BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G09978.1 Length=561 Score E Sequences producing significant alignments: (Bits) Value Ahg892908 jgi|Araly1|892908|Al_scaffold_0006_904 322 2e-87 > Ahg892908 jgi|Araly1|892908|Al_scaffold_0006_904 Length=273 Score = 322 bits (174), Expect = 2e-87 Identities = 245/277 (88%), Gaps = 13/277 (5%) Strand=Plus/Plus Query 16 ATGGAGGGAGAGGGAAGAAGAGAAGATGGAG---ATTGCTCTTATCTCTGCATCCCTTTT 72 ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1 ATGGAGGGAGAAGGAAGAAGAGAAGATGGAGATAATTGCTCTTATCTCTGCATCCCTTTT 60 Query 73 AACTCCATCCGCGATATCTTTCAATCGTTCTTCACTAGGTTTC-GCGGTCTAACTCCTGA 131 |||| ||||||||||||||| | ||||||||| || || || | || ||||||| Sbjct 61 AACTTCATCCGCGATATCTTCCGATCGTTCTT--CT-GGAGTCTACCAACT-CCTCCTGA 116 Query 132 TAATTCTCCGGTGACGATATCACAAGAAGTAGAGGAAGAGACAGAGGTAGTGAATAT-AC 190 |||||||||||||| |||||||||||||| ||||||||||||||| || |||||| | || Sbjct 117 TAATTCTCCGGTGAAGATATCACAAGAAGAAGAGGAAGAGACAGATGTTGTGAATGTGAC 176 Query 191 --CGAGGAGTGTGGTGTCGGGGAACGTTGCAGCGCGAAAGG-GTAAGCAGCAAACGAGTT 247 | |||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 177 TTCAAGGAGTGTGGTGTCGGGGAACGTTGCAGCGCGAA-GGAGTAAGCAGCAAACGAGTT 235 Query 248 CCGGGAAGGGTGGAGGTACCAACTAGGCACCTTCCTA 284 |||||||| |||||||||||||| ||||||||||||| Sbjct 236 CCGGGAAGCGTGGAGGTACCAACAAGGCACCTTCCTA 272 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20489551293 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5