BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09970.1
Length=2159
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940462 jgi|Araly1|940462|scaffold_601006.1 2595 0.0
> Ahg940462 jgi|Araly1|940462|scaffold_601006.1
Length=1643
Score = 2595 bits (1405), Expect = 0.0
Identities = 1573/1654 (95%), Gaps = 12/1654 (1%)
Strand=Plus/Plus
Query 277 aaGTACATCAACCCAAAATAATGGAGTTGATGAATTTGGCTTCAAAAGAAACAAGCTATT 336
||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 AAGTACATCCACCCAAAAAAATGGAGTTGATGAATTTGGCATCAAAAGAAACAAGCTATT 60
Query 337 GGATGATTGCACTGCCTGCCGGTTTTGGATCCCAAAACCTACATGATGTTTCCACCCTAG 396
||||||| ||||||||||||| |||||||||||||||||||||||||||||||| | | |
Sbjct 61 GGATGATCGCACTGCCTGCCGTTTTTGGATCCCAAAACCTACATGATGTTTCCATCATCG 120
Query 397 GCTATCTATTCCTTGCCGTCGTTTTTCTCTCTATAGTCACGTGGGCTCTCGCCGGAGGCG 456
||||||| ||||| |||||||||| |||||||||| ||||||||||||| ||||||||||
Sbjct 121 GCTATCTCTTCCTCGCCGTCGTTTCTCTCTCTATACTCACGTGGGCTCTTGCCGGAGGCG 180
Query 457 GTGGTGTCGCTTGGAAGAACGGCCGTAACCGGTTGGGTCGTGTCGCGATCCCTGGTCCTC 516
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 181 GTGGTGTCGCTTGGAAGAACGGCCGTAACCGGTTGGGTCGTGTTGCGATCCCGGGTCCTC 240
Query 517 GTGGCATACCAGTATTCGGCAGTCTTTTCACTCTCAGCCGAGGCTTGGCTCATCGGACGT 576
| || ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 241 GGGGAATACCAGTATTCGGCAGTCTTTTCACTCTCAGCCGTGGCTTGGCCCATCGGACTT 300
Query 577 TAGCAGCCATGGCTTGGAGCCGAGCCAACACTGAGATTATGGCTTTTAGCCTTGGTTCAA 636
|||| ||||||||||||||||||||||||| ||||||||||||||| ||||| ||||| |
Sbjct 301 TAGCCGCCATGGCTTGGAGCCGAGCCAACATTGAGATTATGGCTTTCAGCCTCGGTTCTA 360
Query 637 CGCCGGTTATCGTGGCTTCTGAACCAAACATAGCTCGTGAGATTCTGATGTCGCCTCACT 696
|||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||
Sbjct 361 CGCCGGTTATCGTGGCTTCTGAGCCAAACACAGCTCGCGAGATTCTGATGTCGCCTCACT 420
Query 697 TCGCGGACCGGCCGGTTAAGCAGTCTGCTAAGAGCCTCATGTTCAGCCGAGCCATAGGTT 756
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 421 TCGCGGACCGGCCGGTTAAGCAGTCTGCTAAGAGCCTCATGTTCAGCCGAGCCATAGGAT 480
Query 757 TCGCCCCAAACGGGACTTACTGGCGCATGTTAAGAAGGATCGCATCGACTCACCTATTTG 816
|||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||| |
Sbjct 481 TCGCCCCAAACGGGGCTTACTGGCGCACGTTAAGAAGGATCGCATCGACTCATCTATTCG 540
Query 817 CTCCTCGGCGTATCTTAGCACACGAAGCTGGGCGCCAGCTAGACTGCGCTGAAATGGTGA 876
|||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 541 CTCCTCGGCGTATCTTAGCACATGAAGCTGGACGCCACCTAGACTGCGCTGAAATGGTGA 600
Query 877 AAGCTGTGTCAGTGGAGCAAAACGGCGCTGGATCAGTCGTTTTAAGGAAACACTTACAAC 936
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 601 AAGCTGTGTCAGCGGAGCAAAACGGCGCTGGATCAGTCGTTTTAAGGAAACACTTGCAAC 660
Query 937 TAGCCGCCTTGAACAACATCATGGGAAGTGTTTTTGGGAGAAGATACGATCCTCTGGCTC 996
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 661 TAGCCGCCTTGAACAACATCATGGGGAGTGTTTTTGGGAGAAGATACGATCCTCTGGCTC 720
Query 997 AGAAAGAGGATCTTGATGAGCTTACATCAATGGTTAGGGAAGGGTTCGAGCTTTTGGGTG 1056
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 721 AGAAAGAGGATCTTGATGAGCTTACATCAATGGTCAGGGAAGGGTTCGAGCTTTTAGGTG 780
Query 1057 CTTTTAATTGGTCTGATTATCTTCCATGGCTCGGTTATTTCTACGACTCAATTCGTTTAA 1116
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 781 CTTTTAATTGGTCCGATTATCTTCCATGGCTCGGTTATTTCTATGACTCGATTCGCTTAA 840
Query 1117 ACCAACGTTGCTCAGATCTCGTCCCTCGAATTAGAACCCTCGTCAAGAAAATCATCGACG 1176
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 841 ACCAACGTTGCTCAGATCTCGTTCCTCGAATTAGAACCCTCGTCAAGAAAATCATCGACG 900
Query 1177 AACATCGAGTTAGTAACTCTGAGAAGAAAAGAGACATTGGAGATTTTGTTGATGTCTTAT 1236
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 901 AACACCGAGTTAGTAACTCTGAGAAGAAAAGAGACATTGGAGATTTCGTTGATGTCTTAT 960
Query 1237 TGTCTTTAGACGGTGATGAGAAACTTCAAGAAGATGACATGATCGCCGTTTTATGGGAGA 1296
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 961 TGTCTTTAGACGGTGATGAGAAGCTTCGAGAAGATGACATGATCGCCGTTTTATGGGAGA 1020
Query 1297 TGATTTTTCGAGGGACAGATACAACGGCGTTATTAACGGAGTGGACCATGGCCGAGCTAG 1356
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1021 TGATTTTTCGAGGGACAGATACAACGGCGTTATTAACGGAGTGGACCATGGCTGAGCTAG 1080
Query 1357 TACTGAACCCTAACGTGCAAACCAAGTTACGAGACGAGATTTTAACTGCTGTGGGCGACG 1416
||||||||||||||||||||||||||||||||||||||||| |||| |||||| | |
Sbjct 1081 TACTGAACCCTAACGTGCAAACCAAGTTACGAGACGAGATTGTAACCGCTGTG----A-G 1135
Query 1417 GCGCCGACGGAGACGTGGCAGATGCTGACCTGGCAAAACTCCCGTACCTAAACGCAGTGG 1476
|| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1136 -CG---ACGGAGACGTGGCAGATGCTGACCTGGCAAAACTCCCGTACCTGAGCGCAGTGG 1191
Query 1477 TGAAGGAAACTCTAAGGCTGCATCCTCCTGGACCACTGCTTTCATGGGCTCGTCTTTCCA 1536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 TGAAGGAAACTCTAAGGCTGCATCCTCCTGGACCACTGCTTTCATGGGCTCGTCTTTCCA 1251
Query 1537 CGTCAGACGTCCAGCTCAGCAATGGCATGGT-GATTCCAAAGGGAACTACAGCGATGGTC 1595
|||||||||||||||||| |||||||||||| | |||||||||||||||| |||||||||
Sbjct 1252 CGTCAGACGTCCAGCTCAACAATGGCATGGTAG-TTCCAAAGGGAACTACGGCGATGGTC 1310
Query 1596 AACATGTGGGCTATAACCCACGACCAGACTGTATGGTCCGACCCGCTAAAGTTTGACCCG 1655
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1311 AACATGTGGGCTATAACTCACGACCAGACGGTATGGTCCGACCCGCTAAAGTTCGACCCG 1370
Query 1656 GAGAGATTCACTGGGAATGCTGACATGGATATTCGTGGTGGGGATCTAAGGCTTGCACCG 1715
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1371 GAGAGGTTCACTGGGAATGCTGACGTGGATATTCGTGGTGGGGATCTAAGGCTTGCGCCG 1430
Query 1716 TTTGGAGCCGGTAGGAGAGTGTGTCCGGGGAAGAACATGGGGCTAGCTACTGTGACTCGG 1775
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 1431 TTTGGAGCCGGTAGGAGGGTGTGTCCGGGGAAGAACATGGGGTTAGCTACTGTGACTCGG 1490
Query 1776 TGGGTGGCTGAGTTGGTACGACGGTTCGAGTGGGGTCAGGATCAGACCGAGCCAGTTGAT 1835
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1491 TGGGTGGCTGAGTTGGTGCGACGGTTCGAGTGGGGTCAGGATCATACCGAGCCAGTTGAT 1550
Query 1836 CTTGGTGAGGTCTTGAAGCTTTCTTGTGAGATGGAGCATCCGTTACGTGCCGTTGTAACG 1895
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1551 CTTGGTGAGGTCTTGAAGCTTTCTTGTGAGATGGAGCATCCGTTACGTGCTGTTGTAACG 1610
Query 1896 GAAATATTTTAAGTCAAAAAAGGGCTAAGTAGGg 1929
||| |||||||||||||||| |||||||||||||
Sbjct 1611 GAATTATTTTAAGTCAAAAA-GGGCTAAGTAGGG 1643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81246492585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5