BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09920.1
Length=715
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487817 jgi|Araly1|487817|fgenesh2_kg.6__951__AT5G09920.1 911 0.0
> Ahg487817 jgi|Araly1|487817|fgenesh2_kg.6__951__AT5G09920.1
Length=626
Score = 911 bits (493), Expect = 0.0
Identities = 537/559 (96%), Gaps = 0/559 (0%)
Strand=Plus/Plus
Query 61 TTTAGGGTTCGATTTCGCTCCTTGGTAATCACCATGTCCGGAGAAGAAGAAGAGAACGCC 120
|||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 TTTAGGTTTCGATTTCCCTCCTTGGTAATTGCCATGTCCGGAGAAGAAGAAGAGAACGCC 60
Query 121 GCCGAACTCAAGATCGGAGATGAGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTC 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 GCCGAACTCAAGATCGGAGATGAGTTTTTGAAGGCAAAGTGCTTAATGAATTGTGAAGTC 120
Query 181 TCTTTGATTCTTGAGCACAAGTTTGAACAGCTTCAGCAAATCTCAGAGGATCCTATGAAT 240
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 121 TCTTTGATTCTTGAGCACAAGTTTGAACAGCTTCAACAAGTCTCAGAGGATCCTATGAAT 180
Query 241 CAAGTTTCTCAAGTGTTTGAGAAGTCCTTGCAATATGTGAAGCGATTCAGCCGCTACAAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 CAAGTTTCTCAAGTGTTTGAGAAGTCCTTGCAATATGTGAAGCGATTCAGCCGGTACAAG 240
Query 301 AATCCAGATGCTGTTAGACAAGTTCGAGAAATACTAAGCAGACATCAACTCACTGAGTTT 360
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 AATCCAGACGCTGTTAGACAAGTTCGAGAAATACTGAGCAGACATCAACTCACTGAGTTT 300
Query 361 GAGCTATGTGTTCTTGGCAATCTCTGTCCTGAAACTGTTGAAGAAGCAGTGGCAATGGTT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAGCTATGTGTTCTTGGCAATCTCTGTCCTGAAACTGTTGAAGAAGCAGTGGCAATGGTT 360
Query 421 CCTTCTCTTAAGACAAAAGGAAGAGCTCATGATGATGAAGCTATTGAGAAGATGCTCAAT 480
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 361 CCTTCTCTTAAGACAAAAGGAAGAGCTCATGATGATGAAGCAATTGAGAAGATGCTTAAT 420
Query 481 GATCTCTCACTTGTCAAGAGATTCGAGTAGTGCAGAAGATTCTCAAGATCTAAGATTCTG 540
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||| | |
Sbjct 421 GATCTCTCTCTTGTCAAGAGATTCGAGTAGTGCAGAAGATTCTCAAGATCTTAGACTAAG 480
Query 541 AACATTTAGCAGGATGCTTTACTTGCCTTCTAGCTGATCTGGAGTTAATTCGCCACGTCT 600
||||||| ||||||||||||||||||||||| |||||||||||||||||| ||| ||||
Sbjct 481 AACATTTGGCAGGATGCTTTACTTGCCTTCTCGCTGATCTGGAGTTAATTTTCCATGTCT 540
Query 601 GAAATTATAAAGCTTTAAT 619
|||||||||||||||||||
Sbjct 541 GAAATTATAAAGCTTTAAT 559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26304812730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5