BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09980.1
Length=541
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325545 jgi|Araly1|325545|fgenesh1_pm.C_scaffold_6000765 344 4e-94
> Ahg325545 jgi|Araly1|325545|fgenesh1_pm.C_scaffold_6000765
Length=249
Score = 344 bits (186), Expect = 4e-94
Identities = 226/245 (92%), Gaps = 3/245 (1%)
Strand=Plus/Plus
Query 63 GAGAG-AGGAGTTTCTTATTATCTATGGATTCCTTTTAAGTTCATCCACCAAACTTTCGG 121
||||| |||||||||||||||||||||||| || |||| |||||| |||||||||||| |
Sbjct 6 GAGAGAAGGAGTTTCTTATTATCTATGGATCCCATTTAGGTTCATTCACCAAACTTTCCG 65
Query 122 ATCTCTTTTACTCAAGCTTCTCGGTTTGCGATCTCCATCTGATCATAGTTTTCCGGAGGA 181
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||| | ||
Sbjct 66 ATCTCTTTTACTCAAGCTTCTCGGTTTGCGATCTCCTTCTGATCATAGTTTCCCGAAAGA 125
Query 182 TGGGGAGGAGGAAGTTAAGGTTGTGGAAGTGTCGTCGAGGGGTCTTCCCGGGAAAAA-GA 240
| ||||||| ||||| ||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 126 AGAGGAGGAGAAAGTTGAGGTTGTGGAAGTGTCGTCGAGGGGTCTTCC-GGCAAAAAAGA 184
Query 241 ATGTACTAAAGAAGTCGAGAGAAAGTTCCGGCAAGCCGGGAGGCACCAACAAGAAGCCGT 300
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 185 ATGTACTGAAGAAGTCGAGAGAAAGTTCTGGCAAGCCGGGAGGCACCAACAAGAAGCCGT 244
Query 301 TTTAG 305
|||||
Sbjct 245 TTTAG 249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19726439513
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5