BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09800.1
Length=1402
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487801 jgi|Araly1|487801|fgenesh2_kg.6__935__AT5G09800.1 1812 0.0
> Ahg487801 jgi|Araly1|487801|fgenesh2_kg.6__935__AT5G09800.1
Length=1330
Score = 1812 bits (981), Expect = 0.0
Identities = 1187/1284 (92%), Gaps = 24/1284 (2%)
Strand=Plus/Plus
Query 29 AAACGTTTTCGCCGAAGAAGAAAGAGCAAAAACATGAGGAGCGATGATCTTTACATCACC 88
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1 AAACGTTTTCGCCGAAGAAGAAAGAGCCAAAACATGAGGAGCGACGATCTTTACATCACC 60
Query 89 ACCGTCCCTTGTTTCTTCAAATGTCCAATTTCACTTGATGTGATGAAATCTCCGGTGAGT 148
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 61 ACCGTCCCTTGTTTCTTCAAGTGTCCGATTTCACTTGATGTGATGAAATCTCCGGTGAGT 120
Query 149 CTCTCCACCGGCGTTACATACGACCGAGTTAGCATCCAACGTTGGCTCGATGATGGTAAC 208
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 CTCTCCACCGGCGTTACATACGACCGAGTTAGCATCCAACGTTGGCTCGATGGTGGTAAC 180
Query 209 AATACTTGTCCCGCGACGATGCAGATTCTTCAGAACAAAGAATTCGTACCTAACCTAACT 268
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AATACTTGTCCCGCCACGATGCAGATTCTTCAGAACAAAGAATTCGTACCTAACCTAACA 240
Query 269 CTTCACCGTCTCATTGATCACTGGTCCGACTCCATCAACCGTCGAGCCGATTCTGAGTCT 328
|| |||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||
Sbjct 241 CTCCACCGTCTCATTGATCTCTGGTCCGACTCCATCAACCGTCGTGCCGGTTCTGAGTCT 300
Query 329 CCGGAATCCGATACTCCGACGCGAGACGAAATTAACGCTGCGATTGAGAGATTCCGGATC 388
|||||||| ||||||| ||||||||||||| |||||||||||||||| | |||||||
Sbjct 301 CCGGAATCAAATACTCCCTCGCGAGACGAAATCAACGCTGCGATTGAGAAAATCCGGATT 360
Query 389 GAGAATG---A-T--G-C-T-CGTTCGAAGATTCTCCGGTTCGCGAGAGAATCTGATGAG 439
||||||| | | | | | | ||||||||||||||||||||||| |||||||||||||
Sbjct 361 GAGAATGATAATTGCGACGTACTTTCGAAGATTCTCCGGTTCGCGAAAGAATCTGATGAG 420
Query 440 AACAGAGAGTTTCTCGCCGGGAAAGATGATTTCGTAGCG-ATGCTTGTGGATCTCA-T-T 496
|||||||||||||||||||| |||||||||||||||| | |||||||||||||||| | |
Sbjct 421 AACAGAGAGTTTCTCGCCGGAAAAGATGATTTCGTAG-GTATGCTTGTGGATCTCATTAT 479
Query 497 ---A-GCGATTCCAGAAACTTCTCTGATTCTCAATTGCTACTCGTTGGAGAAGCGGTGAA 552
| |||||||||| ||||||| | |||||||||| ||||||||||||||||||||||
Sbjct 480 CCAATTCGATTCCAGACACTTCTCGGGTTCTCAATTGATACTCGTTGGAGAAGCGGTGAA 539
Query 553 GATTCTGAGCATGATTCGTCGGAAAATCTTCGATCGGAGACGGTTATCGAATCTGATCTT 612
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GATTCTGAGCATGATTTGCCGGAAAATCTTCGATCGGAGACGGTTATCGAATCTGATCTT 599
Query 613 AACGAACGGTGGTGATTGCTTGACTTCCTTCTTCCTATTGATTAAACGCGGGAATCCAAA 672
| | |||||||| ||||||||||| ||||||||||||||||||||| |||||||||| ||
Sbjct 600 ATCCAACGGTGGCGATTGCTTGACGTCCTTCTTCCTATTGATTAAAAGCGGGAATCCTAA 659
Query 673 ATTGAAGATCGATTGCTCCGCCGTGCTTGAGTTTATCGCCGTCGACGCAGAGTCAAAGCT 732
||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 660 ATTGAAGATCGATTGTTCCGCCGTGCTTGAGTTTATCGCCGTCGATGCCGAGTCAAAGCT 719
Query 733 TATAATCGCCAAGGGAGAAGGATTGGTCACCGAGATTATTAAATTGATAAGCTCAGATTC 792
|||||||||| || |||| ||||| |||| ||||||||| ||| |||||||||||||||
Sbjct 720 TATAATCGCCGAGAGAGACGGATTAGTCATCGAGATTATGGAATCGATAAGCTCAGATTC 779
Query 793 CGACTCAAGCTTAATCGAAGCGAATTTATCTTTATTAATCGCGATTGCGTCTTCAAAACG 852
|| ||||||||||||||||||| |||||| || ||||||||||||||||||||||||||
Sbjct 780 AGATTCAAGCTTAATCGAAGCGAGTTTATCCTTGTTAATCGCGATTGCGTCTTCAAAACG 839
Query 853 CGTGAAACTCGCATTAATCAGAGAAAAGCTAGTCACGAAACTCACGAGTTTGTTAACAGA 912
|||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 840 CGTGAAACTCTCATTAATCAGAGAGAAGCTAGTCACGAAGCTCACGAGTTTGTTAACAGA 899
Query 913 TCCAACTACGAGCGTTTCAGTGACGGAAAAATGCTTAAAGCTTCTCGAAGCTATTTCGTC 972
|||||| ||||||||||||||||| || |||||| |||| |||||||||||| |||||||
Sbjct 900 TCCAACAACGAGCGTTTCAGTGACAGAGAAATGCCTAAAACTTCTCGAAGCTTTTTCGTC 959
Query 973 TTGTAAAGAAGGTCGATCGGAGATTTGTGATGGTGTGTGCGTGGAGACGGTGGTGAATAA 1032
||| |||||||||||||||||||| || || |||| |||||||||||||||||| || ||
Sbjct 960 TTGCAAAGAAGGTCGATCGGAGATATGCGACGGTGCGTGCGTGGAGACGGTGGTTAAGAA 1019
Query 1033 GCTGATGAAAGTGTCGACGGCGGCGACTGAACACGCCGTTACGGTTTTGTGGAGCGTCTG 1092
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1020 GCTGATGAAAGTATCGACGGCGGCGACTGAACACGCCGTCACGGTTTTGTGGAGCGTCTG 1079
Query 1093 TTATCTTTTCAAGGAAAAGAAGGCGCAAGATGCCGTTATT-AGAATTAACGGCGTTACGA 1151
|||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct 1080 TTATCTTTTCAAGGAAAAGAAGGCGCAAGATGCCGTTATTAAG-ACTAACGGCGTTACGA 1138
Query 1152 AGATACTGTTACTTTTACAGAGTAATTGCTCGCTTACCGTTAGGCATATGCTAACGGATC 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 AGATACTGTTACTTTTACAGAGTAATTGCTCGCTTACCGTTAGGCATATGCTAACGGATC 1198
Query 1212 TTCTTAAGGTGTTCAAGGTGAACTCAAGATCTTGCCTTTCGGTATAC-GAAACCAAAACG 1270
|||||||||| || ||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1199 TTCTTAAGGTCTTGAAGGTGAACTCAAGATCTTGCCTTT----ATACCGAAACCAAAACG 1254
Query 1271 ACACATATTATGCCGTTTTGATTA 1294
||||| ||||||||||||||||||
Sbjct 1255 ACACACATTATGCCGTTTTGATTA 1278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52412177120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5