BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09860.1
Length=2183
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940448 jgi|Araly1|940448|scaffold_600992.1 3068 0.0
> Ahg940448 jgi|Araly1|940448|scaffold_600992.1
Length=1836
Score = 3068 bits (1661), Expect = 0.0
Identities = 1774/1827 (97%), Gaps = 14/1827 (1%)
Strand=Plus/Plus
Query 159 GTGGAAGCTGGTTCAT-TGAGAAATAATGGATGCATTTAGAGATGCTATATTGCAGCGAG 217
|||||||||||| ||| | || ||||||| |||||||||||||||||||||| ||||
Sbjct 2 GTGGAAGCTGGTACATCT-AG----AATGGATACATTTAGAGATGCTATATTGCAACGAG 56
Query 218 CTCCAATTGAAACCTTTGCACTCAAGACTGTTCAACACTTTATACAACCTCAGAAACAAA 277
|||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 57 CTCCTATTGAAAGCTTTGCACTCAAGACTGTTCAACAGTTTATACAACCTCAGAAACAAA 116
Query 278 CAAAGTTGGCTCAAGATGAAAACCAAATGCTTGAAAACATGCTCCGGACATTGCTGCAGG 337
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 CAAAGTTGGCCCAAGATGAAAACCAAATGCTTGAAAACATGCTCCGGACATTGCTGCAGG 176
Query 338 AGCTAGTGGCTGCTGCTGCGCAATCAGGGGAGCAAATTATGCAGTATGGTCAGTTGATTG 397
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 177 ACCTAGTGGCTGCTGCTGCGCAATCAGGAGAGCAAATTATGCAGTATGGTCAGTTGATT- 235
Query 398 ACgatgatgatgatgatgatgatATACATGGACAGATTCCTCATCTTCTAGATGTTGTGC 457
||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct 236 --GATGATGATGATGAT-A--ATATACATGGCCAGATTCCTCATCTTCTAGATGTTGTGC 290
Query 458 TTTATCTTTGTGAGAAAGAGCATGTAGAAGGTGGCATGATATTCCAGCTGCTGGAGGATT 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 TTTATCTTTGTGAGAAAGAGCATGTAGAAGGTGGCATGATATTCCAGCTGCTGGAGGATT 350
Query 518 TGACCGAAATGTCTACTATGAAAAACTGTAAAGATGTTTTCGGTTATATTGAAAGCAAAC 577
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 351 TGACCGAAATGTCTACTATGAAAAATTGTAAAGATGTTTTCGGTTATATTGAAAGCAAAC 410
Query 578 AAGATATATTGGGCAAGCAAGAGCTTTTTGCACGCGGAAAACTTGTCATGTTGAGGACTT 637
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 411 AAGATATATTGGGCAAGCAAGAGCTGTTTGCACGCGGAAAACTTGTAATGTTGAGGACTT 470
Query 638 GCAACCAACTTCTCCGCCGACTCTCAAAGGCCAATGATGTTGTATTCTGTGGAAGGATTC 697
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 GCAACCAACTTCTCCGGCGACTCTCAAAGGCCAATGATGTTGTATTCTGTGGAAGGATTC 530
Query 698 TTATGTTTTTGGCTCACTTTTTTCCGTTATCTGAGCGCTCAGCCGTCAATATAAAAGGTG 757
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 531 TCATGTTTTTGGCTCACTTTTTTCCGTTATCTGAGCGCTCAGCCGTGAATATAAAAGGCG 590
Query 758 TTTTTAATACATCTAATGAAACCAAATATGAAAAAGATCCTCCAAAAGGCATTTCTGTAG 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TTTTTAATACATCTAATGAAACCAAATATGAAAAAGATCCTCCAAAAGGCATTTCTGTAG 650
Query 818 ATTTCAACTTCTACAAGACATTTTGGAGTTTACAGGAGTATTTCTGTAATCCCGCTTCTC 877
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 ATTTCAACTTCTATAAGACATTTTGGAGTTTACAGGAGTATTTCTGTAATCCCGCTTCTC 710
Query 878 TTACTTCCGCATCTACCAAGTGGCAGAAATTTTCATCCAGTTTGGCGGTTGTTTTAAACA 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 TTACTTCCGCATCTACCAAGTGGCAGAAATTTTCATCCAGTTTGGCGGTTGTTTTAAACA 770
Query 938 CCTTTGATGCTCAACCACTAAGCGAAGAAGAGGGAGAGGCTAATAGTTTGGAGGAAGAGG 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 CCTTTGATGCTCAACCACTAAGCGAAGAAGAGGGAGAGGCTAATAGTTTGGAGGAAGAGG 830
Query 998 CAGCAACTTTTAATATAAAGTACCTAACAAGTAGTAAATTGATGGGTTTAGAGTTAAAGG 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 CAGCAACTTTTAATATAAAGTACCTAACAAGTAGTAAATTGATGGGTTTAGAGTTAAAGG 890
Query 1058 ATTCGAGTTTCCGACGACATATTCTTCTCCAGTGCCTCATTATGTTTGATTATCTAAGGG 1117
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 891 ATTCGAGTTTCCGACGACATATTCTTCTCCAGTGCCTCATTATGTTTGATTATCTGAGGG 950
Query 1118 CACCAGGGAAGAACGACAAAGATCTGCCATCTGAAACCATGAAGGAAGAACTTAAGTCAT 1177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 CACCAGGGAAGAACGACAAAGATCTGCCATCTGAAACCATGAAGGAAGAACTTAAGTCAT 1010
Query 1178 GTGAGGATCGTGTAAAGAAATTGCTTGAGATCACTCCGCCTAAAGGGAAAGAATTCCTCC 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 GTGAGGATCGTGTAAAGAAATTGCTTGAGATCACTCCGCCTAAAGGGAAAGAATTCCTCC 1070
Query 1238 GTGCAGTTGAGCATATACTGGAGCGCGAAAAGAATTGGGTCTGGTGGAAACGTGATGGAT 1297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 GTGCAGTTGAGCATATACTGGAGCGCGAAAAGAATTGGGTCTGGTGGAAACGTGATGGAT 1130
Query 1298 GTCCACCATTTGAAAAGCAACCGATAGATAAGAAATCACCTAATGCAGGGCAAAAGAAAC 1357
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 GCCCACCATTTGAAAAGCAACCGATAGATAAGAAATCACCTAATGCAGGGCAAAAGAAAC 1190
Query 1358 GGAGACAAAGATGGAGATTGGGAAATAAAGAACTCTCCCAACTTTGGAGATGGGCAGATC 1417
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1191 GGAGACAAAGATGGAGATTGGGCAATAAAGAACTCTCCCAACTTTGGAGATGGGCTGATC 1250
Query 1418 AAAATCCGAATGCTTTGACTGATTCTCAACGCGTGCGAACCCCTGATATTGCAGACTACT 1477
||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 1251 AAAATCCGAATGCTTTGACTGATTCTCAACGTGTCCGAACCCCTGACATTGCAGACTACT 1310
Query 1478 GGAAACCATTAGCAGAAGATATGGATCCATCAGCTGGCATAGAAGATGAGTACCATCATA 1537
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1311 GGAAACCATTAGCAGAAGATATGGATCCATCAGCTGGCATAGAAGATGAGTATCATCATA 1370
Query 1538 AAAACAACAGAGTTTACTGCTGGAAAGGTCTTCGGTTTACAGCTCGGCAAGACCTTGAAG 1597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 AAAACAACAGAGTTTACTGCTGGAAAGGTCTTCGGTTTACAGCTCGGCAAGACCTTGAAG 1430
Query 1598 GATTTTCTAGGTTTACTGAAATGGGAATCGAAGGAGTTGTCCCAGTTGAACTATTGCCGC 1657
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 GATTTTCTAGGTTTACCGAAATGGGAATCGAAGGAGTTGTCCCAGTTGAACTATTGCCGC 1490
Query 1658 CTGAGGTCCGGTCCAAATACCAAGCTAAACCAAACGAAAAAGCCAAACGAGCGAAGAAAG 1717
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1491 CTGAGGTCCGGTCCAAATACCAAGCTAAACCGAACGAAAAAGCCAAACGAGCTAAGAAAG 1550
Query 1718 AAGAAACCAAAGGTGGATCTCATGAAACAGAGGGAAACCAGATTGGTGTTTCTAATAGTG 1777
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1551 AAGAAGCCAAAGGTGGATCTCAGGAAACAGAGGGAAACCAGATTGGTGTTTCTAATAGTG 1610
Query 1778 AAGCTGAAGCTGAAGGAGGAAGGGGTGATGCAGAGACGATGGAGAGTGATGCTATTGCAG 1837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 AAGCTGAAGCTGAAGGAGGAAGGGGTGATGCAGAGACGATGGAGAGTGATGCTATTGCAG 1670
Query 1838 ACACTCCTACGCCTGAGGAACAGCAAAGACTCGGTGGTTCTGATACAGAAAACGGTCAAG 1897
|||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||
Sbjct 1671 ACACTCCTACGCCTGAGGAACAACAAAGACTCGGTGTTTCTGACACAGAAAACGGTCAAG 1730
Query 1898 AGGCCGGTCAAATCGAAGACGGAGAGACAGAAGAAGCTGGTCTGATGGACACTGATCTTG 1957
|||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1731 AGGCTGGTCAAATCGAAGACGCAGAGACAGAAGAAGCTGGTTTGATGGACACTGATCTTG 1790
Query 1958 ATCATCCTC-CTATGCCCGTCTCATGA 1983
|||| || | ||||||| |||||||||
Sbjct 1791 ATCACCC-CACTATGCCTGTCTCATGA 1816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82160658465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5