BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09940.1
Length=642
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940457 jgi|Araly1|940457|scaffold_601001.1 850 0.0
> Ahg940457 jgi|Araly1|940457|scaffold_601001.1
Length=684
Score = 850 bits (460), Expect = 0.0
Identities = 587/647 (91%), Gaps = 13/647 (2%)
Strand=Plus/Plus
Query 1 ATGTATCAAGAAACTAAGCAATTTTATCATTTATGGCTACTTGCTGTCCAAGAAAGAGAC 60
||||| ||||||||| | || | ||||||| ||||| ||||||||| ||||||||||||
Sbjct 26 ATGTACCAAGAAACTTATCAGTATTATCATCTATGGAGACTTGCTGTTCAAGAAAGAGAC 85
Query 61 GAAGCAAGAGAACATTTGAAACAATCACTCGTC-GAACTGTCTAGATTACAGGAATGTTT 119
||||||||||||||| ||||||||||||||| | ||||| || ||| |||||||| ||
Sbjct 86 GAAGCAAGAGAACATCTGAAACAATCACTCG-CGGAACTCTCGAGAATACAGGAACACTT 144
Query 120 CAACACTATTCTTTTGTCCGAAGACCAAC--A-AATACCCCATTATTCTTACTCAGAAAC 176
|||||| ||||||||||| ||||| |||| | |||||| ||||| ||||||||||||
Sbjct 145 CAACACCATTCTTTTGTCAGAAGAACAACAAATAATACCGCATTA---TTACTCAGAAAC 201
Query 177 CACAGACGAAACCCCCGATCATCAAAAACTGTATAGTTACAATAACTTCTCCAACGAGTC 236
||| ||||||||| ||||||||| ||||| |||||||||||||||||||| | ||| ||
Sbjct 202 CACTGACGAAACCGCCGATCATC-AAAAC--TATAGTTACAATAACTTCTCTAGCGATTC 258
Query 237 TCCTTCGCGATTCTCGTCCGCATCGTCGATCGATCTCGTCTCTAACTCAACTGTCTATTC 296
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 259 TCCTTCGCGATTCTCGTCCGCATCGTCGATGGATCTCGTCTCTAACTCAACTGTGTATTC 318
Query 297 CTCGCCGGAGACCTACGACTCTGATTGTTACAGCCTCCGGACG-TTGCAGATGGGTTTTG 355
||||||||||||||| || ||||||||||||||| ||||| || | |||||||||||||
Sbjct 319 CTCGCCGGAGACCTATGATTCTGATTGTTACAGCATCCGGTCGAAT-CAGATGGGTTTTG 377
Query 356 CATTTGAGGAGAAGAAAGATTTTGAGACCCTTGTGCTGGAGAATATAGGACTCGGAAGAA 415
||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 CATTTCAGGAAAAGGAAGATTTTGAGACCCTTGTGCTGGAGAATATAGGACTCGGAAGAG 437
Query 416 TGTTGCCGGAGAACGGTAAGTTCCAGCAAGCTATCATTGAAGCTGGATCGTTGGTTGACT 475
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 438 TGTTGCCGGAGAATGGTAAGTTCCAGCAAGCTGTCATTGAAGCTGGATCGTTGGTTGAGT 497
Query 476 CATTGTTCATAACCGGTCCGATTCCAAAATGGAGAAATCCTCCGGTTCAAATGTTGAGTC 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 CATTGTTCATAACCGGTCCGATTCCAAAATGGAGAAATCCTCCGGTTCAAATGTTGAGTC 557
Query 536 AAAGACCGCTTCTGAGTCATTCTATCGGAAAATGGAATTATGGTGGTCAGGGGATCATAA 595
|||||||| |||| ||| ||||||| |||||||||||||||||||||||||||||| |||
Sbjct 558 AAAGACCGGTTCTAAGTAATTCTATTGGAAAATGGAATTATGGTGGTCAGGGGATCCTAA 617
Query 596 ACCGGTCTTTCTCTGGCAAAATGCCACGGTTAAGCTTGATGCCTTAA 642
||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 618 ACCGGTCTTTCTCCGGCAAAATGCCACGGTTCAGCTTGATGCCATAA 664
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23521839789
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5