BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09978.1
Length=561
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892908 jgi|Araly1|892908|Al_scaffold_0006_904 322 2e-87
> Ahg892908 jgi|Araly1|892908|Al_scaffold_0006_904
Length=273
Score = 322 bits (174), Expect = 2e-87
Identities = 245/277 (88%), Gaps = 13/277 (5%)
Strand=Plus/Plus
Query 16 ATGGAGGGAGAGGGAAGAAGAGAAGATGGAG---ATTGCTCTTATCTCTGCATCCCTTTT 72
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGGAGGGAGAAGGAAGAAGAGAAGATGGAGATAATTGCTCTTATCTCTGCATCCCTTTT 60
Query 73 AACTCCATCCGCGATATCTTTCAATCGTTCTTCACTAGGTTTC-GCGGTCTAACTCCTGA 131
|||| ||||||||||||||| | ||||||||| || || || | || |||||||
Sbjct 61 AACTTCATCCGCGATATCTTCCGATCGTTCTT--CT-GGAGTCTACCAACT-CCTCCTGA 116
Query 132 TAATTCTCCGGTGACGATATCACAAGAAGTAGAGGAAGAGACAGAGGTAGTGAATAT-AC 190
|||||||||||||| |||||||||||||| ||||||||||||||| || |||||| | ||
Sbjct 117 TAATTCTCCGGTGAAGATATCACAAGAAGAAGAGGAAGAGACAGATGTTGTGAATGTGAC 176
Query 191 --CGAGGAGTGTGGTGTCGGGGAACGTTGCAGCGCGAAAGG-GTAAGCAGCAAACGAGTT 247
| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 177 TTCAAGGAGTGTGGTGTCGGGGAACGTTGCAGCGCGAA-GGAGTAAGCAGCAAACGAGTT 235
Query 248 CCGGGAAGGGTGGAGGTACCAACTAGGCACCTTCCTA 284
|||||||| |||||||||||||| |||||||||||||
Sbjct 236 CCGGGAAGCGTGGAGGTACCAACAAGGCACCTTCCTA 272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20489551293
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5