BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09910.1
Length=1130
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325538 jgi|Araly1|325538|fgenesh1_pm.C_scaffold_6000758 1546 0.0
Ahg496698 jgi|Araly1|496698|fgenesh2_kg.8__2514__AT5G64813.1 754 0.0
Ahg937018 jgi|Araly1|937018|scaffold_501209.1 206 4e-52
Ahg925319 jgi|Araly1|925319|scaffold_200880.1 121 1e-26
> Ahg325538 jgi|Araly1|325538|fgenesh1_pm.C_scaffold_6000758
Length=1002
Score = 1546 bits (837), Expect = 0.0
Identities = 948/1003 (95%), Gaps = 2/1003 (0%)
Strand=Plus/Plus
Query 1 ATGCGGTTTTGGAGGGAACGTGGCAGGGAAAATAAGGAACATATGGTAGCGCCATTATGC 60
||| |||||||||||||||||| |||||||||||||||||| | || ||||||||||||
Sbjct 1 ATGAGGTTTTGGAGGGAACGTGAAAGGGAAAATAAGGAACATGTCGTCGCGCCATTATGC 60
Query 61 GGCCAAATTCGAGTATTGGTGGTTGGTGATTCAGGTGTGGGAAAATCATCTCTTGTGCAT 120
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||
Sbjct 61 GGCCAAATTCGAGTATTGGTGGTTGGTGATTCAGGTGTGGGAAAGTCATCTCTTCTTCAT 120
Query 121 CTCATTGTCAAAGGCTCCTCTATTGTTCGCCCATCTCAAACTATTGGATGTACAGTTGGT 180
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 121 CTCATTGTCAAAGGCTCCTCTATCGTTCGCCCTTCTCAAACTATTGGATGTACAGTTGGT 180
Query 181 GTCAAGCACTTAACTTACGCAAGTCCTGCTAGTTCTTCAAGTATCATTAAAGGTGACTCA 240
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 GTCAAGCACTTAGCTTACGCAAGTCCTGCTAGTTCTTCAAGTAGCATTAAAGGTGACTCA 240
Query 241 GAGAGAGATTTCTTCGTCGAACTTTGGGATGTTTCAGGTCATGAACGATACAAAGATTGC 300
|||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 241 GAGAGAGATTTCTTTGTCGAACTTTGGGATGTATCTGGTCATGAACGATACAAAGATTGC 300
Query 301 CGCTCACTGTTCTATTCACAAATCAATGGAGTTATTTTTGTTCATGATCTTTCGCAAAGG 360
||||||||||||||||||||| | ||||||||||| ||||||||||||||||| ||| |
Sbjct 301 CGCTCACTGTTCTATTCACAAGTTAATGGAGTTATCTTTGTTCATGATCTTTCTCAACGA 360
Query 361 ACTACAAAAACTAATTTGCAGAAATGGGCGGGTGAAGTTTCAGTAACTGGGGAGTTTTCA 420
| |||||||| ||||||||||||||||| |||||||||||||||| ||||| |||||||
Sbjct 361 AGAACAAAAACAAATTTGCAGAAATGGGCAGGTGAAGTTTCAGTAAATGGGGCGTTTTCA 420
Query 421 GCTCCCCTTTCTTCTGGTGGGCCTGGTGGTCTTCCCGTCCCATACATCGTTATTGGAAAC 480
||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 421 GCTCCACTTTCTTCTGGTGGGCCTGGTGGTCTTCCCGTCCCTTACATTGTTATTGGAAAC 480
Query 481 AAAGCTGATATTGCTGCCAAAGGA-GGAACAAATGGAAGCAGTGGCAATCTTGTTGATGC 539
||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||
Sbjct 481 AAAGCTGATATTGCTGC-AAAGGAAGGAACAAGTGGAAGCAGTGGCAATCTTGTTGATGC 539
Query 540 AGCTCGTCATTGGGTTGAGAAGCAGGGTCTGCTTCCCCATAGTGATGAACTTCCTCTCTC 599
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 AGCTCGTCAGTGGGTTGAGAAGCAAGGTCTGCTTCCCCATAGTGATGAACTTCCTCTCTC 599
Query 600 TGAGAGCTTCCCTAGCAATGTTGGTCTCATAATGGCTGCCAAGGAAGCTAGATATGACAA 659
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGAGAGCTTCCCTAGCAATGGTGGTCTCATAATGGCTGCCAAGGAAGCTAGATATGACAA 659
Query 660 AGAAGCTCTGACCAAAATTTTCCATATGTTGATAAGAAGAAGATATTTCTCAGACGAACT 719
||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 660 AGAAGCTCTGAACAAATTTTTCCATATGTTGATAAGAAGAAGATATTTCTCAGATGAACT 719
Query 720 ACCGTCGCCTTCTTCAGCATGGTCTCTTTCCCATGCACCTTCCCAGCGGTTAGATGAGGG 779
|||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||
Sbjct 720 ACCGTCGCCTTCTTCAGCATGGTCTCTTTCCCCTGGACCTTCCCAGCGGTTAGACGAGGG 779
Query 780 CACAAGTGATGAAGATCAGTTCTATAAAAGAACAAGCCTAAGGGAAGGAGATGCTTACAA 839
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 780 CACAAGTGATGAAGATCAGTTCTATAAAAGAACAAGCCTAAGGGAAGGAGATCCTTACAA 839
Query 840 ATATAACACATTACCGCAACACAATCTCATGCAGTCTCCTACACTCTATCCGCAGCAACC 899
|||||||||||||| |||||||| |||| |||| |||||||||||||||||||||||||
Sbjct 840 GTATAACACATTACCACAACACAACCTCACGCAGCCTCCTACACTCTATCCGCAGCAACC 899
Query 900 ACCTGACCGTTACAATTACGCTATTCCGAGATTCTCTCTTTCCAGTGTAGAGGAAACCAG 959
|||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 900 ACCTGACCGTTACAGTTACGCCATTCCGAGATTCTCTCTTTCCAGTGTAGAGGAGACCAA 959
Query 960 CAATGGTAATGGCAGGTCTAAGCGGATGGATATTAACGTCTGA 1002
||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 960 CAATGGTAATGGCAGGTCTAAGCCGATGGATATTAACGTTTGA 1002
> Ahg496698 jgi|Araly1|496698|fgenesh2_kg.8__2514__AT5G64813.1
Length=1761
Score = 754 bits (408), Expect = 0.0
Identities = 838/1039 (81%), Gaps = 55/1039 (5%)
Strand=Plus/Plus
Query 6 GTTTTGGAGGGAACGTGGCAGGGAAAATAAGGAACATATGGTAGCGCCATTATGCGGCCA 65
||||||||||||||||| ||||| |||||||| || || |||| |||||||| || ||
Sbjct 466 GTTTTGGAGGGAACGTGAAAGGGACAATAAGGAGCACATCTTAGCTCCATTATGTGGGCA 525
Query 66 AATTCGAGTATTGGTGGTTGGTGATTCAGGTGTGGGAAAATCATCTCTTGTGCATCTCAT 125
| ||||||||||||| |||||||| |||||||| |||||| |||| ||||| || |||||
Sbjct 526 AGTTCGAGTATTGGTTGTTGGTGACTCAGGTGTTGGAAAAACATCACTTGTACACCTCAT 585
Query 126 TGTCAAAGGCTCCTCTATTGTTCGCCCATCTCAAACTATTGGATGTACAGTTGGTGTCAA 185
|||||| || ||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 586 CAACAAAGGTTCTTCTATTGTTCGCCCACCTCAAACTATTGGATGCACAGTTGGTGTCAA 645
Query 186 GCACTTAACTTACGCAAGTCCTGCTAGTTCTTCAAGTATCATTAAAGGTGACTCAGAGAG 245
|||| |||| |||| ||||| |||||||||||||||| |||| ||||||||||||||||
Sbjct 646 GCACATAACCTACGGGAGTCCAGCTAGTTCTTCAAGTAGCATTCAAGGTGACTCAGAGAG 705
Query 246 AGATTTCTTCGTCGAACTTTGGGATGTTTCAGGTCATGA-ACGATACAAAGATTGCCGCT 304
||||||||| || ||||| |||||||| || || ||||| | ||||||||||||| || |
Sbjct 706 AGATTTCTTTGTTGAACTCTGGGATGTGTCTGGGCATGAGA-GATACAAAGATTGTCGGT 764
Query 305 CACTGTTCTATTCACAAATCAATGGAGTTATTTTTGTTCATGATCTTTCGCAAAGGACTA 364
||||||||||||||||||||||||| |||||||||||||| ||||| || ||||| | |
Sbjct 765 CACTGTTCTATTCACAAATCAATGGCGTTATTTTTGTTCACGATCTATCTCAAAGAAGAA 824
Query 365 CAAAAACTAA-TTTGCAGAAATGGGCGGGTGAAGTTTCAGTAACTGGGGA-GTTTTCAGC 422
||||||| || ||||||| ||||||| ||| ||| ||| ||| |||| ||||||||
Sbjct 825 CAAAAAC-AAGCTTGCAGAGATGGGCGTCTGAGGTTGCAGCGACT-GGGACTTTTTCAGC 882
Query 423 TCCCCTTTCTTCTGGTGGGCCTGGTGGTCTTCCCGTCCCATACATCGTTA-TTGGAAACA 481
||| ||| | || ||||| |||||||||||||| || |||||||| | || |||| ||||
Sbjct 883 TCCTCTTCCCTCGGGTGGTCCTGGTGGTCTTCCTGTTCCATACATTG-TAGTTGGCAACA 941
Query 482 AAGCTGATATTGCTGCCAAAGGAGGAACAAATGGAAGCAGTGGCAATCTTGTTGATGCAG 541
|||| ||||||||||| |||| ||||||||| ||||||||||| ||||||||||||||||
Sbjct 942 AAGCAGATATTGCTGCAAAAGAAGGAACAAAAGGAAGCAGTGGAAATCTTGTTGATGCAG 1001
Query 542 CTCGTCATTGGGTTGAGAAGCAGGGTCTGCTTCCC-CAT-A-GTGATGAACTTCCTCTCT 598
|||||||||||||||||||||| ||| ||||||| | | | |||| || ||||||||||
Sbjct 1002 CTCGTCATTGGGTTGAGAAGCAAGGTTTGCTTCCTTCTTCAAGTGAGGATCTTCCTCTCT 1061
Query 599 CTGAGAGCTTCCCTAGCAATGTTGGTCTCATAATGGCTGCCAAGGAAGCTAGATATGACA 658
||| ||||| ||| | |||| ||||||||| ||||||||| ||| | ||||| || |
Sbjct 1062 TTGAAAGCTTTCCTGGTAATGGCGGTCTCATAGCGGCTGCCAAAGAAACCAGATACGATA 1121
Query 659 AAGAAGCTCTGACCAAAATTTTCCATATGTTGATAAGAAGAAGATATTTCTCAGACGAAC 718
| |||||| ||| |||| |||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1122 AGGAAGCTTTGAACAAATTTTTCCGGATGTTGATAAGAAGAAGATATTTCTCAGATGAAC 1181
Query 719 TACC-GTC-GCCTTCTTCAGCATGGTCTCTTTC--CCATGC-A-CCT--TC--CC-AGCG 767
| || | | |||| | | |||||||| |||| |||| | | ||| || || | ||
Sbjct 1182 TGCCAG-CAGCCT-CA-C--CATGGTCTGTTTCGTCCATTCCAACCTCATCATCCCAACG 1236
Query 768 GTTAGATGAGGGCACAAGTGATGAAGATCAGTTCTATAAAAGAACAAGCCTA-AGGGAAG 826
|||||| ||| |||||||||||| ||||| || || || ||||||| || | ||| |
Sbjct 1237 GTTAGACGAGATCACAAGTGATGATGATCAATTTTACAAGCGAACAAGTTTACATGGA-G 1295
Query 827 GAG-ATGCT--TACAA-AT-ATA--ACA-C-A-TTACC-GCA-A-CACAATCTCA-TGCA 872
| || | ||||| | | | || | | || || ||| | | ||| || | | |
Sbjct 1296 AACCATACAAGTACAACAACACATTACTGCCACTT-CCAGCACAACGCAACCTAACTCC- 1353
Query 873 GTCTCCTACACTCTATCCGCAGCAACCAC---CTGACCGTT-ACAATTACGCTATTCCGA 928
| |||| || ||||||||||| ||||| || ||| | | || ||||| || ||||
Sbjct 1354 GCCTCCCACGCTCTATCCGCAACAACCTGTGTCT-ACCCCTGATAACTACGCCATCCCGA 1412
Query 929 GATTCTCTCTTTCCAGTGTAGAGGAA--A-CCAGCAATGGTAATGGCAG-GTCTAAGCGG 984
||| |||||||||||||||| | ||| | ||| |||||| | || ||| | |||||||
Sbjct 1413 GATACTCTCTTTCCAGTGTACAAGAATCAACCAACAATGGCAGTGCCAGAG-CTAAGCGA 1471
Query 985 ATGGATATTAACGTCTGAA 1003
|||||||| ||||||||||
Sbjct 1472 ATGGATATAAACGTCTGAA 1490
> Ahg937018 jgi|Araly1|937018|scaffold_501209.1
Length=414
Score = 206 bits (111), Expect = 4e-52
Identities = 184/216 (85%), Gaps = 18/216 (8%)
Strand=Plus/Plus
Query 421 GCTCC-CCTTTCTTCTGGTGGGCCTGGTGGTCTTCCCGTCCCATACATCGTTATTGGAAA 479
||||| |||||||||||||||||||||| ||||||| || |||||||||||||||||||
Sbjct 121 GCTCCTCCTTTCTTCTGGTGGGCCTGGTTTTCTTCCCATCACATACATCGTTATTGGAAA 180
Query 480 CAAAGCTGATATTGCTGCCAAAGGA-GGAACAAATGGAAGCAGTGGCAATCTTGTTGATG 538
||||||||||||||||| || ||| ||||||| |||||| |||||||||||||||||||
Sbjct 181 CAAAGCTGATATTGCTGAGAA-GGACGGAACAAGTGGAAGTAGTGGCAATCTTGTTGATG 239
Query 539 CAGCTCGTCATTGGGTTGAGAAGCAGGGTCTGCTTCCCCATAGTGATGAACTTCCTCTCT 598
| || | | | ||||| |||||||||||||||||||||| |||||||||||
Sbjct 240 --G---GT--T-G-----ACAAGCATGGTCTGCTTCCCCATAGTGATGGACTTCCTCTCT 286
Query 599 CTGAGAGCTTCCCTAGCAATGTTGGTCTCATAATGG 634
|||| ||||||| |||||| ||||||||||||||
Sbjct 287 --GAGAACTTCCCTTGCAATGGTGGTCTCATAATGG 320
> Ahg925319 jgi|Araly1|925319|scaffold_200880.1
Length=398
Score = 121 bits (65), Expect = 1e-26
Identities = 138/171 (81%), Gaps = 14/171 (8%)
Strand=Plus/Plus
Query 376 TTGCAGAAATGGGCGGGTGAAGTTTCAGTAACTGGGGA-GTTTTCAGCTCCCCTTTCTTC 434
||| |||||| |||||||||||||||||||||| ||| | ||||||||| ||||||||
Sbjct 194 TTGAAGAAAT-GGCGGGTGAAGTTTCAGTAACT-AGGACATGTTCAGCTCCTCTTTCTTC 251
Query 435 TGGTGGGCCTGGTGGTCTTCCCGTCCCATACATCGTTATT--G-GAAACA--A-AGCTGA 488
|||||||| |||| ||||||| ||||||||||| || || | | || | | |
Sbjct 252 TGGTGGGCTTGGTTGTCTTCCAGTCCCATACAT--TT-TTCAGCTCATCATTATTGGAAA 308
Query 489 TATTGCTGCCAAAGG-AGGAACAAATGGAAGCAGTGGCAATCTTGTTGATG 538
| |||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct 309 CAAAGCTGAC-AAGGAAGGAACAAATGGAAGCAGTGGCAATCTTGTTGATG 358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42125823285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5