BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09890.2
Length=1984
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487812 jgi|Araly1|487812|fgenesh2_kg.6__946__AT5G09890.2 3275 0.0
Ahg946955 jgi|Araly1|946955|scaffold_703184.1 161 1e-38
Ahg930357 jgi|Araly1|930357|scaffold_302814.1 126 5e-28
> Ahg487812 jgi|Araly1|487812|fgenesh2_kg.6__946__AT5G09890.2
Length=1988
Score = 3275 bits (1773), Expect = 0.0
Identities = 1928/1999 (96%), Gaps = 26/1999 (1%)
Strand=Plus/Plus
Query 1 TCTCTGGTAAATAGTCCACGTTCTGGCGTCTTTGGGATTTCACCAACACCGTGACAGCTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTGGTAAATAGTCCACGTTCTGGCGTCTTTGGGATTTCACCAACACCGTGACAGCTC 60
Query 61 CTTAGATCTCTCCTCGATTACTTCCTTTTTAATTTCCATGGctctctaaaaatctctctc 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 CTTAGATCTCTCCTCGATTACTTCCTTTTTAATTTCCATGGCTCTCT-AAAATCTCTCTC 119
Query 121 tct-t-tctctctctct-TACT-T-GTA-TTG--TTACGA--TCTCTGCTTGAAGATTAT 170
||| | ||||||||||| | || | || ||| |||||| ||||||| |||||| |||
Sbjct 120 TCTCTCTCTCTCTCTCTCT-CTCTCTTACTTGTTTTACGATCTCTCTGCCTGAAGACTAT 178
Query 171 GGACGGCGCCGATGGAACCGTTCGCGTCAAGCCTGGTCGCGGATTCGAAACGGAGACGGA 230
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 179 GGACGGCGCCGATGGAACCGTTCGCGTCAAGCCTGGTCGCGGATTTGAAACGGAGACGGA 238
Query 231 TGTTGCGGTTTCGTCGCCAGTGACACGTCAGAAAGCTGCTGCAGCTAAGCAATTCATCGA 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TGTTGCGGTTTCGTCGCCAGTGACACGTCAGAAAGCTGCTGCAGCTAAGCAATTCATCGA 298
Query 291 GAATCATTATAAGAATTACTTGCAAGGCTTGCACGAACGAATGGAGAGACGCAGGGAGTT 350
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 299 GAATCATTATAAGAACTACTTGCAAGGCTTGCACGAACGAATGGAGAGACGCAGAGAGTT 358
Query 351 TCAGAGGAAAGTGCAAGAAGCTCAGTTACCTGTTGAGGAACAAGACGAGATGATGAGGAA 410
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 359 TCAGAGGAAAGTGCAAGAAGCTCAGTTACCGGTTGAGGAACAAGATGAGATGATGAGGAC 418
Query 411 TCTGGCTCGTCGTGAAACTGAGTATATGAGACTTCAGAGACGTAAAATTGGGATTGATGA 470
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TCTGGCACGTCGTGAAACCGAGTATATGAGACTTCAGAGACGTAAAATTGGGATTGATGA 478
Query 471 TTTTGAGCTTTTGACCGTTATTGGCAAAGGTGCCTTTGGTGAGGTTAGATTATGTCGTTT 530
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 479 CTTTGAGCTTTTGACCGTTATTGGCAAAGGTGCCTTTGGTGAGGTTAGATTATGCCGTTT 538
Query 531 GAGATCTACATCTGAAGTTTATGCCATGAAGAAATTGaaaaaaaCTGAGATGCTTAGCCG 590
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GAGATCTACATCTGAGGTTTATGCCATGAAGAAATTGAAAAAAACTGAGATGCTTAGCCG 598
Query 591 TGGACAGGTAGAGCATGTCAGGTCCGAGAGGAACTTACTTGCAGAAGTTGACAGCCGTTA 650
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TGGACAGGTTGAGCATGTCAGGTCCGAGAGGAACTTACTTGCAGAAGTTGACAGCCGTTA 658
Query 651 CATTGTAAAGCTTTTTTACTCTTTTCAAGATTCTGAATGTTTGTATCTTATCATGGAGTA 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CATTGTAAAGCTTTTTTACTCTTTTCAAGATTCTGAATGTTTGTATCTTATCATGGAGTA 718
Query 711 TTTACCTGGGGGTGACATCATGACACTACTCATGAGAGAAGACATTCTTTCTGAAGATGT 770
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 719 TTTACCTGGGGGTGACATCATGACTTTACTCATGAGAGAAGACATTCTTTCTGAAGATGT 778
Query 771 TGCCCGTTTTTATATTGCTGAGAGCATTCTTGCCATCCATTCAATTCATCAACACAACTA 830
|||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 779 TGCCCGTTTTTATATTGCGGAGAGCATTCTTGCTATCCATTCAATTCATCAACATAACTA 838
Query 831 TGTTCACAGGGACATCAAACCTGATAATTTGATACTAGACAAAAGTGGGCATTTGAAGCT 890
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 839 TGTTCACAGGGACATCAAACCTGACAATTTGATACTAGACAAAAGTGGTCATTTGAAGCT 898
Query 891 TTCAGATTTTGGTTTATGTAAGCCACTTGATGACAAGTATTCTTCATTGCTATTAGAAGA 950
||| |||||||| |||||||||||||| ||||| |||||||||||| |||||||||||||
Sbjct 899 TTCGGATTTTGGCTTATGTAAGCCACTAGATGATAAGTATTCTTCACTGCTATTAGAAGA 958
Query 951 CGATGAAATGTTGTCTCAGGATTCAGAGAACCAGTCAGGAAAATCAGACGCTGACAAAGC 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CGATGAAATGTTGTCTCAGGATTCAGAGAACCAGTCAGGAAAATCAGACGCTGACAAAGC 1018
Query 1011 ACCCTGGCAAATGCCTAAAGAGCAGTTACTGCAGTGGAAACGCAATCGCCGTGCATTGGC 1070
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1019 ACCCTGGCAAATGCCTAAAGAGCAGTTACTGCAATGGAAGCGCAATCGCCGTGCATTGGC 1078
Query 1071 TTATTCAACCGTTGGAACTCTTGATTACATGGCTCCAGAAGTACTCCTAAAGAAAGGATA 1130
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1079 TTATTCAACCGTTGGAACTCTGGATTACATGGCTCCAGAAGTACTGCTAAAGAAAGGATA 1138
Query 1131 TGGAATGGAATGTGATTGGTGGTCTCTCGGCGCAATTTTGTATGAGATGTTAGTTGGGTA 1190
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1139 TGGAATGGAATGTGATTGGTGGTCTCTCGGTGCAATTTTGTATGAGATGTTAGTTGGGTA 1198
Query 1191 TCCCCCATTCTGTTCTGATGACCCCCGTATAACATGCCGCAAGATAATTAATTGGAGGGT 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TCCCCCATTCTGTTCTGATGACCCCCGTATAACATGCCGCAAGATAATTAATTGGAGGGT 1258
Query 1251 ATGCTTGAAGTTCCCTGAAGAACCAAAAATATCAGATGAAGCCAGAGACTTGATTTGTCG 1310
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1259 ATGCTTGAAATTCCCTGAAGAACCAAAAATATCAGATGAAGCCAGAGACTTGATTGGTCA 1318
Query 1311 GTTGCTTTGTGATGTTGATTCAAGGTTGGGAACCAGAGGTGTTGAGGAGATAAAGTCGCA 1370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 GTTGCTTTGTGATGTTGATTCAAGGTTGGGAACCAGAGGTGTTGAGGAGATAAAGTCGCA 1378
Query 1371 TCCATGGTTCAAAGGCACCCCATGGGACAAACTGTATGACATGGAGGCAGCTTATAGACC 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TCCATGGTTCAAAGGCACCCCATGGGACAAACTGTATGACATGGAGGCAGCTTATAGACC 1438
Query 1431 CATTGTCGATGGAGAACTAGACACACAAAATTTTGAGAAGTTTCCTGAAGTTGAAGGATC 1490
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1439 CATTGTCGATGGAGAACTAGACACACAAAATTTTGAGAAGTTTCCTGAGGTTGAAGGATC 1498
Query 1491 ACCATCCGAAGCACCACAAGTTGGTCCTTGGAGAAAGATGTTGACGTCCAAGGACACCAA 1550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 ACCATCCGAAGCACCACAAGTTGGTCCTTGGAGAAAGATGTTGACGTCCAAGGACACCAA 1558
Query 1551 CTTCATAGGATTTACATTTAAGAAGTCAGACATCACAAGATCAATGGAAAGTTCAGGTAG 1610
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1559 CTTCATAGGATTTACATTTAAGAAGTCAGACATCACAAGATCAATGGAAAGTTCAGGT-G 1617
Query 1611 TGCAGACATGAAATCAAATGGATCAGGGGAAGCCCCGTCGTTGATATCATTGTTAGGTCG 1670
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 CG--GACATGAAATCAAATGGATCAGGGGAAGCCCCGTCGTTGATATCATTGTTAGGTCG 1675
Query 1671 GATCAATATGGAAGAAGGTGAAGGTGGTGAGTTAAACCACAAGACATAGGGAA-AA-TAC 1728
||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||
Sbjct 1676 GATCAATATGGAAGAAGGTGAAGGTGGTGAGTTAAACCACAAGACATAGAGAAGAAATAC 1735
Query 1729 AAATATTATTGATTTTTTATCCGCTTGCAGTTGTTTTGATCATTTGGCAGAGGCAATGGA 1788
||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||
Sbjct 1736 AAATATTATTGATTTTTTATCCGTTTGCAGTTGTTTTGATCATATGGCGGAGGCAATGGA 1795
Query 1789 GAGGCGATGGTAGTTTTTTAACCAGATCACTTATGATGGGGTTCATAAAAACTTCTATTT 1848
| | |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1796 G-G-CGATGGTAGTTTTTTAACCACATCACTTATGATGGG-TTCATAAAAACTTCTATTT 1852
Query 1849 CCt--tttttttttcttgtaacatatttgtttttttttCAATCTAAAAAAGAAACTGTAA 1906
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1853 CCCCCTTTTTTTTTCTTGTAACATATTTGTTTTTTTTTTAATCTAAAAAAGAAACTGTAA 1912
Query 1907 AGCATGGAAGAATAATTTCTGGAACATTTT-ACCCACAAGTTATCAAATACATCAAAAAA 1965
|||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||
Sbjct 1913 AGCATGGAAGAATAATTTCTTGAACATTTTTACCCACAAGTTATCAA-TACATCAAAA-- 1969
Query 1966 TGAAGCTCGCTTTTCTGCC 1984
|||||||||||||||||||
Sbjct 1970 TGAAGCTCGCTTTTCTGCC 1988
> Ahg946955 jgi|Araly1|946955|scaffold_703184.1
Length=1696
Score = 161 bits (87), Expect = 1e-38
Identities = 315/421 (75%), Gaps = 32/421 (8%)
Strand=Plus/Plus
Query 1069 GCTTATTCAACCGTTGGAACTCTTGATTACATGGCTCCAGAAGTACTCCT-AAAGAAAGG 1127
|||||||| || |||||||||| ||||||||| || |||||||| || || ||| || ||
Sbjct 963 GCTTATTCCACAGTTGGAACTCCTGATTACATTGCCCCAGAAGTTCTGCTGAAA-AAGGG 1021
Query 1128 ATATGGAATGGAATGTGATTGGTGGTCTCTCGGCGCAATTTTGTATGAGATG-TTAGTTG 1186
|||||||||||||||||||||||||||||| ||||| ||| ||||||| ||| || || |
Sbjct 1022 ATATGGAATGGAATGTGATTGGTGGTCTCTTGGCGCCATTATGTATGAAATGCTT-GTGG 1080
Query 1187 GGTATCCCCCATTCTGTTCTGATGACCCCC-GTATAACATGCCGCAAGATAATTAATTGG 1245
||| ||| ||||| | ||| ||||| || | | ||| || | |||||| | ||||||
Sbjct 1081 GGTTTCCGCCATTTTATTCAGATGATCCAATG-ACAACTTGTAGGAAGATAGTAAATTGG 1139
Query 1246 AGGGTATG-CTTGAAGTTCCCTGAAGAACCAAAAATATCAG-ATGAAGCCAGAG-A-CTT 1301
|| || |||||| ||||| || || | | ||||| | ||||||| || | |||
Sbjct 1140 AGAA-ATTACTTGAAATTCCCAGATGAGGTTAGACTATCACCA-GAAGCCA-AGGATCTT 1196
Query 1302 GATTTGTCGGTTGCTTTGTG-A-TGTTGATTCAAGG--TTGGGAACCAGAGGTGTTGAGG 1357
|||||| || | ||| || | |||||| ||| | |||| ||| | ||| | || |
Sbjct 1197 -ATTTGTAGGCT--TTTATGCAATGTTGAA-CAAAGACTTGG-AACAAAAGGAGCAGATG 1251
Query 1358 AGATAAAGTCG-CATCCATGGTTCAAAGGCACCCCATGGG-ACAAACTGTATGACATGGA 1415
| || ||| | || |||||||||| ||| ||| ||||| | ||| |||| | ||| |
Sbjct 1252 AAATTAAGG-GTCACCCATGGTTCAGAGGTACCGAATGGGGA-AAATTGTACCAAATGAA 1309
Query 1416 GGCAGC-TTATAGACCC-ATTGTCGATGGA-GAACTAGACACACAAAATTTTGAGAAGTT 1472
||| || || || ||| | ||| ||| | || ||||||| |||||||||||||| ||
Sbjct 1310 GGCTGCCTT-TATTCCCCAG-GTCAATG-ATGAGTTAGACACCCAAAATTTTGAGAAATT 1366
Query 1473 T 1473
|
Sbjct 1367 T 1367
> Ahg930357 jgi|Araly1|930357|scaffold_302814.1
Length=1748
Score = 126 bits (68), Expect = 5e-28
Identities = 119/144 (83%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 1069 GCTTATTCAACCGTTGGAACTCTTGATTACATGGCTCCAGAAGTACTCCTAAAGAAAGGA 1128
|||||||| || |||||||||| ||| || || ||||||||||| | | |||||||||
Sbjct 973 GCTTATTCTACAGTTGGAACTCCTGACTATATTGCTCCAGAAGTTTTGTTGAAGAAAGGA 1032
Query 1129 TATGGAATGGAATGTGATTGGTGGTCTCTCGGCGCAATTTTGTATGAGATG-TTAGTTGG 1187
||||||||||||||||||||||||||||| || || || ||||||| ||| || || ||
Sbjct 1033 TATGGAATGGAATGTGATTGGTGGTCTCTTGGTGCGATCATGTATGAAATGCTT-GTGGG 1091
Query 1188 GTATCCCCCATTCTGTTCTGATGA 1211
|| ||| ||||| | ||| |||||
Sbjct 1092 GTTTCCACCATTTTATTCAGATGA 1115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74580699710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5