BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G09805.1

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg940442 jgi|Araly1|940442|scaffold_600986.1                        455    9e-128


> Ahg940442 jgi|Araly1|940442|scaffold_600986.1
Length=354

 Score =  455 bits (246),  Expect = 9e-128
 Identities = 280/297 (94%), Gaps = 0/297 (0%)
 Strand=Plus/Plus

Query  1    ATGTCTTCTCGAAGCCACCGATCAAGAAAATATCAACTCACGAGAACAATTCCTATTCTT  60
            ||| |||||||||||||  ||||||||| ||||||||||||||||||||| ||||| |||
Sbjct  23   ATGCCTTCTCGAAGCCAAAGATCAAGAACATATCAACTCACGAGAACAATCCCTATACTT  82

Query  61   GTTCTTCTTCTTGTCCTTTTGAGTTGCTGCAATGGAGCAAGAACCACGAACGTCTTCAAC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  83   GTTCTTCTTCTTGTCCTTTTGAGTTGCTGCAATGGAGCAAGAACCACGAACGTCTTCAAC  142

Query  121  ACAAGCTCGCCACCCAAACAAAAGGACGTCGTTTCGCCACCTCATGATCATGTCCATCAT  180
            || |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| |
Sbjct  143  ACGAGCTTGCCACCCAAACAAAAGGATGTCGTTTCGCCACCTCATGATCATGACCATCGT  202

Query  181  CAAGTACAAGATCACAAAAGTGTACAGTTCTTGGGGTCCCTGCCACGTCAGTTTCCGGTT  240
            ||||||||||||||||| ||||||||||||||||| || || ||||||||||||||||||
Sbjct  203  CAAGTACAAGATCACAAGAGTGTACAGTTCTTGGGATCACTTCCACGTCAGTTTCCGGTT  262

Query  241  CCAACTTCTGGTCCTTCCAGAAAACATAACGAAATCGGTTTAAGTAGTACTAAGACT  297
            ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  263  CCAGCTTCTGGTCCTTCCAGAAAACATAACGAAATCGGTTTAAGTAGTACTAGGACT  319



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10530942564


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5