BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G09876.1

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg940450 jgi|Araly1|940450|scaffold_600994.1                        409    1e-113


> Ahg940450 jgi|Araly1|940450|scaffold_600994.1
Length=357

 Score =  409 bits (221),  Expect = 1e-113
 Identities = 307/346 (89%), Gaps = 15/346 (4%)
 Strand=Plus/Plus

Query  1    ATGGAGAAGATCCAATCAACGAAGAACGAGAGTAATAAACGGAGGAGACGAGAAGAGATG  60
            ||||||||||||||||| |  ||||| |||| ||||||||| |||||| |||| ||||||
Sbjct  23   ATGGAGAAGATCCAATC-A--AAGAAGGAGACTAATAAACGAAGGAGAAGAGACGAGATG  79

Query  61   ATAACGGAGATAGAGATGGAGGCTGCTCAACAGTTGATGCATCTAAGCGATGAAGAGAAA  120
            ||||||||||||||||||||||| || |||||||||||||| |||||||| |||||||| 
Sbjct  80   ATAACGGAGATAGAGATGGAGGCAGCACAACAGTTGATGCAACTAAGCGACGAAGAGAAT  139

Query  121  AATATGGATATCATCAAGAAGAAGAAGACAATCGAAGAAATATTCGGTAAAGATGATAGT  180
            |||||  |||||||||||||||||||||| ||||| |||||||| ||||||||||||| |
Sbjct  140  AATATCAATATCATCAAGAAGAAGAAGACGATCGAGGAAATATTTGGTAAAGATGATATT  199

Query  181  CATGATCAAG---ATCAATGCACGGAAGAAATGGTGATGTTGAGAGTAATATCATCATTg  237
            ||||||||||   ||||||||||| ||||||||||| ||||||||||||| |||||   |
Sbjct  200  CATGATCAAGATCATCAATGCACGAAAGAAATGGTGGTGTTGAGAGTAATGTCATC---G  256

Query  238  aagaaggagaagaagaagaagTATAGGACCATTGAGAGCATTTACATGGCAACGAGACCT  297
            ||| |   ||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct  257  AAG-A--CGAAGAAGAAGAAGTATAGGACGATTGAGAGCATTTACATGGCGACGAGACCT  313

Query  298  ATCAGGGTCGTGATTAGATGAAT-AAACATTTAACTCTCTTTAGGT  342
            ||||||||||||||||||||| | ||||||| |||| || ||||||
Sbjct  314  ATCAGGGTCGTGATTAGATGA-TGAAACATT-AACTATCCTTAGGT  357



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14766212943


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5