BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09960.1
Length=693
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940460 jgi|Araly1|940460|scaffold_601004.1 595 1e-169
Ahg496705 jgi|Araly1|496705|fgenesh2_kg.8__2521__AT5G64850.1 174 7e-43
> Ahg940460 jgi|Araly1|940460|scaffold_601004.1
Length=386
Score = 595 bits (322), Expect = 1e-169
Identities = 365/385 (95%), Gaps = 6/385 (2%)
Strand=Plus/Plus
Query 164 TATCTGTTGAATCAAATCATATGGAAGACGATCGAAAAGAGAAGAACACTCCGTGGCTAT 223
|||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 TATCTGTTGACTCAAACCATATGGAAGACGATCGAAAAGAGAAGAACACTCCATGGCTAT 60
Query 224 CAGTGCCACAGTTTGGTGATTGGGACC-AAAA--AGGAGGAGGAACAATGCCTGATTACT 280
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 61 CAGTGCCACAGTTTGGTGATTGGGACCAAAAAGGAGGAGGAGGAACAATGCCTGATTACT 120
Query 281 CTATGGATTTCACTAAGATTAGAGAGATGAGGAAACAAAACAAGAGAGACCCTTCTCGAG 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTATGGATTTCACTAAGATTAGAGAGATGAGGAAACAAAACAAGAGAGACCCTTCTCGAG 180
Query 341 CCAGTTTAGGCAATGAGGAAGAGCTCATTAAGCCACCCGAGTCAGCAACATCAACTGCTG 400
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTAGTTTAGGCAATGAGGAAGAGCTCATTAAGCCACCCGAGTCAGCAACATCAACTGCTA 240
Query 401 AGCTTACCACGGTCCAAAGTGAAAACCAACGAGAGTTCTCTCCCAGCCACCATCATCA-- 458
| || || |||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 241 ATCTCACGACGGTCCAGAGCGAAAACCAACGAGAGTTCTCTCCCAGCCACCATCACCACC 300
Query 459 A-CCACATTCTCCTTCTACGAGGAGAAGTATGTTCAGCTGCTTCAACTGCTGCGTTAAAG 517
| || ||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 301 AACCCCATTCTCCTTCTACGAGGAGAAGCATCTTCAGCTGCTTCAACTGCTGCGTTAAAG 360
Query 518 CTTGAAGATTTCTTCTTGAGCAAAG 542
|||||||||||||||||||||||||
Sbjct 361 CTTGAAGATTTCTTCTTGAGCAAAG 385
> Ahg496705 jgi|Araly1|496705|fgenesh2_kg.8__2521__AT5G64850.1
Length=749
Score = 174 bits (94), Expect = 7e-43
Identities = 167/200 (84%), Gaps = 14/200 (7%)
Strand=Plus/Plus
Query 176 CAAATCATATGGAAGACGATCGAAAAGAG---AAGAACACTCCGTGGCTATCAGTGCCAC 232
||| ||| |||| | | |||||||||||| |||||| | || ||||||||||| ||||
Sbjct 152 CAATTCACATGG-A-A-GATCGAAAAGAGAACAAGAACTCGCCATGGCTATCAGTACCAC 208
Query 233 AGTTTGGTGATTGGGACCAAAAAGGAGGAGGAACAATGCCTGATTACTCTATGGATTTCA 292
||||||| |||||||| | |||| ||||||| |||| ||||||||| |||||||||
Sbjct 209 AGTTTGGAGATTGGGATC-AAAA--AGGAGGATCAAT---TGATTACTCAATGGATTTCT 262
Query 293 CTAAGATTAGAGAGATGAGGAAACAAAACAAGAGAGACCCTTCTCGAGCCAGT-TTAGGC 351
| ||||| |||||||||||||||| ||||||||||| |||||||||||||| || ||
Sbjct 263 CAAAGATCAGAGAGATGAGGAAACTTAACAAGAGAGATGCTTCTCGAGCCAGTCTT-GGT 321
Query 352 AATGAGGAAGAGCTCATTAA 371
||||||||||| ||||||||
Sbjct 322 AATGAGGAAGAACTCATTAA 341
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25466108556
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5