BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G09980.1 Length=541 Score E Sequences producing significant alignments: (Bits) Value Ahg325545 jgi|Araly1|325545|fgenesh1_pm.C_scaffold_6000765 344 4e-94 > Ahg325545 jgi|Araly1|325545|fgenesh1_pm.C_scaffold_6000765 Length=249 Score = 344 bits (186), Expect = 4e-94 Identities = 226/245 (92%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 63 GAGAG-AGGAGTTTCTTATTATCTATGGATTCCTTTTAAGTTCATCCACCAAACTTTCGG 121 ||||| |||||||||||||||||||||||| || |||| |||||| |||||||||||| | Sbjct 6 GAGAGAAGGAGTTTCTTATTATCTATGGATCCCATTTAGGTTCATTCACCAAACTTTCCG 65 Query 122 ATCTCTTTTACTCAAGCTTCTCGGTTTGCGATCTCCATCTGATCATAGTTTTCCGGAGGA 181 |||||||||||||||||||||||||||||||||||| |||||||||||||| ||| | || Sbjct 66 ATCTCTTTTACTCAAGCTTCTCGGTTTGCGATCTCCTTCTGATCATAGTTTCCCGAAAGA 125 Query 182 TGGGGAGGAGGAAGTTAAGGTTGTGGAAGTGTCGTCGAGGGGTCTTCCCGGGAAAAA-GA 240 | ||||||| ||||| ||||||||||||||||||||||||||||||| || ||||| || Sbjct 126 AGAGGAGGAGAAAGTTGAGGTTGTGGAAGTGTCGTCGAGGGGTCTTCC-GGCAAAAAAGA 184 Query 241 ATGTACTAAAGAAGTCGAGAGAAAGTTCCGGCAAGCCGGGAGGCACCAACAAGAAGCCGT 300 ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 185 ATGTACTGAAGAAGTCGAGAGAAAGTTCTGGCAAGCCGGGAGGCACCAACAAGAAGCCGT 244 Query 301 TTTAG 305 ||||| Sbjct 245 TTTAG 249 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19726439513 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5