BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09840.1
Length=2805
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487806 jgi|Araly1|487806|fgenesh2_kg.6__940__AT5G09840.1 3816 0.0
Ahg951308 jgi|Araly1|951308|scaffold_803195.1 433 4e-120
> Ahg487806 jgi|Araly1|487806|fgenesh2_kg.6__940__AT5G09840.1
Length=2765
Score = 3816 bits (2066), Expect = 0.0
Identities = 2565/2801 (92%), Gaps = 54/2801 (2%)
Strand=Plus/Plus
Query 23 CTCCGACCATGAAGTTTGGATCTTTACCATCCAAATCCCTTCTCTTCCGCCTCTCTTCTT 82
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCCGACCATGAAATTTGGATCTATACCATCCAAATCCCTTCTCTTCCGCCTCTCTTCTT 60
Query 83 CCTCCACAACCCAATCTCACCGTCGAACAATTACCCTTT-TCATCACTAACATTCATTCC 141
||||| |||||||||||| ||||||||||| || ||||| || |||| ||||||||||||
Sbjct 61 CCTCCGCAACCCAATCTCCCCGTCGAACAACTA-CCTTTCTCGTCACCAACATTCATTCC 119
Query 142 TCTCCATTCTCCACCACAACCACCTCCGGCTCCAATTTCGTCTCCGGATCCAGCCATTCT 201
||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| |||
Sbjct 120 TCTCCATTCTCTACCACCACCGGCTCCGGCTCCAATTTCGTCTCCGGATCCAGCCACTCT 179
Query 202 CCCTCTCGACGTCCTCAGCAAGACGAAGAGTCCCGATCCGTTAGGGTTTCGGTCTGGTGG 261
|| ||||| |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 180 CCTTCTCGTCGTCCTCAGCAAGACGAAGAATCTCGATCCGTTAGGGTTTCGGTCTGGTGG 239
Query 262 GACTTCCTGAGCTGTAACTTACCTGTAGACACCAATGTCTACAAAGTAGCACAATCAATC 321
|||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||
Sbjct 240 GACTTCCTGAGCTGTAACTTACCTGTAGGTGTCAATGTCTTCAAAGTTGCACAATCAATC 299
Query 322 ACCGCCGCTATCAGAAACAGCGGAATCAAAGGACCAATCACAATCACAGCCTTCGGTGAC 381
||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 300 ACCGCCGCTATAAGAAATAGCGGAATCAAAGGTCCAATCACAATCACAGCCTTCGGTGAC 359
Query 382 GTTTTACAGCTCCCCAGATCAAACCAAGACGCTCTCTCCGCTACAGGAATCAGTCTCACT 441
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 360 GTTCTACAGCTCCCCAGATCAAACCAAGACGCTCTCTCCGCTACTGGAATCAGTCTCACT 419
Query 442 CATGTTCCT-AACGGTGGTAAGAACAGTGCTGATAGATCTCTAATCACAGATCTTATGTG 500
||||||||| || ||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 420 CATGTTCCTCAA-GGTGGTAAGAACAGTGCTGATAGATCTTTGATCACAGATCTTATGTG 478
Query 501 TTGGGTTTCTCAGAATCCACCACCAGCTCATCTTTTGCTAATCTCTAGTGATAAGGAGTT 560
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 479 TTGGGTTTCTCAGAATCCACCACCAGCTCATCTTTTGCTAATCTCTAGCGATAAAGAATT 538
Query 561 TGCAAGTGTGTTACATAGATTGAGGATGAACAATTACAACATTTTGCTTGCGAGTAAATC 620
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 539 CGCAAGTGTGTTACATAGATTGAGGATGAGCAATTACAACATTTTGCTTGTGAGTAAATC 598
Query 621 ATCAGCTCCTGGTGTTTTGTGTAGTGCTGCTTCTATTATGTGGGATTGGGATGCTTTGAT 680
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 599 ATCTGCTCCTGGTGTTTTGTGTAGTGCTGCTTCGATTATGTGGGATTGGGATGCTTTGAT 658
Query 681 TAAAGGAGAGTGTGTTACTGGTAAGCATTTTAATCAGCCTCCTGATGGTCCTTATAACTC 740
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CAAAGGAGAGTGTGTTAGTGGTAAGCATTTTAATCAGCCTCCTGATGGTCCTTATAACTC 718
Query 741 TTGGTATGGTCACTATAGGATTCCTCTTCTTGATCCATTTGCTATTGCTACCACTACTGA 800
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 719 TTGGTATGGTCACTATAGGATTCCTCTTCTTGATCCATTTGCAATTGCTACCACTACTGA 778
Query 801 GCAATCTTCGTCTAGTGTGAAAATCGAAGAACTATCCGAGTCT-G-T--GAAT-T-CGAA 854
|||| |||||||||||||||||||||||||||||||||||| | | || | | |||
Sbjct 779 GCAA---TCGTCTAGTGTGAAAATCGAAGAACTATCCGAGTCTAGTTCGGAGTCTGTGAA 835
Query 855 -T-G-CTGTTGTTAACCTTCGTCCTATTCCAAAAGAAGTTGTTGATAAGATTCGTTCGAT 911
| | || |||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 836 TTCGAATGCTGTTAACCTTCGTCCTATTCCAAAAGAAGTTGTTGACAAGATTCGTTTGAT 895
Query 912 AGTGAGTTTATATCCCAAGGGGGCTGCCATTACAGAACTACGTGCTGAGCTGAGTAAGAG 971
| |||||||||||||||||||||| ||||| |||||||||||||||||||| | ||||||
Sbjct 896 ATTGAGTTTATATCCCAAGGGGGCAGCCATAACAGAACTACGTGCTGAGCTTATTAAGAG 955
Query 972 CAACTTGGCTATTGATAAAGATTTCTATGGACATAAGAAGTTTTCGAAGTTTCTTTTATC 1031
||| || || |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 956 CAATTTAGCAATTGATAAAGATTTCTATGGACATAAGAAGTTTTCGAAGTTTCTGCTATC 1015
Query 1032 CATGCCAGATATCTTACAGGTTACTACAG-TAAGTGAAGGCTTGTTTATGATTCGGGCTG 1090
||||||||||||||||| |||| |||||| | ||||| ||||||||||| |||| ||||
Sbjct 1016 CATGCCAGATATCTTACGGGTTGCTACAGCT-AGTGACGGCTTGTTTATTATTCATGCTG 1074
Query 1091 TTACCGAAAAGAAGCCTCCGATGCGGCTTGATTCTAGTCCTCGTTTGTCTACTGCTGTTG 1150
| ||||||||||| ||||| ||||| ||||||||||||||| | ||||||||||||||||
Sbjct 1075 TCACCGAAAAGAATCCTCCTATGCGACTTGATTCTAGTCCTGGCTTGTCTACTGCTGTTG 1134
Query 1151 ATCAGAAGATTAAAGATAAGGAAACTGTTAATGCTCCATCACCAAAGCTAATTAGCGATG 1210
||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||
Sbjct 1135 ATCAGAAGATTAAAGATAAGGAAACTGCTAATGCTCCATCGCCAAAACTAATTAGCGATG 1194
Query 1211 TAGAGCTTGCTGCTGAAAGAAGAAGAGATGGCTTACTTGGAAAGAAGCAGGAAAAGGTAT 1270
|||| |||||||||| ||||||||||||||||| | |||||||||||||||| || |||
Sbjct 1195 TAGAACTTGCTGCTGTAAGAAGAAGAGATGGCTCAGTTGGAAAGAAGCAGGACAACGTAA 1254
Query 1271 TGGAGAGTGATAAAATTGTTAAAGAAGAATCATCAGAGAGTTCTCAAGACCCAATTCTGG 1330
|||||||||| |||||||| ||||| ||||||||||||||||| ||||| |||||||||
Sbjct 1255 TGGAGAGTGACAAAATTGTCAAAGAGGAATCATCAGAGAGTTCCCAAGAGGCAATTCTGG 1314
Query 1331 TCGGCCAGAAGGATGTTAAGGCAAATGTTAAACCCGTCGAGACGAATCAAGTCGCTCTTG 1390
||||||||||||| ||||||||||||| |||| |||| ||||||||||||||||||||||
Sbjct 1315 TCGGCCAGAAGGACGTTAAGGCAAATGATAAATCCGTGGAGACGAATCAAGTCGCTCTTG 1374
Query 1391 TTGCGTGGAGTGATTCGTCCATGGAAGATGGCTTTTTTCAAAAGCTAAAAAGACTGTGGT 1450
||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 1375 TTGCGTGGAGTGATTCGTCCATGGAAGATGGTTTTTTTCAGAAGCTAAAAAGACTATGGT 1434
Query 1451 ATGGTTCACCTGAGATGGAATTAGAGCATCTCCCAGAAATGAAGAGCGTTTCTGGAAGTG 1510
||||||||||||||||| ||| |||||||||||||| | || | | ||||| |
Sbjct 1435 ATGGTTCACCTGAGATGAAATCAGAGCATCTCCCAG--A--AA-A-----TATGGAA-T- 1482
Query 1511 GAGACACA-CATAGAGAGGATAATGACTTAAAGTCATCAAGTCAGGGAAGTGGAAACAAA 1569
||| || | | | || || || ||||| | || ||||||||| |||||
Sbjct 1483 CAGA-GCATC-T-CCCA-GA-AAAGA---AAAGT-GT---TTC-TGGAAGTGGAGACAAA 1529
Query 1570 CATAAA-GAGGATAAGGACTTAAAGTCATCGAGTCAGGGAACTG-TGCCCATGTCTCAAA 1627
||||| || |||||||||||||||||||||| ||||||||||| | |||||||||| ||
Sbjct 1530 TATAAAGGA-GATAAGGACTTAAAGTCATCGATTCAGGGAACTGAT-CCCATGTCTCGAA 1587
Query 1628 TCTCACCTTCTTTCGTTGCTGAGTCGGTCGATGAGGTAAAAGTTGGAGCTGATGACGTAG 1687
||||||||| |||||||||||||| ||||| | ||||||||| ||||||| ||| ||||
Sbjct 1588 CCTCACCTTCCTTCGTTGCTGAGTCTGTCGAGGGGGTAAAAGTAGGAGCTGCTGAAGTAG 1647
Query 1688 ACAGTAAAGATAAAGATGCAAGTCCAGGCTTTTTAGGTCGCCTTTTGAAGAGTTTCAAGT 1747
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1648 ACAGTAAAGATAAAGATGCAAGTCCAGGCTTTTTAGGTCGCCTTTTGAATACTTTCAAGT 1707
Query 1748 TCTGGGGAAAGAATACAAAGTCTAGCAAAGACTCTAGTGGGAATCAGGAGCTTGTCAATG 1807
||||||||||||| ||| | ||||||||||| ||||||||||||||| || |||| ||
Sbjct 1708 TCTGGGGAAAGAACACAGCCTGTAGCAAAGACTGTAGTGGGAATCAGGAACTGGTCAGTG 1767
Query 1808 TTGATTCTCAAGTACAAGACATATTTGCAAAAGAGTATTTTTGGAGTGATATTGAATCTT 1867
||||||||||||||| ||||| |||| |||||||| ||| |||| |||| |||||||||
Sbjct 1768 TTGATTCTCAAGTACGCGACATTTTTGAAAAAGAGTCTTTCTGGAATGATGTTGAATCTT 1827
Query 1868 TCATTAATTCTCCAAGAGGCTTTGCTATAGTATCTCACTCGAGGACAAGGGAGGTGATGG 1927
|||| |||||||||||||||||||||||||||||||| || | |||||||||||||||||
Sbjct 1828 TCATCAATTCTCCAAGAGGCTTTGCTATAGTATCTCATTCAAAGACAAGGGAGGTGATGG 1887
Query 1928 CTAAAAATGTGCAGGAGGAAGGGCCTTCGTGTCTCAGACTGCTCGATGAATCAAGCATGC 1987
|||||||| ||||||| |||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1888 CTAAAAATCTGCAGGAAGAAGGGCCTTTGTGTCTCAGACTGCTCGATGAATCAATCATGC 1947
Query 1988 TTCATTTAGTTACTTTGCTAATATCAGAAAAGAAATGGATTGAAGAAACCCCATCTTCTT 2047
|||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1948 TTCATTTAGTTACTTTACTAATATCAGATAAGAAATGGATTGAAGAAACCCCCTCTTCTT 2007
Query 2048 CTTTACCATTCAGAATCATCAAAGGATCTAGCCCTGGCCACCGTCATGCTTCAAACGGTT 2107
|| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 2008 CTCTACCATTCAGAATCATCAAAGGATCTAGCCCTGGCCACCGCCATCCTTCAAACGGTT 2067
Query 2108 TGAGCTCAATCTTCTCGGATTCTTCAAAATCACAGTGGCAGAAACAAAATGGTGAGAAAA 2167
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 2068 TGAGCTCAATCTTCTCGGATTCTTCAAAATCACAGTCGCAGAAACAAAATGGGGAGAAAA 2127
Query 2168 GCGGCAAGAACGTTGCTCATGCTGGAGTTTCTGTTGGTTCTGTGGACCGGAAAGAGCTGG 2227
| || |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 2128 GGGGAAAGAACGTTGCTCATGCTGGAGTTTCTGTTGGTTCTATGGACCGGAAACAGCTGG 2187
Query 2228 AAAGATACAAAAGTAATGCAATAGCGGATTGTCAGAAGATGATAAAGAAGATAACAGAGG 2287
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2188 AAAGATACAAAAGTAATGCAATAGCGGATTGTCAGAAGCTGATAAAGAAGATAACAGAGG 2247
Query 2288 AACACCCTGAAGGGTATAGCCTGATTCGTTTCAGGAAAGACTTCTTAGAGGAGTATGGGT 2347
||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 2248 AACACCCTGAAGGTTATAGCCTGATTCGTTTCAGGAAAGAATTCTTAGAGGAATATGGGT 2307
Query 2348 ACCATTTAGCGGTTGACAAGCTCGGTTACGACAACCTGCAGTCTCTGATTCGAGTCATGC 2407
|||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||
Sbjct 2308 ACCATTTAGCGGTTGACAAGCTTGGTTACGAAAACCTACAGTCTCTAATTCGAGTCATGC 2367
Query 2408 ATGGAGTGAGAATAGCATCTGGATACATCTTTCCTTCAACTCCTTCACCAAATGCCAAGT 2467
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 2368 ATGGAGTGAGAATAGCATCTGGATACATCCTTCCTTCAACTCCTTTACCAAATGCCAAGT 2427
Query 2468 CAAAAGAAGATGATTCGGACTTGGCATTCGCAGAACTTGGTCCAGTTTCTGATACAACAA 2527
||||||||||||||||||||||| |||||| |||||| ||||||||||||||| ||||||
Sbjct 2428 CAAAAGAAGATGATTCGGACTTGACATTCGAAGAACTCGGTCCAGTTTCTGATGCAACAA 2487
Query 2528 CTACCCACCCGACGACCAAAAAGCTTCCAGTATATGAACCATCACTCTCAGAGGATGAAG 2587
|||| ||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||
Sbjct 2488 CTACGCACCCGACGACCAAAAAGCTTGCAGTATATGAACCATCTCTCTCCGAGGATGAAG 2547
Query 2588 AAGATTCTGGTTCagagagagataacccagagaagaagaagcaacagatgatgagtaaag 2647
||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||| ||
Sbjct 2548 AAGATTCTGGTTCAGAGAGGGATAACCCGGAGAAGAAGAAGCAAGAGATGATGAGTAGAG 2607
Query 2648 aaggtaaagagagCTCGTTATTGCAAATTCTGGATTCTTATTACACAAATAAAGATGGAG 2707
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2608 AAGGTAAAGAGAGCTCGTTATTGCAAATTCTGGATTCTTATTACACAAACAAAGATGGAG 2667
Query 2708 AATT---GAAGGAGAATCCGGTGGAGAGGAAGCTTGTAAGCAACGGTAGAAAGCAAAAGC 2764
|||| ||||||||| || | ||||| | |||||||||||||||||||||||||||||
Sbjct 2668 AATTTAAGAAGGAGAAACCAGAGGAGA--A-GCTTGTAAGCAACGGTAGAAAGCAAAAGC 2724
Query 2765 CTACAAAGACGTATTCTTTTGTGAAAGATTCAGAAGTCTAG 2805
|||||||||| ||||||||||| ||||||||||||||||||
Sbjct 2725 CTACAAAGACATATTCTTTTGTTAAAGATTCAGAAGTCTAG 2765
> Ahg951308 jgi|Araly1|951308|scaffold_803195.1
Length=2624
Score = 433 bits (234), Expect = 4e-120
Identities = 625/804 (78%), Gaps = 66/804 (8%)
Strand=Plus/Plus
Query 295 AATGTCTACAAAGTAGCACAATCAATCACCGCCGCTATCAGAAACAGCGGAATCAAAGGA 354
||||||| |||| | || ||| | ||||| |||| | ||| ||||||||||||||||
Sbjct 252 AATGTCTTCAAATTGGCTCAAACCATCACATCCGCCGTTAGATTCAGCGGAATCAAAGGA 311
Query 355 CCAATCACAATCACAGCCTTCGGTGACGTT-TTACAGCTCCCCAGATCAAACCAAGACGC 413
|| ||||| |||||||||||||| ||| || | |||||| ||||| | |||||||| ||
Sbjct 312 CCCATCACCATCACAGCCTTCGGAGAC-TTAATCCAGCTCTCCAGAACTAACCAAGAAGC 370
Query 414 TCTCTCCGCTACAGGAATCAGTCTCACTCATGTTCCT-AACGGTGGTAAGAACAGTGCTG 472
||||| || || ||||||| |||||||||||||||| || ||||| ||||||||| | |
Sbjct 371 TCTCTTTGCCACTGGAATCAATCTCACTCATGTTCCTCAA-GGTGGGAAGAACAGTACGG 429
Query 473 ATAGATCTCTAATCACAGATCTTATGTGTTGGGTTTCT-CAGAATCCACCACCAGCTCAT 531
|||||||| | || |||||||| |||| |||||||| | ||||||||||| || ||||||
Sbjct 430 ATAGATCTTTGATTACAGATCTAATGTATTGGGTTT-TACAGAATCCACCTCCTGCTCAT 488
Query 532 CTTTTGCTAATCTCTAGTGATAAGGAG-TTT-GC-AAGTGTGTTACATAGATTGAGGATG 588
| || || ||| ||||||| | ||| ||| || || |||| |||||||||||||||||
Sbjct 489 ATCTTCCTTATCACTAGTGA-CA-GAGATTTCGCGAA-TGTGCTACATAGATTGAGGATG 545
Query 589 AACAATTACAACATTTTGCTTGCGAG-TA--AATCATCAGCT-C-C-TGGTGTTTTGTGT 642
|||||||||||||||||||| ||| | || || | || | | | |||||| ||||||
Sbjct 546 AACAATTACAACATTTTGCTCGCGGGGTACGAAG-A--AGGTACGCATGGTGTATTGTGT 602
Query 643 AGTGCTGCTTCTATTATGTGGGATTGGGATGCTTT-GATTAAAGG-AGAGTGTGTTACTG 700
||||||||||| ||||||||||||||||||||||| | ||| ||| | | | || |
Sbjct 603 AGTGCTGCTTCGATTATGTGGGATTGGGATGCTTTAG-TTAGAGGGAAAAA-TCCAACGG 660
Query 701 GTAAGCATTTTAATCAGCCTCCTGATGGTCCTTATAACTCTTGGTATGGTCACTATAGGA 760
|||| ||| |||||||| || |||||||||||||| |||||||||||||||||||| |
Sbjct 661 GTAAATATTACAATCAGCCACCGGATGGTCCTTATAATTCTTGGTATGGTCACTATAGAA 720
Query 761 TTCCTCTTCTTGATCCATTTGC-T-AT-TGCTACCACTACTGA---GCAA-T--CTTCGT 811
|||||||||||| |||||||| | || | | |||||||| | |||| | ||| ||
Sbjct 721 CTCCTCTTCTTGACCCATTTGCCTCATCTTCCACCACTACCAACAAGCAAATATCTT-GT 779
Query 812 -CTAGTGTGAAAATCGA-AGAACTA-TCCGAGTCTG--TG-AATT-CGA--A-TGCTG-T 860
|||||||||||| | | ||| | | || || | | || | ||| | | | | |
Sbjct 780 ACTAGTGTGAAAACC-ATAGAGTTGGTT-GAATC-GAATTCAAATGCGACGAATTCGGGT 836
Query 861 TGTT--AAC-CTT--CGTCCTATTCCAAAAGAAGTTGTTGATAAGATTCGTTCGATAGTG 915
| || || ||| | ||||||||| |||||||||||| | ||||| ||| ||| ||
Sbjct 837 TCTTCTAAGGCTTGTCTTCCTATTCCGAAAGAAGTTGTTAAGCAGATTGGTTTGATTTTG 896
Query 916 AGTTTATATCCCAAGGGGGCTGCCATTACAGAACTACGTGCTG-AGCTGAGTAAGAGCAA 974
|||| ||||| ||||| || ||||||||||||| |||| | ||||||| ||||| ||
Sbjct 897 AGTTGGTATCCTAAGGGAGCACCCATTACAGAACTCCGTGA-GCAGCTGAGAAAGAGGAA 955
Query 975 CTTGGCTA-TT-GATAAAGA-TTTCTATGGACATAAGAAGTTTT-CGAAGTTTCTTTTAT 1030
| | | || |||| ||| ||| || ||| |||||| ||||| ||| |||||| ||||
Sbjct 956 AGTA-C-ACTTAGATAGAGACTTT-TACGGATATAAGA-GTTTTTCGAGGTTTCTGTTAT 1011
Query 1031 CCATGCCAGAT-ATCTTACAGGTT 1053
| ||||| || ||||||||||||
Sbjct 1012 CTATGCC-GAAGATCTTACAGGTT 1034
Score = 152 bits (82), Expect = 1e-35
Identities = 175/219 (80%), Gaps = 10/219 (5%)
Strand=Plus/Plus
Query 1814 CTCAAGTACAAGACATATTTGCAAAAGAGTATTTTTGG-AGTGATATTGAATCTTTCATT 1872
|||||||| | || | ||||| ||||| | ||||||| || ||||||||||||||||||
Sbjct 1651 CTCAAGTAGATGATGTTTTTGCTAAAGATTCTTTTTGGAAG-GATATTGAATCTTTCATT 1709
Query 1873 AATTCTCCAAGAGGCTTTG-C-TATAGTATCTCACTCGAGGA-CAAGGGAGGTGATGGCT 1929
||||||||||||||||| | | | | || |||||||| || | |||| || | ||||||
Sbjct 1710 AATTCTCCAAGAGGCTTCGTCCT-T-GTTTCTCACTCAAG-ATCAAGAGAAGCAATGGCT 1766
Query 1930 AAAAATGTGCAGGAGGAAGGGCCTTCGTGTCTCAGACTGCTCGATGAATCAAGCATGCTT 1989
|| ||| | |||| ||||| ||||| | ||||| || |||| ||| ||||| ||||||
Sbjct 1767 AAGAATCTTAAGGAAGAAGGACCTTCATCTCTCAAACCGCTCAATGTATCAAAAATGCTT 1826
Query 1990 CATTTAGT-TACTTTGCTAATATCAGAAAAGAAATGGAT 2027
||||||| | | || |||||||||| |||||||||||
Sbjct 1827 GATTTAGTAT-CAATGTTAATATCAGAGAAGAAATGGAT 1864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105852790855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5