BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G09830.1

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg487805 jgi|Araly1|487805|fgenesh2_kg.6__939__AT5G09830.1          579    9e-165


> Ahg487805 jgi|Araly1|487805|fgenesh2_kg.6__939__AT5G09830.1
Length=364

 Score =  579 bits (313),  Expect = 9e-165
 Identities = 350/367 (95%), Gaps = 6/367 (2%)
 Strand=Plus/Plus

Query  13   ATTAGGGATTTCAATTTTTGTTTgagagagagagagagagaTGGTGACGAAGGAGCAAGT  72
            ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct  1    ATTAGGGATTTCAATTTTTGTTTGACAGAGAAAGAGAGAGATGGTGACGAAGGAGCAAGT  60

Query  73   CGAAGCTTCATTGACTTCGAAACTTAAGCCAATTCATCTCGAAGTCATTGACATATCTGG  132
            |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  61   CGAAGCTTCACTGACTTCGAAACTTAAGCCAATTCATCTTGAAGTCATTGACATATCTGG  120

Query  133  AGGTTGTGGTTCGAGTTTTGAAG-TGGAGGTTGTCTCTGAACAATTCGAAGGGAAGAGAT  191
            ||| |||||| ||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct  121  AGGATGTGGTGCGAGTTTTG-AGATCGAGGTTGTCTCTGAACAATTCGAAGGGAAGAGAT  179

Query  192  TGCTGGAGAGGCATCGTATGGTGAATGCTGCGCTAGAAGAAGAAATGAAAGAGATTCATG  251
            ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  180  TGCTGGAGAGGCACCGTATGGTGAATGCTGCGCTTGAAGAAGAAATGAAAGAGATTCATG  239

Query  252  CTCTCTCTATTAAGAAAGCTCAGACTCCACAACAATGGAAGCCACCATCACAAGACTCTG  311
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  CTCTCTCTATTAAGAAAGCTCAGACTCCACAACAATGGAAGCCACCATCACAAGACTCTG  299

Query  312  CAACCTTAACCAAAGATGCCTGAATTTCTGTTTTTTAAAAGCC-TT-GTGACAAAGAACA  369
            ||||||||||||||||||||||||||||| ||||||||  | | || |||||||||||||
Sbjct  300  CAACCTTAACCAAAGATGCCTGAATTTCT-TTTTTTAAG-GTCGTTTGTGACAAAGAACA  357

Query  370  GAGCATT  376
            |||||||
Sbjct  358  GAGCATT  364



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18314682720


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5