAGGCATTATAGAGATTAAG--G---CAAAT 1310
Query 1312 GTCAATTGCTGAACTTTTGTTTGATATCAAATGAAATCCTAACCTTTTT 1360
|||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 GTCAATGGCTGAACTTTTGTTTGATATCAAATGAAATCCTAACCTTTTT 1359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51008462946
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5