BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09810.1
Length=1700
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487803 jgi|Araly1|487803|fgenesh2_kg.6__937__AT5G09810.1 2518 0.0
Ahg474065 jgi|Araly1|474065|fgenesh2_kg.1__4019__AT1G49240.1 1055 0.0
Ahg342019 jgi|Araly1|342019|fgenesh1_pg.C_scaffold_3001782 1042 0.0
Ahg321462 jgi|Araly1|321462|fgenesh1_pm.C_scaffold_4001519 1027 0.0
> Ahg487803 jgi|Araly1|487803|fgenesh2_kg.6__937__AT5G09810.1
Length=1570
Score = 2518 bits (1363), Expect = 0.0
Identities = 1519/1590 (96%), Gaps = 28/1590 (2%)
Strand=Plus/Plus
Query 5 aaaaaTAAAAGAGTGAG-AAAAATCGT-AGAGCTATATATTCGCACATGTACTCGTTTCG 62
||||||||||||||||| ||||||| | || ||||||||||||||||| |||||||||||
Sbjct 1 AAAAATAAAAGAGTGAGAAAAAATCCTCAGGGCTATATATTCGCACATATACTCGTTTCG 60
Query 63 CTTTCCTTAGTGTTAGCTGCTGCCGCTGTTGTttctcctccatttctctatctttctctc 122
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 CTTTCCTCAGTGTTAGCTGCTGCCGCTGTTGTTTCTCCTCCATTTCTCTCTCTTTCTCTC 120
Query 123 tcgctgcttctcgaatcttctgtatcatcttcttcttcttcAAGTGAAAAATGGCCGATG 182
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 TCGCTGCTTCTCGAATCTTCTGTATCATCTTCTTCTTCCTCAAGTGAAAAATGGCCGATG 180
Query 183 GTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGGCTGGTTTTG 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGGCTGGTTTTG 240
Query 243 CTGGTGATGATGCCCCGAGAGCAGTGTTCCCAAGTATTGTTGGTCGTCCTAGGCACACTG 302
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 241 CTGGTGATGATGCCCCGAGAGCAGTGTTCCCAAGTATTGTTGGGCGTCCCAGGCACACTG 300
Query 303 GTGTCATGGTTGGTATGGGTCAGAAAGATGCTTACGTTGGTGATGAAGCTCAGTCCAAGA 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTGTCATGGTTGGTATGGGTCAGAAAGATGCTTACGTTGGTGATGAAGCTCAGTCCAAGA 360
Query 363 GAGGTATCCTCACTCTGAAGTATCCAATCGAACATGGTATTGTAAGTAACTGGGATGACA 422
||||||| |||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 361 GAGGTATTCTCACTCTGAAGTATCCAATCGAACATGGTATCGTTAGCAACTGGGATGACA 420
Query 423 TGGAAAAGATATGGCATCACACTTTCTACAACGAGCTTCGTGTTGCCCCTGAGGAGCACC 482
|||||||||| |||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 421 TGGAAAAGATCTGGCATCACACTTTCTACAATGAGCTTCGTGTGGCACCTGAGGAGCACC 480
Query 483 CAGTTCTACTCACAGAGGCACCTCTTAACCCTAAAGCTAACAGGGAGAAGATGACTCAGA 542
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CGGTTCTTCTCACAGAGGCACCTCTTAACCCTAAAGCTAACAGGGAGAAGATGACTCAGA 540
Query 543 TCATGTTTGAGACATTCAATGTCCCTGCCATGTATGTTGCCATTCAGGCCGTTCTTTCTC 602
|||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 541 TCATGTTTGAGACATTTAATGTTCCTGCCATGTATGTTGCCATTCAGGCTGTTCTTTCTC 600
Query 603 TCTATGCCAGTGGTCGTACAACCGGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACA 662
| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 601 TATACGCCAGTGGTCGTACAACCGGTATTGTGCTCGACTCTGGTGATGGTGTGTCTCACA 660
Query 663 CTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGG 722
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 661 CTGTGCCAATCTACGAGGGGTATGCTCTTCCCCATGCTATCCTTCGTCTTGATCTTGCGG 720
Query 723 GTCGGGATCTCACAGACTCACTCATGAAGATTCTCACTGAGAGAGGTTACATGTTCACCA 782
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GTCGGGATCTCACAGACTCCCTCATGAAGATTCTCACTGAGAGAGGTTACATGTTCACCA 780
Query 783 CTACCGCAGAACGGGAAATTGTCCGTGACATAAAGGAGAAACTTGCTTATGTCGCTCTTG 842
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CAACCGCAGAACGGGAAATTGTCCGTGACATAAAGGAGAAACTTGCTTATGTCGCTCTTG 840
Query 843 ACTACGAGCAAGAGCTAGAGACAGCCAAGAGCAGTTCTTCAGTGGAGAAGAACTACGAGC 902
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ACTACGAGCAAGAGCTGGAGACAGCCAAGAGCAGTTCTTCAGTGGAGAAGAACTACGAGC 900
Query 903 TACCTGATGGACAAGTCATAACCATCGGAGCTGAGAGATTCCGTTGTCCTGAGGTTCTGT 962
|||| |||||||||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct 901 TACCCGATGGACAAGTCATCACCATCGGAGCTGAGAGATTCCGTTGCCCTGAAGTTCTGT 960
Query 963 TCCAGCCATCGCTCATCGGAATGGAAGCTCCTGGAATCCATGAAACAACTTACAACTCCA 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TCCAGCCATCGCTCATCGGAATGGAAGCTCCTGGAATCCATGAAACAACTTACAACTCCA 1020
Query 1023 TCATGAAATGTGATGTCGATATCAGGAAGGATCTCTATGGAAACATCGTTCTCAGTGGTG 1082
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1021 TCATGAAATGTGATGTCGATATCAGGAAGGATCTCTATGGAAACATCGTCCTCAGTGGTG 1080
Query 1083 GTTCCACCATGTTCCCAGGAATTGCTGACCGTATGAGCAAAGAGATCACCGCTCTTGCAC 1142
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1081 GTTCCACCATGTTCCCAGGAATTGCTGACCGTATGAGCAAAGAGATCACTGCGCTTGCAC 1140
Query 1143 CTAGCAGCATGAAGATCAAGGTGGTTGCACCGCCAGAGAGAAAATACAGTGTCTGGATCG 1202
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1141 CTAGCAGCATGAAGATCAAGGTGGTGGCACCGCCAGAGAGAAAATACAGTGTCTGGATCG 1200
Query 1203 GAGGATCAATCCTTGCATCCCTCAGCACCTTCCAACAGATGTGGATTTCAAAGAGTGAGT 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1201 GAGGATCAATCCTTGCATCCCTCAGCACCTTCCAACAGATGTGGATTTCAAAGAGCGAGT 1260
Query 1263 ACGATGAGTCAGGTCCATCGATTGTTCACAGGAAATGCTTCTAAGTGTGTCTTGTCTTAT 1322
|||||||||| ||||||||||||||||||||||||||||||||| | || |
Sbjct 1261 ACGATGAGTCGGGTCCATCGATTGTTCACAGGAAATGCTTCTAA-T----CT-G------ 1308
Query 1323 CTGGTTCGTGGTGGTGAGTTTGTTACaaaaaaaTCTATTTTCCCTAGTTGAGATGGGAAT 1382
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1309 --G-TTCGTGGTGGTGAGTTTGTTACAAAA---TCTATTTTCCCTAGTTGAGATGGGAAC 1362
Query 1383 TGAACTATCTGTTGTTATGTGGAttttattttcttttttctctttAGAACCTTATGGTTG 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 TGAACTATCTGTTGTTATGTGGATTTTATTTTCTTTTTTCTCTTTAGAACCTTATGGTTG 1422
Query 1443 TGTCAAGAAGTCTTGTGTACTTTAGTTTTATATCTCTGTTTTATCTCTTCTATTTT-CTT 1501
| ||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||
Sbjct 1423 TCTCAAGAAGTCTTGTGTACTTTAGTTTTATCTCTCTGTTTT--CTCTTCTATTTTTCTT 1480
Query 1502 TAGGATGCTTGTGATGA--TGCTG-ttttttttt-GTCCCTAAGCaaaaaaa-TATCATA 1556
||||||||||||||||| ||||| ||||||||| |||| |||||||||||| |||||||
Sbjct 1481 TAGGATGCTTGTGATGAGATGCTGGTTTTTTTTTTGTCCTTAAGCAAAAAAAATATCATA 1540
Query 1557 TTATATTTGGTCCTTGGTTCAtttttttgg 1586
|||||||||||||||||||||||| |||||
Sbjct 1541 TTATATTTGGTCCTTGGTTCATTTCTTTGG 1570
> Ahg474065 jgi|Araly1|474065|fgenesh2_kg.1__4019__AT1G49240.1
Length=1618
Score = 1055 bits (571), Expect = 0.0
Identities = 961/1149 (84%), Gaps = 28/1149 (2%)
Strand=Plus/Plus
Query 173 ATGGCCGATGG-TGAGGATATTCAGCC-ACTTGTCTGTGACAATGGAACTGGAATGGTGA 230
|||||||| || ||| || ||||| || | |||||||||||||||| ||||||||||| |
Sbjct 179 ATGGCCGA-GGCTGATGACATTCAACCTA-TTGTCTGTGACAATGGTACTGGAATGGTTA 236
Query 231 AGGCTGGTTTTGCTGGTGATGATGC-CCCGAGAGCAGTGTTCCCAAGTATTGTTGGTCGT 289
||||||| || ||||| |||||||| ||| ||||| || ||||| ||| ||||||| ||
Sbjct 237 AGGCTGGATTCGCTGGAGATGATGCTCCC-AGAGCGGTTTTCCCCAGTGTTGTTGGCCGA 295
Query 290 CCTAGGCA-CACTGGTGTCATGGTTGGTATGGGTCAGAAAGATGCTTACGTTGGTGATGA 348
||||| || ||| |||||||||||||| ||| |||||||||||| || |||||||||||
Sbjct 296 CCTAGACACCAC-GGTGTCATGGTTGGGATGAATCAGAAAGATGCGTATGTTGGTGATGA 354
Query 349 AGCTCAGTCCAAGAGAGGTATCCTCAC-TCTGAAGTATCCAATCGAACATGGTATTGTAA 407
||| || ||||| |||||||||||||| | |||| || ||||| || |||||| |||| |
Sbjct 355 AGCACAATCCAAAAGAGGTATCCTCACGT-TGAAATACCCAATTGAGCATGGTGTTGTGA 413
Query 408 GTAACTGGGATGACATGGAAAAGATATGGCATCACACTTTCTACAACGAGCTTCGTGTTG 467
| ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| |||
Sbjct 414 GCAACTGGGATGACATGGAAAAGATTTGGCATCACACTTTCTACAATGAGCTCCGTATTG 473
Query 468 CCCCTGAGGAGCACCCAGTTCTACTCACAGAGGCACCTCTTAACCCTAAAGCTAACAGGG 527
| ||||| |||||||| || ||||| || ||||| ||||||||||| ||||| ||||| |
Sbjct 474 CTCCTGAAGAGCACCCGGTGCTACTTACCGAGGCTCCTCTTAACCCAAAAGCCAACAGAG 533
Query 528 AGAAGATGACTCAGATCATGTTTGAGACATTCAATGTC-CCTGCCATGTATGTTGCCATT 586
|||||||||||||||||||||||||||| || ||| || || || ||||| || ||||||
Sbjct 534 AGAAGATGACTCAGATCATGTTTGAGACCTTTAAT-TCTCCAGCTATGTACGTCGCCATT 592
Query 587 CAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCGGTATTGTGCTCGATTCTGGT 646
|| || ||||| || || || ||||||||||||||||| ||||||||| | || ||||||
Sbjct 593 CAAGCTGTTCTATCACTTTACGCCAGTGGTCGTACAACTGGTATTGTGTTGGACTCTGGT 652
Query 647 GATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTC--TTCCTCATGCTATCC 704
||||||||||||||||||||||||||||||||||| | | ||| |||| ||||||||||
Sbjct 653 GATGGTGTGTCTCACACTGTGCCAATCTACGAGGGTT-T-CTCACTTCCACATGCTATCC 710
Query 705 TTCGTCTTGATCTTGCGGGTCGGGATCTCACAGACTCAC-TCATGAAGATTCTCACTGAG 763
| ||||| || ||||| ||||| || ||||| || | || |||||||||| || || |||
Sbjct 711 TCCGTCTCGACCTTGCTGGTCGTGACCTCACTGATT-ACCTCATGAAGATCCTTACCGAG 769
Query 764 AGAGGTTACATGTTCACCACTACCGCAGAACGGGAAATTGTCCGTGACATAAAGGAGAAA 823
|||||||||||||||||||| || |||||||||||||| || | ||||| ||||||||
Sbjct 770 AGAGGTTACATGTTCACCACAACAGCAGAACGGGAAATCGTGAGAGACATCAAGGAGAAG 829
Query 824 CTTGC-TTATGTCGCTCTTGACTACGAGCAAGAGCTAGAGACAGCCAAGAGCAGTTCTTC 882
||| | || ||| ||| | ||||||||||||||| | ||||| | || | |||||| ||
Sbjct 830 CTTTCCTT-TGTTGCTGTGGACTACGAGCAAGAGATGGAGACCTCAAAAACCAGTTCCTC 888
Query 883 -AGTGGAGAAGAACTACGAGCTACCTGATGGACAAGTCATAACCATCGGAGCTGAGAGAT 941
| | ||||||||||| || |||| || |||||||| || || ||||| ||||||||||
Sbjct 889 CA-TCGAGAAGAACTATGAATTACCCGACGGACAAGTGATCACGATCGGTGCTGAGAGAT 947
Query 942 TCCGTTGTCCTGAGGTTCTGTTCCAGCCATCGCTCATCGGAATGGAAGCTCCTGGAATCC 1001
|| | || || || || || ||||||||||| | | |||||||||||| | || ||||
Sbjct 948 TCAGGTGCCCAGAAGTCCTTTTCCAGCCATCATTTGTTGGAATGGAAGCTGCAGGGATCC 1007
Query 1002 ATGAAACAACTTACAACTCCATCATGAAATGTGATGTCGATATCAGGAAGGATCTCTATG 1061
| || |||||||||||||| |||||||| |||||||| ||||||||||| || || || |
Sbjct 1008 ACGAGACAACTTACAACTCGATCATGAAGTGTGATGTTGATATCAGGAAAGACCTTTACG 1067
Query 1062 GAAACATCGTTCTCAGTGGTGGTTCCACCATGTTCCCAGGAATTGCTGACCGTATGAGCA 1121
| ||||| || |||||||||||| | || |||||| |||| ||||| ||||| |||||||
Sbjct 1068 GTAACATTGTGCTCAGTGGTGGTACAACTATGTTCTCAGGTATTGCAGACCGAATGAGCA 1127
Query 1122 AAGAGATCACCGCTCTTGCACCTAGCAGCATGAAGATCAAGGTGGTTGCACCGCCAGAGA 1181
|||||||||| |||||||| || |||||||||||||| ||||| || ||||| || ||||
Sbjct 1128 AAGAGATCACAGCTCTTGCCCCAAGCAGCATGAAGATTAAGGTCGTGGCACCACCCGAGA 1187
Query 1182 GAAAATACAGTGTCTGGATCGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAACAGA 1241
| || |||||||||||||| || || || |||||||| ||||||||||| ||||| ||||
Sbjct 1188 GGAAGTACAGTGTCTGGATTGGTGGTTCTATCCTTGCTTCCCTCAGCACTTTCCAGCAGA 1247
Query 1242 TGTGGATTTCAAAGAG-TGAGTACGATGA-GTCAGGTCCAT-CGATTGTTCACAGGAAAT 1298
||||||| || ||| | |||||| ||||| | |||||||| | ||||| ||||| ||||
Sbjct 1248 TGTGGATCTCTAAG-GCTGAGTATGATGAAG-CAGGTCCAGGC-ATTGTCCACAGAAAAT 1304
Query 1299 GCTTCTAAG 1307
|||||||||
Sbjct 1305 GCTTCTAAG 1313
> Ahg342019 jgi|Araly1|342019|fgenesh1_pg.C_scaffold_3001782
Length=1134
Score = 1042 bits (564), Expect = 0.0
Identities = 958/1148 (83%), Gaps = 28/1148 (2%)
Strand=Plus/Plus
Query 173 ATGGCCGATGG-TGAGGATATTC-AGCCACTTGTCTGTGACAATGGAACTGGAATGGTGA 230
|||||||| || ||| ||||||| | ||| | |||||||||||||| || || |||||||
Sbjct 1 ATGGCCGA-GGCTGATGATATTCAACCCA-TCGTCTGTGACAATGGTACCGGTATGGTGA 58
Query 231 AGGCTGGTTTTGCTGGTGATGATGCCCCGAGAGCAGTGTTCCCAAGTATTGTTGGTCGTC 290
|||| || ||||| || |||||||| || || || || ||||| ||| |||||||| | |
Sbjct 59 AGGCGGGATTTGCAGGAGATGATGCTCCAAGGGCTGTTTTCCCCAGTGTTGTTGGTAGGC 118
Query 291 CTAGGCA-CACTGGTGTCATGGTTGGTATGGGTCAGAAAGATGCTTACGTTGGTGATGAA 349
| || || || ||||||||||||||| ||| ||||| ||||| || ||||||||||||
Sbjct 119 CAAGACATCA-TGGTGTCATGGTTGGGATGAACCAGAAGGATGCATATGTTGGTGATGAA 177
Query 350 GCTCAGTCCAAGAGAGGTATCCTCA-CTCTGAAGTATCCAATCGAACATGGTATTGTAAG 408
||||| |||||||||||||| || | || |||||||||| || || |||||| |||| ||
Sbjct 178 GCTCAATCCAAGAGAGGTATTCTTACCT-TGAAGTATCCTATTGAGCATGGTGTTGTCAG 236
Query 409 TAACTGGGATGACATGGAAAAGATATGGCATCACACTTTCTACAACGAGCTTCGTGTTGC 468
||||||||||| ||||||||||| |||||||||||||||||||| ||||| || ||||
Sbjct 237 CAACTGGGATGATATGGAAAAGATCTGGCATCACACTTTCTACAATGAGCTGCGCATTGC 296
Query 469 CCCTGAGGAGCACCCAGTTCTACTCACAGAGGCACCTCTTAACCCTAAA-GCTAACAGGG 527
||||| |||||||| ||||| || || ||||| ||||||||||| ||| || ||||| |
Sbjct 297 TCCTGAAGAGCACCCTGTTCTTCTTACCGAGGCTCCTCTTAACCC-AAAGGCCAACAGAG 355
Query 528 AGAAGATGACTCAGATCATGTTTGAGACATTCAA-TGTCCCTGCCATGTATGTTGCCATT 586
||||||||||||| |||||||||||||| || || | |||| || |||||||| |||||
Sbjct 356 AGAAGATGACTCAAATCATGTTTGAGACCTTTAACTCTCCC-GCTATGTATGTCGCCATC 414
Query 587 CAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCGGTATTGTGCTCGATTCTGGT 646
|| || ||||| || || || ||||||||||||||||||||||||||||| |||||||||
Sbjct 415 CAAGCTGTTCTCTCCCTGTACGCCAGTGGTCGTACAACCGGTATTGTGCTGGATTCTGGT 474
Query 647 GATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTC--TTCCTCATGCTATCC 704
||||||||||||||||||||||||||||||||||| | | ||| |||| ||||| ||||
Sbjct 475 GATGGTGTGTCTCACACTGTGCCAATCTACGAGGGTT-T-CTCACTTCCACATGCCATCC 532
Query 705 TTCGTCTTGATCTTGCGGGTCGGGATCTCACAGACTCAC-TCATGAAGATTCTCACTGAG 763
| ||||| || ||||| ||||| || ||||| || | || |||||||||| || || |||
Sbjct 533 TCCGTCTCGACCTTGCTGGTCGTGACCTCACTGATT-ACCTCATGAAGATCCTTACAGAG 591
Query 764 AGAGGTTACATGTTCACCACTACCGCAGAACGGGAAATTGTCCGTGACATAAAGGAGAAA 823
|||||||||||||||||||| || ||||| ||||||||||| | ||||| ||||||||
Sbjct 592 AGAGGTTACATGTTCACCACAACAGCAGAGCGGGAAATTGTAAGAGACATCAAGGAGAAG 651
Query 824 CT-TGCTTATGTCGCTCTTGACTACGAGCAAGAGCTAGAGACAGCCAAGAGCAGTTCTTC 882
|| | ||| ||| ||| ||||||||||||| ||| | ||||| | |||| ||| |||||
Sbjct 652 CTATCCTT-TGTTGCTGTTGACTACGAGCAGGAGATGGAGACCTCAAAGACCAGCTCTTC 710
Query 883 -AGTGGAGAAGAACTACGAGCTACCTGATGGACAAGTCATAACCATCGGAGCTGAGAGAT 941
| | ||||||||||| || |||| ||||| |||||||| || ||||| ||||||||||
Sbjct 711 CA-TCGAGAAGAACTATGAATTACCCGATGGGCAAGTCATCACGATCGGTGCTGAGAGAT 769
Query 942 TCCGTTGTCCTGAGGTTCT-GTTCCAGCCATCGCTCATCGGAATGGAAGCTCCTGGAATC 1000
|| | || || || || || ||||||||| ||| | | |||||||||||| ||||||||
Sbjct 770 TCAGATGCCCAGAAGT-CTTGTTCCAGCCCTCGTTTGTGGGAATGGAAGCTGCTGGAATC 828
Query 1001 CATGAAACAACTTACAACTCCATCATGAAATGTGATGTCGATATCAGGAAGGATCTCTAT 1060
|| || ||||| || ||||| |||||||| |||||||| ||||||||||||||||| ||
Sbjct 829 CACGAGACAACCTATAACTCAATCATGAAGTGTGATGTGGATATCAGGAAGGATCTGTAC 888
Query 1061 GGAAACATCGTTCTCAGTGGTGGTTCCACCATGTTCCCAGGAATTGCTGACCGTATGAGC 1120
|| ||||| || ||||||||||| |||| |||||| | || ||||| ||||||||||||
Sbjct 889 GGTAACATTGTGCTCAGTGGTGGAACCACTATGTTCTCTGGTATTGCAGACCGTATGAGC 948
Query 1121 AAAGAGATCACCGCTCTTGCACCTAGCAGCATGAAGATCAAGGTGGTTGCACCGCCAGAG 1180
||||| ||||| || |||||||| |||||||||||||| ||||| |||||||| || ||
Sbjct 949 AAAGAAATCACAGCACTTGCACCAAGCAGCATGAAGATTAAGGTCGTTGCACCACCTGAA 1008
Query 1181 AGAAAATACAGTGTCTGGATCGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAACAG 1240
|| || ||||||||||||||||| || || || ||||| ||||||||||| ||||| |||
Sbjct 1009 AGGAAGTACAGTGTCTGGATCGGTGGTTCCATTCTTGCTTCCCTCAGCACATTCCAGCAG 1068
Query 1241 ATGTGGATTTCAAAGAG-TGAGTACGATGAGTCAGGTCCATCGA-TTGTTCACAGGAAAT 1298
|||||||| || ||| | |||||| |||||| |||||||| || |||||||||| ||||
Sbjct 1069 ATGTGGATCTCCAAG-GCTGAGTATGATGAGGCAGGTCCAG-GAATTGTTCACAGAAAAT 1126
Query 1299 GCTTCTAA 1306
||||||||
Sbjct 1127 GCTTCTAA 1134
> Ahg321462 jgi|Araly1|321462|fgenesh1_pm.C_scaffold_4001519
Length=1134
Score = 1027 bits (556), Expect = 0.0
Identities = 955/1147 (83%), Gaps = 30/1147 (3%)
Strand=Plus/Plus
Query 173 ATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAG 232
||||| |||||||| || ||||| || ||||| || |||||||||||||||||||| |||
Sbjct 1 ATGGCTGATGGTGAAGACATTCAACCTCTTGTTTGCGACAATGGAACTGGAATGGTTAAG 60
Query 233 GCTGGTTTTGCTGGTGATGATGCCCCGAGAGCAGTGTTCCCAAGTATTGTTGGTCGTCCT 292
|||||||||||||| |||||||| || |||| ||||| || |||||||| |||||||||
Sbjct 61 GCTGGTTTTGCTGGAGATGATGCACCTCGAGCTGTGTTTCCTAGTATTGTGGGTCGTCCT 120
Query 293 AGGCACACTGGTGTCATGGTTGGTATGGGTCAGAAA-GATGCTTACGTTGGTGATGAAGC 351
| ||||| ||||| |||||||| ||||| || ||| |||||||| ||||| ||||||||
Sbjct 121 CGTCACACCGGTGTGATGGTTGGGATGGGGCA-AAAGGATGCTTATGTTGGCGATGAAGC 179
Query 352 TCAGTCCAAGAGAGGTATCCTCACTCTGAAGTATCCAATCGAACATGGTATTGT-AAGTA 410
||| || ||| ||||||| | ||||| ||||| || || || ||||| ||||| || |
Sbjct 180 TCAATCGAAGCGAGGTATTTTAACTCTCAAGTACCCTATTGAGCATGGGATTGTCAA-CA 238
Query 411 ACTGGGATGACATGGAAAAGATATGGCATCACACTTTCTACAACGAGCTTCGTGTTGCCC 470
| |||||||| ||||| ||||| |||||||| |||||||| || ||||| |||||||| |
Sbjct 239 ATTGGGATGATATGGAGAAGATTTGGCATCATACTTTCTATAATGAGCTCCGTGTTGCTC 298
Query 471 CTGAGGAGCA-CCCAGTTCTACTCACAGAGGCACCTCTTAACCCTAAAGCTAA-CAGGGA 528
|||||||||| || | ||||||| || |||||||| |||||||| |||||||| | | ||
Sbjct 299 CTGAGGAGCATCCGA-TTCTACTTACCGAGGCACCGCTTAACCCGAAAGCTAATC-GTGA 356
Query 529 GAAGATGACTCAGATCATGTTTGAGACATTCAATGTCCCTGCCATGTATGTTGCCATTCA 588
|||||||||||| |||||||||||||| || |||| ||| || |||||||| || |||||
Sbjct 357 GAAGATGACTCAAATCATGTTTGAGACTTTTAATGCCCCGGCTATGTATGTGGCTATTCA 416
Query 589 GGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCGGTATTGTGCTCGATTCTGGTGA 648
||| ||||||||||| |||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 417 GGCTGTTCTTTCTCTTTATGCCAGTGGTCGTACAACCGGTATTGTGCTTGACTCTGGAGA 476
Query 649 TGGTGTGT-CTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTC 707
||||||| | |||||||| || ||||| ||||| ||||| ||||| ||||| ||||| |
Sbjct 477 TGGTGTGAGC-CACACTGTTCCTATCTATGAGGGTTATGCCCTTCCACATGCGATCCTAC 535
Query 708 GTCTTGATCTTGCGGGTCGGGATCTCACAGACT-CACTCATGAAGATTCTCACTGAGAGA 766
||||||||||||| ||||| || ||||| || | | || |||||||| || |||||| |
Sbjct 536 GTCTTGATCTTGCTGGTCGTGACCTCACGGA-TGCGCTGATGAAGATCCTAACTGAGCGT 594
Query 767 GGTTACATGTT-CACCACTACCGCAGAACGGGAAATTGTCCGTGACATAAAGGAGAAACT 825
|||||| | || |||||| || ||||| || ||||||||| | |||||||||||||| ||
Sbjct 595 GGTTAC-TCTTTCACCACCACAGCAGAGCGTGAAATTGTCAGAGACATAAAGGAGAAGCT 653
Query 826 T-GCTT-ATGTCGCTCTTGACTACGAGCAAGAGCTAGAGACAGCCAAGAGCAGTTCTTCA 883
| ||| || | ||||||||||||||||| ||||| ||||||||||| | ||| || |
Sbjct 654 TTGCTACAT-T-GCTCTTGACTACGAGCAGGAGCTCGAGACAGCCAAAACCAGCTCAGCT 711
Query 884 GTGGAGAAGAACTACGAGCTACCTGATGGACAAGTCATAACCATCGGAGCTGAGAGATTC 943
|| |||||||||||||||||||||||||| ||||| |||||||| ||| | ||| |||||
Sbjct 712 GTTGAGAAGAACTACGAGCTACCTGATGGGCAAGTGATAACCATTGGATCAGAGCGATTC 771
Query 944 CGTTGTCCTGAGGTTCTGTT-CCAGCCATCGCTCATCGGAATGGA-AGCTCCTGGAATCC 1001
||||| || |||||||| || ||||||||| | || || ||||| | | |||| ||||
Sbjct 772 CGTTGCCCAGAGGTTCT-TTACCAGCCATCTATGATTGGTATGGAGAA-TGCTGGTATCC 829
Query 1002 ATGAAACAACTTACAACTCCATCATGAAATGTGATGTCGATATCAGGAAGGATCTC-TAT 1060
||||||| || || |||||||| ||||| ||||||||||| ||||| ||||| || ||
Sbjct 830 ATGAAACCACCTATAACTCCATAATGAAGTGTGATGTCGACATCAGAAAGGA-CTTGTAC 888
Query 1061 GGAAACATCGTTCTCAGTGGTGGTTCCACCATGTTCCCAGGAATTGCTGACCGTATGAGC 1120
|| ||||| || ||||||||||| |||| |||||||||||||| || ||| | ||||||
Sbjct 889 GGTAACATTGTGCTCAGTGGTGGAACCACAATGTTCCCAGGAATCGCCGACAGAATGAGC 948
Query 1121 AAAGAGATCACCGCTCTTG-CACCTAGCAGCATGAAGATCAAGGTGGTTGCACCGCCAGA 1179
||||| ||||| ||| ||| | || ||||||||||||||||| || ||||| || |||||
Sbjct 949 AAAGAAATCACTGCT-TTGGCTCCAAGCAGCATGAAGATCAAAGTCGTTGCCCCTCCAGA 1007
Query 1180 GAGAAAATACAGTGTCTGGATCGGAGGATCAATCCTTG-CATCCCTCAGCACCTTCCAAC 1238
||| |||||| |||||||| ||||| || ||| ||| | |||||||| |||||||| |
Sbjct 1008 GAGGAAATACTCCGTCTGGATTGGAGGGTCTATC-TTGGCCTCCCTCAGTACCTTCCAGC 1066
Query 1239 AGATGTGGATTTCAAAGAGT-GAGTACGATGAGTCAGGTCCATCGATTGTTCACAGGAAA 1297
|||||||||| ||||| | || ||||| |||||||| || ||||||||||||||||||
Sbjct 1067 AGATGTGGATCGCAAAG-GCAGAATACGACGAGTCAGGCCCGTCGATTGTTCACAGGAAA 1125
Query 1298 TGCTTCT 1304
|||||||
Sbjct 1126 TGCTTCT 1132
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63763070130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5