BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09900.3
Length=1678
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487814 jgi|Araly1|487814|fgenesh2_kg.6__948__AT5G09900.1 2619 0.0
Ahg496691 jgi|Araly1|496691|fgenesh2_kg.8__2507__AT5G64760.1 1448 0.0
> Ahg487814 jgi|Araly1|487814|fgenesh2_kg.6__948__AT5G09900.1
Length=1681
Score = 2619 bits (1418), Expect = 0.0
Identities = 1587/1665 (95%), Gaps = 25/1665 (2%)
Strand=Plus/Plus
Query 1 GTTCAAGGGGTTGGGAACT-CTGCGAATTATCTGTGCTCAGCTACTCCCAAAAGctctct 59
||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||
Sbjct 1 GTTCAAGGGGTTGGGAACTCCTGCGATTTATCTGTGCTCAGCTACTCCC-AAAGCTCTCT 59
Query 60 catctctctcgtccgtctcctctttctcCATAGTTTAAAGCTTCGTCGTTCCGTCACCAG 119
|||||||||| | ||||||||| ||||||||||| ||||||||| | ||| ||||||||
Sbjct 60 CATCTCTCTC-T-CGTCTCCTCCTTCTCCATAGTCTAAAGCTTCTTTGTTTTGTCACCAG 117
Query 120 AATTTCAACTA------CTTTGAG-TTGATTCTCGTTGGATTTCTCACGATGGGAGACAG 172
| ||||||||| ||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 118 AGTTTCAACTACTCGTGCTTTGAGTTTGATTCTCGTTGGATTTTTCACGATGGGAGACAG 177
Query 173 CGGGAAGCTTGAGGCAACGATAGATCGGCTTCTGAATGAAGAGAAGCAGATGAGACTCGC 232
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CGGGAAGCTTGAGGCGACGGTAGATCGGCTTCTGAATGAAGAGAAGCAGATGAGACTCGC 237
Query 233 CGAAAACGTAGCCGGTACAAGGAAAGCCGCCACTGAGATTCTTCAGCTTTGTTTCGATGC 292
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 238 GGAAAACGTCGCCGGTACAAGGAAAGCCGCCACTGAGATTCTTCAGCTTTGTTTCGAAGC 297
Query 293 TAAGGATTGGAAACTTCTGAATGAGCAGATTCTCAATCTCTCTAAGAAACGTGGTCAGCT 352
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 298 TAAGGATTGGAAGCTTCTGAATGAGCAGATTCTCAATCTGTCTAAGAAACGTGGTCAGCT 357
Query 353 CAAACAGGCTGTGCAATCCATGGTGCAGCAAGCAATGCAGTATATCGATCAGACACCAGA 412
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 358 CAAACAGGCTGTGCAATCCATGGTGCAGCAAGCTATGCAGTATATTGATCAGACACCAGA 417
Query 413 CATTGAAACTCGGATAGAGCTTATCAAGACGCTGAACAATGTATCTGCTGGAAAGATATA 472
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 418 CATTGAAACTCGGATAGAGCTTATTAAGACATTGAACAATGTATCTGCTGGAAAGATATA 477
Query 473 TGTTGAAATCGAGAGGGCACGTCTCACCAAGAAACTTGCTAAGATTAAGGAAGAACAGGG 532
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 478 TGTTGAAATCGAGAGGGCACGCCTCACCAAGAAGCTTGCTAAGATTAAGGAAGAACAGGG 537
Query 533 TCAGATAGCTGAAGCTGCAGATCTTATGCAAGAAGTTGCTGTGGAGACATTTGGTGCTAT 592
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 538 TCAAATAGCTGAAGCTGCAGATCTTATGCAAGAAGTTGCTGTGGAGACATTTGGCGCTAT 597
Query 593 GGCAAAAACTGAGAAAATTGCATTTATCCTTGAACAAGTTCGCTTGTGCTTGGATCGTCA 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GGCAAAAACTGAGAAAATTGCATTTATCCTTGAACAAGTTCGCTTGTGCTTGGATCGTCA 657
Query 653 AGATTTTGTTCGTGCACAAATCTTATCTAGGAAGATCAATCCTAGAGTTTTTGACGCAGA 712
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 658 AGATTTTGTTCGTGCACAAATCTTATCTAGGAAGATCAATCCTAGAGTTTTTGATGCAGA 717
Query 713 TACaaaaaaaGATAAGAAGAAACCTAAGGAAGGTGATAACATGGTAGAAGAGGCTCCTGC 772
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 718 CACAAAGAAAGATAAGAAGAAACCTAAGGAAGGTGATAACATGGTAGAGGAGGCTCCTGC 777
Query 773 TGATATACCAACCCTT-TTGGAGCTTAAGCGAATTTACTACGAGCTTATGATTCGGTACT 831
||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 778 TGATATACCAA-CCTTGTTGGAGCTTAAGCGGATTTACTACGAGCTTATGATTCGGTACT 836
Query 832 ATTCTCATAACAATGAGTACATTGAAATCTGCCGTAGCTACAAGGCGATATATGATATCC 891
|| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 837 ATACTCATAACAATGAGTACCTTGAAATCTGCCGTAGCTACAAGGCGATTTATGATATCC 896
Query 892 CTTCAGTAAAAGAAACTCCGGAGCAGTGGATTCCGGTCCTGAGGAAGATCTGCTGGTTCT 951
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CTTCTGTAAAAGAAACACCGGAGCAGTGGATTCCGGTCCTGAGGAAGATCTGCTGGTTCT 956
Query 952 TGGTCTTGGCACCTCATGACCCAATGCAATCAAGCTTGCTCAATGCAACTCTGGAAGACA 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TGGTCTTGGCACCTCATGACCCAATGCAATCAAGCTTGCTCAATGCAACTCTGGAAGACA 1016
Query 1012 AGAATTTATCAGAAATCCCTGATTTCAAGATGCTTCTAAAACAGGTAGTGACAATGGAGG 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 AGAATTTATCAGAAATCCCTGATTTCAAGATGCTTCTAAAACAGGTAGTGACAATGGAGG 1076
Query 1072 TTATTCAATGGACATCTCTGTGGAACAAATACAAGGATGAGTTCGAGAAAGAGAAAAGCA 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TTATTCAATGGACATCTCTGTGGAACAAATACAAGGATGAGTTCGAGAAAGAGAAAAGCA 1136
Query 1132 TGATTGGAGGTTCTTTGGGTGACAAAGCTGGTGAAGATCTGAAACTGAGAATCATCGAAC 1191
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TGGTTGGAGGTTCTTTGGGTGACAAAGCTGGTGAAGATCTGAAACTGAGAATCATCGAAC 1196
Query 1192 ATGTAAAATATCCTCGTTGTCTCAAAGTACTACGCAAGGATAACCTTAAAGAGACTTGCC 1251
|| || || || | |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1197 AT--AATAT-TCTT-GTTGTCTCAAAGTATTACGCAAGGATAACCTTAAAGAGACTTGCC 1252
Query 1252 GAGCTTTTATGCCTGAGCATGGAGGAGGCGGAGAAGCATCTATCGGAGATGGTAGTGTCA 1311
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1253 GAGCTTTTATGCCTGAGCATAGAGGAGGCGGAGAAGCATCTGTCGGAGATGGTAGTGTCA 1312
Query 1312 AAAGCACTGATTGCAAAAATAGACAGACCATCTGGAATTGTGTGCTTCCAGATCGCAAAG 1371
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1313 AAAGCACTGATTGCAAAAATAGACAGACCATCAGGGATTGTGTGCTTCCAGATCGCAAAG 1372
Query 1372 GACAGCAACGAGATTCTAAACTCGTGGGCAGGGAATTTGGAGAAGCTTCTAGATCTTGTG 1431
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1373 GACAGCAACGAGATTCTAAACTCGTGGGCAGGGAATTTGGAGAAGCTTTTAGATCTTGTC 1432
Query 1432 GAAAAGAGTTGCCACCAAATTCACAAGGAAACCATGGTTCACAAAGCCGCTCTCAGACCT 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 GAAAAGAGTTGCCACCAAATTCACAAGGAAACCATGGTTCACAAAGCCGCTCTCAGACCT 1492
Query 1492 TGAAAACATGCG-GTCTTCTTCATGAAAACTT-TT-CAGGATCTTCTTCGTTGAGTTATT 1548
|||||||| | || | |||||||||| ||| || |||||||||||||||||||||||
Sbjct 1493 TGAAAACAA-CATGTAT-CTTCATGAAA-CTTATTTCAGGATCTTCTTCGTTGAGTTATC 1549
Query 1549 AGCATCTTTATGTGGTAAAAACTCGAATCAGTGTTTCCTTTTAAAAATTGTACTATGGAT 1608
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
Sbjct 1550 AGCATCTTTATGTGGTAAAAACTCGAATCAGTGTTTCCTTTTAAAACT-GTACTATGGTT 1608
Query 1609 CTGTACACTAACGAAGTGTTTTGCCACTTATTGGTTATTTCAAGT 1653
|||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1609 GTGTACACTAACGAAGTTTTTTGCCACTT-TTGGTTATTTCAAGT 1652
> Ahg496691 jgi|Araly1|496691|fgenesh2_kg.8__2507__AT5G64760.1
Length=1378
Score = 1448 bits (784), Expect = 0.0
Identities = 1140/1313 (87%), Gaps = 20/1313 (2%)
Strand=Plus/Plus
Query 190 CGATAGATCGGCTTCTGAATGAAGAGAAGCAGATGAGACTCGCCGAAAACGTAGCCGGTA 249
|||| ||| |||||||||| ||||||||||||||||| ||||| ||||| || ||||| |
Sbjct 56 CGATTGATAGGCTTCTGAACGAAGAGAAGCAGATGAGGCTCGCGGAAAATGTCGCCGGAA 115
Query 250 CAAGGAAAGCCGCCACTGAGATTCTTCAGCTTTGTTTCGATGCTAAGGATTGGAAACTTC 309
| || ||||| || || |||||||| ||||||||||||| |||||||||||||||||||
Sbjct 116 CTAGAAAAGCAGCTACCGAGATTCTGAAGCTTTGTTTCGAAGCTAAGGATTGGAAACTTC 175
Query 310 TGAATGAGCAGATTCTCAATCTCTCTAAGAAACGTGGTCAGCTCAAACAGGCTGTGCAAT 369
| || || |||||| | |||||||| ||||||||||||||||| || |||||||| ||||
Sbjct 176 TCAACGAACAGATTTTGAATCTCTCCAAGAAACGTGGTCAGCTTAAGCAGGCTGTACAAT 235
Query 370 CCATGGTGCAGCAAGCAATGCAGTATATCGATCAGACACCAGACATTGAAACTCGGATAG 429
|||||||||| ||||||||||||||||| ||||||||||| || || ||||||||| | |
Sbjct 236 CCATGGTGCAACAAGCAATGCAGTATATTGATCAGACACCGGATATCGAAACTCGGGTTG 295
Query 430 AGCTTATCAAGACGCTGA-ACAATGTATCTGCTGGAAAGATATATGTTGAAATCGAGAGG 488
||||||| ||||| || | ||| ||||||||||||||||||||||| |||||||||||
Sbjct 296 AGCTTATTAAGAC-CTTACTCAACGTATCTGCTGGAAAGATATATGTCGAAATCGAGAGA 354
Query 489 GCACGTCTCACCAAGAAACTTGCTAAGATTAAGGAAGAACAGGGTCAGATAGCTGAAGCT 548
|| ||| | |||||||| ||||||||||||||||||||||| ||| ||| |||||||||
Sbjct 355 GCTCGTTTGACCAAGAAGCTTGCTAAGATTAAGGAAGAACAAGGTTTGATTGCTGAAGCT 414
Query 549 GCAGATCTTATGCAAGAAGTTGCTGTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAA 608
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 415 GCAGATCTTATGCAAGAAGTTGCTGTGGAGACATTTGGTGCCATGGCAAAAACTGAGAAA 474
Query 609 ATTGCATTT-ATCCTTGAACAAGTTCGCTTGTGCTTGGATCGTCAAGATTTTGTTCGTGC 667
||||| ||| |||||||||||||| |||||||| |||||||| | ||||||||| |||||
Sbjct 475 ATTGC-TTTCATCCTTGAACAAGTCCGCTTGTGTTTGGATCGACGAGATTTTGTCCGTGC 533
Query 668 ACAAATCTTATCTAGGAAGATCAATCCTAGAGTTTTTGACGCAGATACaaaaaaaGATAA 727
|||||| ||||||||||||||||| || ||||| ||||| ||||| || || ||||| ||
Sbjct 534 ACAAATTTTATCTAGGAAGATCAACCCAAGAGTGTTTGATGCAGACACCAAGAAAGAGAA 593
Query 728 GAAGAAACCTAAGGAAGGTGATAACATGGTAGAAGAGGCTCCTGCTGATATACCAACCCT 787
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 594 AAAGAAACCTAAGGAAGGTGATAACATGGTAGAGGAGGCTCCAGCTGATATACCAACA-T 652
Query 788 T-TTGGAGCTTAAGCGAATTTACTACGAGCTTATGATTCGGTACTATTCTCATAACAATG 846
| |||||||| |||||||||||||| ||||| ||||||||||| |||||||| |||||||
Sbjct 653 TGTTGGAGCTAAAGCGAATTTACTATGAGCTCATGATTCGGTATTATTCTCACAACAATG 712
Query 847 AGTACATTGAAATCTGCCGTAGCTACAAGGCGATATATGATATCCCTTCAGTAAAAGAAA 906
|||||||||| || ||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 713 AGTACATTGAGATATGCCGTAGCTACAAGGCGATATATGATATTCCTTCGGTAAAGGAAA 772
Query 907 -CTCCGGAGCAGTGGATTCCGGTCCTGAGGAAGATCTGCTGGTTCTTGGTCTTGGCACCT 965
| || || || |||||||| ||||||||||||||||||||||| |||| |||||||||
Sbjct 773 AC-CCAGAACAATGGATTCCAGTCCTGAGGAAGATCTGCTGGTTTTTGGCCTTGGCACCA 831
Query 966 CATGACCCAATGCAATCAAGCTTGCTCAATGCAACTCTG-GAAGACAAGAATTTATCAGA 1024
||||| || |||||||| ||| |||| |||||||| || ||||| || || ||||||||
Sbjct 832 CATGATCCGATGCAATCGAGCCTGCTTAATGCAAC-CTTAGAAGATAAAAAATTATCAGA 890
Query 1025 AATCCCTGATTTCAAGATGCTTCTAAAACAGGTAGTGACAATGGAGGTTATTCAATGGAC 1084
|| ||||||||||||||||||||||||||| | || ||||||||||| ||||| |||||
Sbjct 891 GATTCCTGATTTCAAGATGCTTCTAAAACAGATTGTTACAATGGAGGTGATTCAGTGGAC 950
Query 1085 ATCTCTGTGGAACAAATACAAGGATGAGTTCGAGAAAGAGAAAAGCATGATTGGAGGTTC 1144
|||||| ||||| ||||||||||| || || |||| ||||||| |||||||||||| ||
Sbjct 951 ATCTCTCTGGAATAAATACAAGGACGAATTTGAGAGTGAGAAAAACATGATTGGAGGCTC 1010
Query 1145 TTTGGGTGACAAAGCTGGTGAAGATCTGAAACTGAGAATCATCGAACATGTAAAATATCC 1204
||||||||||||||||||||||||||| ||||| ||||| |||||||| || || ||
Sbjct 1011 TTTGGGTGACAAAGCTGGTGAAGATCTCAAACTAAGAATAATCGAACAC--AATAT-TC- 1066
Query 1205 TCGTTGTCTCAAAGTACTACGCAAGGATAACCTTAAAGAGACTTGCCGAGCTTTTATGCC 1264
|||| ||||||||||| || ||||||| ||||||||||||||||| || ||||||||||
Sbjct 1067 TCGTCGTCTCAAAGTATTATTCAAGGATTACCTTAAAGAGACTTGCAGAACTTTTATGCC 1126
Query 1265 TGAGCA-TGGAGGAGGCGGAGAAGCATCTATCGGAGATGGTAGTGTCAAAAGCACT-GAT 1322
| | || || |||| || |||||||||||||| || ||||| ||||| ||||| || |||
Sbjct 1127 TAACCACTG-AGGAAGCAGAGAAGCATCTATCTGAAATGGTTGTGTCCAAAGC-CTTGAT 1184
Query 1323 TGCAAAAATAGACAGACCATCTGGAATTGTGTGCTTCCAGATCGC-AAAGGACAGCAACG 1381
|||||||| ||||||||||| ||||| | ||||||||||| | |||| |||||||||
Sbjct 1185 AGCAAAAATCGACAGACCATCCGGAATAATCTGCTTCCAGATTGTTAAAG-ACAGCAACG 1243
Query 1382 AGATTCTAAACTCGTGGGCAGGGAATTTGGAGAAGCTTCTAGATCTTGTGGAAAAGAGTT 1441
| ||||| |||||||||||| || |||||||||||| | |||||||| ||||||||||
Sbjct 1244 AAATTCTCAACTCGTGGGCAACAAACTTGGAGAAGCTTTTGGATCTTGTTGAAAAGAGTT 1303
Query 1442 GCCACCAAATTCACAAGGAAACCATGGTTCACAAAGCCGCTCTCAGACCTTGA 1494
| ||||| |||||||| ||||| |||||||| ||||| || || ||| |||||
Sbjct 1304 GTCACCAGATTCACAAAGAAACAATGGTTCATAAAGCTGCACTAAGAGCTTGA 1356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62925084740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5