BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09820.2
Length=1200
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487804 jgi|Araly1|487804|fgenesh2_kg.6__938__AT5G09820.2 1354 0.0
> Ahg487804 jgi|Araly1|487804|fgenesh2_kg.6__938__AT5G09820.2
Length=1081
Score = 1354 bits (733), Expect = 0.0
Identities = 934/1024 (91%), Gaps = 41/1024 (4%)
Strand=Plus/Plus
Query 5 TCTTCTTCTTCTACTTCTTATTAAGCTCCATTGGGTTTAGAGATTCTGGTGTATAAACTG 64
|||||||||||| ||||||| ||||||||||||| |||||||| | | |||
Sbjct 1 TCTTCTTCTTCTTCTTCTTAATAAGCTCCATTGGATTTAGAGA--------T-T---CTG 48
Query 65 CTAATGACGAGTAACCTTTTCCAGCCACCATCAATGGCAGCTTCACGAGGAGCAATCTCG 124
|||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 49 --AATGACAAGTAAGCTTATCCAGCCACCATCAATGGCAGCTTCACGAGGAGCAATCTCA 106
Query 125 AGAAGAACAGGAAACGTGAAAGTATTAGTCTCTTTCACCAGTTCTAATGGCAAAACGCTG 184
|||||| |||||||||||||||| |||||||| ||||||| ||||||| |||||||||||
Sbjct 107 AGAAGAGCAGGAAACGTGAAAGTGTTAGTCTCGTTCACCAATTCTAATAGCAAAACGCTG 166
Query 185 AGTTTTAGTGACAACTCATTTAGGCTCAGACCCATGTTCATCGGGAAAGTCACAGAACAG 244
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 167 AGTTTTAGTGATAACTCATTTAGGCTCAGACCCATGTTCATTGGGAAAGTCACAGAACAG 226
Query 245 AGTTCTTG-TTCCTCCCCAAATgaacaacaacaagatgaagaacaagaacaagaacaaga 303
|| || || |||||||||||||| ||| |||||||||||||||||||||
Sbjct 227 AGCTC-TGCTTCCTCCCCAAATG------AAC------AAGAACAAGAACAAGAACAAG- 272
Query 304 agagaTTACAGTTTCTCATATAAAAGAAGAGCTCTACGAAGCTCTCAAAGGGATCAATAG 363
| || |||||||| | || || ||||||||||||||||||||||||||||||||||||||
Sbjct 273 A-AG-TTACAGTTACCCAGATTAAAGAAGAGCTCTACGAAGCTCTCAAAGGGATCAATAG 330
Query 364 AGGGATATTCGGAGTTAAGTCGGATAAAAAGACAGAGATCGAGGGACTGGTGAAGCTTTT 423
||||||||||||||||||||| |||||||| ||||||||||||||| |||| ||||||||
Sbjct 331 AGGGATATTCGGAGTTAAGTCAGATAAAAAAACAGAGATCGAGGGATTGGTTAAGCTTTT 390
Query 424 GGAATGTCGGAATCCGACACCGGAGCCGACTGGAGAGTTAGACAAGATCGGAGGTTGCTG 483
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 391 AGAATGTCGGAATCCGACACCGGAGCCGACCGGAGAGTTAGACAAGATCGGAGGTTGTTG 450
Query 484 GAAACTCATTTACAGTACAATCACTGTATTGGGTTCTAAACGAACTAAATTGGGTCTTCG 543
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 451 GAAACTCATTTACAGTACAATCACTGTATTGGGTTCTAAAAGAACCAAATTGGGTCTTCG 510
Query 544 AGATTTCGTCTCTCTTGGTGATCTTCTTCAACAGATTGACATTGCTCAGGGCAAAACGGT 603
||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 511 AGATTTCGTCTCTCTCGGTGATCTTCTTCAACATATCGACATTGCTCAGGGCAAAACGGT 570
Query 604 CCATGTGTTGAAATTCGATGTCCGGGGATTGAATCTACTCGACGGCGAGTTTAGAATCGT 663
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 571 CCATGTGTTGAAATTCGATGTCCGGGGATTGAATCTACTCGACGGAGAGTTTAGAATCGT 630
Query 664 CGCTTCCTTCAAGATCTCGT-CCAAATCGAGTGTAGAGATTACTTATGAAAGCTCAACGA 722
|||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||
Sbjct 631 CGCTTCCTTCAAGATCTC-TAGCAAATCGAGTGTTGAGATTACTTATGAAAGCTCAACGA 689
Query 723 TCAAACCAGACCAGTTGATGAACATATTTAGGAAGAACATGGATCTTCTTTTGGGAATCT 782
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 TCAGGCCAGACCAGTTGATGAACATATTTAGGAAGAACATGGATCTTCTTTTGGGAATCT 749
Query 783 TCAACCCCGAGGGACTATTCGAGATTTCATACTTAGACGAAGATTTACAAGTAGGGAGAG 842
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 750 TCAACCCCGAGGGACTATTCGAGATTTCATATTTAGACGAAGATTTACAAGTAGGCAGAG 809
Query 843 ATGGGAAAGGGAATGTTTTTGTTTTGGAAAGAATAGAGAAACCTTAAA-TCTTTTATACC 901
||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 810 ATGGGAAAGGGAATGTTTTTGTTTTGGAAAGAACAGAGAAACCTTAAAATCTTT-ATACG 868
Query 902 AAAA--TGTTTACTGCAtttttttCAAACTCATTTCCATAAGAAGAAATTGCTTGTTTCT 959
|||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 869 AAAAAATGTTTACTTCATTTTC--CAAACTCATTTCCATAAGAAGAAATTGCTTGTTTCT 926
Query 960 CAAGAAAAttttcaattttttctttggtttgggttatgacca-tcagtatttcttctttc 1018
|||||||||||| || |||||||||||||| || ||| |||| |||||||||| ||||
Sbjct 927 CAAGAAAATTTTAAACTTTTTCTTTGGTTTTGGATAT-ACCAATCAGTATTTCAACTTTT 985
Query 1019 tttt 1022
||||
Sbjct 986 TTTT 989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44794427475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5